jgi.p|Nanoce1779_2|571588, mRNA_1278 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|571588
Unique Name	mRNA_1278
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2743
Alignment location	scaffold_1:168411..171153 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	571674
Track	FilteredModels2
ProteinId	571588

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:168411..171153 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571588	gene_1278	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571588	mRNA_1278-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1278	CDS_1278	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:168411..171153-
coding sequence from alignment at scaffold_1:168411..171153-

mRNA sequence

>mRNA_1278 ID=mRNA_1278|Name=jgi.p|Nanoce1779_2|571588|organism=Nannochloropsis oceanica|type=mRNA|length=2743bp
TGGAAAAGACAACACAACCACGGCAGCAACAACAACAACAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCAGAAGCAGCCTCCTCCTCT
TGTTTATTGGCGTTGCAGGTGATGGTGGATGAGGGCTCTGAGGCCCCCGT
CTTGGAGAGGGCCGAGGCCTGGCTGCGACTAGCACGGTTGAGCAGCAGCC
AGAAAAAAAAGGAGGAAATGCTGGAGCAGGCATGGGTGCTTGCCGAACGG
AGCCGCTGTCCACGGTTGATGCGTGACGCTGGTCGTCTGTCGTTTGTGGC
ATCCACAGCAGCAAGGGCAACACTAGCAGTACGAGCAGCAACAGCAGCAC
CAGCAGAGGCAACAGAGCCGTCTTCAGTAGCAAAGATAGGAGCGTCAGCA
TCTGCTGTTTGGCGGCTGGTCAATTCGGTAGGGATCGGTTTTGGAAACAG
CTTGCGGTTGTCTTCGTCAGGCACGAGGGAGAGGTTGAGGGAGGTCTTGC
CTTCAACCTGGACTGTGGTCACCCTAGCATTATCTCCAGTTCAGGACGGA
GAGGAAGGTGAGAAGGAGGGAGGAACGGGTGATTTATTGATAGGGAGGAT
TGAAGGAGGGAAAGGGGGAAGGATGATGGGAGCGCGGTTAGGGATAGCGG
GGGAGATCAGGCGGCTCTTGGATGAATTTGAGAAAGTGATGGAGGGAAAT
AGCAAATCGTTGCACGGTCGGTCAGCGGAGGAGGTAGCGGGGTGGGGAAA
GAGGGAGAAAGCGGGTTGGTGGAAAGAGAGGGAGAGGCTGGATGCGCAGT
TGGGCGGGATAGTGAGAGATTTGGAGAGGACCATGGGGCCCTGGCGATGG
TTGATGGGAGGGCAGGTTAATGTGAAGGAGAATGGGCCAGTGGTTGGTGT
GGTCGAGGCGGCGTTGTTGGCGCTGGGTGTTGATGACAAGGAGGAAGGAG
GGGATGGAGAACAGGAGGACAGTCTAGCTGTTCTGCTACGTGCGGCTTTG
GTCGGGATAGCGAATGTGCATCCGATGCTTTCAAGGGAGGAACAGCGGGA
GGAGTTGTACTTAGTTATAAAAACAGTAGGGCTTTCGGTGGCTGTAGGTC
AGGTGGATGCTGCTTTGGATTGTCTGGCGGCAGCAGCAGCAGCAGCATTG
GTGACGACAGCATCAAAAACAATCGTTTCTCATCAAAGTGTTGCAAATGT
CGTCACTGGGAAGGGCAAGATTACGGCGACAAAGAAGAAGACGCGTCCAA
GCAGCAGCAGCTGCAGTGATGGTGGGGGCGACGCCGAGCTCGAGACGTTG
TGCAAGGACTTGAGCAAGCTGACAGTGGCGGAGTTGAAGAAAGAGCTGGC
GGCGCGATATCTGCCCACTACGGGCGTCAAGGCCACGTTGCTGGCACGTT
TGGAGGAAGACAGCAGTAGCAGCAGGGTTAAGCCAAAGCAGAAGAATGAA
GACGTAGACGATGACACCGTCGAAGCAGCCCGTCGAGATACGCCGCCAAC
AGACTCTGTAGATGCTCTGTTTACCTCGCACTGTAGCTCCTCCTCCTCCT
CTACCAGCCGTCCCCGAGCTTCAGCGGGCATGAAGATGGATAAAGGATCG
AGACAGCAACGTTGCCCTCTTCTACTTGTATTAGACGAGACCCTGCAGCG
CCTGCCATGGGAGTCTTTGCCTCTTTTGAAAGGCCACCCTGTCTCCCGGT
GTCCTTCCCTCGAGTACATAGGCGCGACCCTCCACAGTCATAGCTGCAGC
TGCAGCAGCAGCAGCAGCAGCAGTAGAAGCAAAACTAAGACTGGGCCCCG
CGGTACGTCCATCGCAGCTGCCGCCAGAAGGAAGAAAGACGAAGAAGACG
TACCCTCCATCTCCCCTGCCTCCACCACCACCTCCGCCATCACCCTCGGT
CCTGACGGCACACTTCAGATCCCGCGCTCACCCGGCTTTTATGTGCTCGA
CCCGGAAGCCAACCTCTCCACCACGAAAGCAACCCTTCAGCCAGCCCTTG
CAGCACTTCATGCCTCTCATTCCTTTTCTTCTTCTTCTTCAAAGGCGAGC
AAAAAAGAGCAGCAGCAGTGGGAGGGGTTGGTCGGCGAGGCGCCGAGTGA
GGACTGGCTCAAAAGCAAGCTGGAGACATCAGCCGTCTTTATCTACTGTG
GGCATGGTTCTGGAGAAGTTTTCTTGGCTCGAGAAGACGTAGCTGCTCTG
CCACAAGTGCCCTTGGCCATCTTGATGGGCTGCTCCAGCGGTCGATTGCG
TCTGCCGGGCTCCAGCAGCAGCACCTGCAGCAGTATCGTCAATAGGGATG
GGTTTGGTGGCTGTGTGAATGCACTGATGTCGCCGGAGCTGTTTGAATCG
TCGGGTATGGCCCTTTCGTATTTGGCGGCGGGGAGCCCGGCGGTGGTGGG
AAATTTGTGGGATGTGACTGATCGAGACATTGACCGGTTTTGTCTAGCCT
TATTAGAGGCCTTGTTCCCGATAATGAGGACGGGGGAACAGAAGCAAGAA
GAGGAGGATGGTGGTGTTTTGCTGCCGGAAGATGTAGGGGGGGGCAAGGA
CGACAAGGCGTTGCTCCTTCCGGCGGTGGCACGGGCCCGCAGTGCGTGCA
AGCTGCCTTACTTGGTGGGATCGGCCCCGGTGGTGTATGGCTTACCATGT
GAGCTGATAGATAAGACAACTGACGATGTGTAAATGAAAAGTAGAGCACA
GATAACGTTAGCAAAATCAAAAGAAAGTAAAAATATATATATA

protein sequence of jgi.p|Nanoce1779_2|571588

>mRNA_1278-protein ID=mRNA_1278-protein|Name=jgi.p|Nanoce1779_2|571588|organism=Nannochloropsis oceanica|type=polypeptide|length=854bp
MVDEGSEAPVLERAEAWLRLARLSSSQKKKEEMLEQAWVLAERSRCPRLM
RDAGRLSFVASTAARATLAVRAATAAPAEATEPSSVAKIGASASAVWRLV
NSVGIGFGNSLRLSSSGTRERLREVLPSTWTVVTLALSPVQDGEEGEKEG
GTGDLLIGRIEGGKGGRMMGARLGIAGEIRRLLDEFEKVMEGNSKSLHGR
SAEEVAGWGKREKAGWWKERERLDAQLGGIVRDLERTMGPWRWLMGGQVN
VKENGPVVGVVEAALLALGVDDKEEGGDGEQEDSLAVLLRAALVGIANVH
PMLSREEQREELYLVIKTVGLSVAVGQVDAALDCLAAAAAAALVTTASKT
IVSHQSVANVVTGKGKITATKKKTRPSSSSCSDGGGDAELETLCKDLSKL
TVAELKKELAARYLPTTGVKATLLARLEEDSSSSRVKPKQKNEDVDDDTV
EAARRDTPPTDSVDALFTSHCSSSSSSTSRPRASAGMKMDKGSRQQRCPL
LLVLDETLQRLPWESLPLLKGHPVSRCPSLEYIGATLHSHSCSCSSSSSS
SRSKTKTGPRGTSIAAAARRKKDEEDVPSISPASTTTSAITLGPDGTLQI
PRSPGFYVLDPEANLSTTKATLQPALAALHASHSFSSSSSKASKKEQQQW
EGLVGEAPSEDWLKSKLETSAVFIYCGHGSGEVFLAREDVAALPQVPLAI
LMGCSSGRLRLPGSSSSTCSSIVNRDGFGGCVNALMSPELFESSGMALSY
LAAGSPAVVGNLWDVTDRDIDRFCLALLEALFPIMRTGEQKQEEEDGGVL
LPEDVGGGKDDKALLLPAVARARSACKLPYLVGSAPVVYGLPCELIDKTT
DDV*

mRNA from alignment at scaffold_1:168411..171153-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1278 ID=mRNA_1278|Name=jgi.p|Nanoce1779_2|571588|organism=Nannochloropsis oceanica|type=mRNA|length=2743bp|location=Sequence derived from alignment at scaffold_1:168411..171153- (Nannochloropsis oceanica)
TGGAAAAGACAACACAACCACGGCAGCAACAACAACAACAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCAGAAGCAGCCTCCTCCTCT
TGTTTATTGGCGTTGCAGGTGATGGTGGATGAGGGCTCTGAGGCCCCCGT
CTTGGAGAGGGCCGAGGCCTGGCTGCGACTAGCACGGTTGAGCAGCAGCC
AGAAAAAAAAGGAGGAAATGCTGGAGCAGGCATGGGTGCTTGCCGAACGG
AGCCGCTGTCCACGGTTGATGCGTGACGCTGGTCGTCTGTCGTTTGTGGC
ATCCACAGCAGCAAGGGCAACACTAGCAGTACGAGCAGCAACAGCAGCAC
CAGCAGAGGCAACAGAGCCGTCTTCAGTAGCAAAGATAGGAGCGTCAGCA
TCTGCTGTTTGGCGGCTGGTCAATTCGGTAGGGATCGGTTTTGGAAACAG
CTTGCGGTTGTCTTCGTCAGGCACGAGGGAGAGGTTGAGGGAGGTCTTGC
CTTCAACCTGGACTGTGGTCACCCTAGCATTATCTCCAGTTCAGGACGGA
GAGGAAGGTGAGAAGGAGGGAGGAACGGGTGATTTATTGATAGGGAGGAT
TGAAGGAGGGAAAGGGGGAAGGATGATGGGAGCGCGGTTAGGGATAGCGG
GGGAGATCAGGCGGCTCTTGGATGAATTTGAGAAAGTGATGGAGGGAAAT
AGCAAATCGTTGCACGGTCGGTCAGCGGAGGAGGTAGCGGGGTGGGGAAA
GAGGGAGAAAGCGGGTTGGTGGAAAGAGAGGGAGAGGCTGGATGCGCAGT
TGGGCGGGATAGTGAGAGATTTGGAGAGGACCATGGGGCCCTGGCGATGG
TTGATGGGAGGGCAGGTTAATGTGAAGGAGAATGGGCCAGTGGTTGGTGT
GGTCGAGGCGGCGTTGTTGGCGCTGGGTGTTGATGACAAGGAGGAAGGAG
GGGATGGAGAACAGGAGGACAGTCTAGCTGTTCTGCTACGTGCGGCTTTG
GTCGGGATAGCGAATGTGCATCCGATGCTTTCAAGGGAGGAACAGCGGGA
GGAGTTGTACTTAGTTATAAAAACAGTAGGGCTTTCGGTGGCTGTAGGTC
AGGTGGATGCTGCTTTGGATTGTCTGGCGGCAGCAGCAGCAGCAGCATTG
GTGACGACAGCATCAAAAACAATCGTTTCTCATCAAAGTGTTGCAAATGT
CGTCACTGGGAAGGGCAAGATTACGGCGACAAAGAAGAAGACGCGTCCAA
GCAGCAGCAGCTGCAGTGATGGTGGGGGCGACGCCGAGCTCGAGACGTTG
TGCAAGGACTTGAGCAAGCTGACAGTGGCGGAGTTGAAGAAAGAGCTGGC
GGCGCGATATCTGCCCACTACGGGCGTCAAGGCCACGTTGCTGGCACGTT
TGGAGGAAGACAGCAGTAGCAGCAGGGTTAAGCCAAAGCAGAAGAATGAA
GACGTAGACGATGACACCGTCGAAGCAGCCCGTCGAGATACGCCGCCAAC
AGACTCTGTAGATGCTCTGTTTACCTCGCACTGTAGCTCCTCCTCCTCCT
CTACCAGCCGTCCCCGAGCTTCAGCGGGCATGAAGATGGATAAAGGATCG
AGACAGCAACGTTGCCCTCTTCTACTTGTATTAGACGAGACCCTGCAGCG
CCTGCCATGGGAGTCTTTGCCTCTTTTGAAAGGCCACCCTGTCTCCCGGT
GTCCTTCCCTCGAGTACATAGGCGCGACCCTCCACAGTCATAGCTGCAGC
TGCAGCAGCAGCAGCAGCAGCAGTAGAAGCAAAACTAAGACTGGGCCCCG
CGGTACGTCCATCGCAGCTGCCGCCAGAAGGAAGAAAGACGAAGAAGACG
TACCCTCCATCTCCCCTGCCTCCACCACCACCTCCGCCATCACCCTCGGT
CCTGACGGCACACTTCAGATCCCGCGCTCACCCGGCTTTTATGTGCTCGA
CCCGGAAGCCAACCTCTCCACCACGAAAGCAACCCTTCAGCCAGCCCTTG
CAGCACTTCATGCCTCTCATTCCTTTTCTTCTTCTTCTTCAAAGGCGAGC
AAAAAAGAGCAGCAGCAGTGGGAGGGGTTGGTCGGCGAGGCGCCGAGTGA
GGACTGGCTCAAAAGCAAGCTGGAGACATCAGCCGTCTTTATCTACTGTG
GGCATGGTTCTGGAGAAGTTTTCTTGGCTCGAGAAGACGTAGCTGCTCTG
CCACAAGTGCCCTTGGCCATCTTGATGGGCTGCTCCAGCGGTCGATTGCG
TCTGCCGGGCTCCAGCAGCAGCACCTGCAGCAGTATCGTCAATAGGGATG
GGTTTGGTGGCTGTGTGAATGCACTGATGTCGCCGGAGCTGTTTGAATCG
TCGGGTATGGCCCTTTCGTATTTGGCGGCGGGGAGCCCGGCGGTGGTGGG
AAATTTGTGGGATGTGACTGATCGAGACATTGACCGGTTTTGTCTAGCCT
TATTAGAGGCCTTGTTCCCGATAATGAGGACGGGGGAACAGAAGCAAGAA
GAGGAGGATGGTGGTGTTTTGCTGCCGGAAGATGTAGGGGGGGGCAAGGA
CGACAAGGCGTTGCTCCTTCCGGCGGTGGCACGGGCCCGCAGTGCGTGCA
AGCTGCCTTACTTGGTGGGATCGGCCCCGGTGGTGTATGGCTTACCATGT
GAGCTGATAGATAAGACAACTGACGATGTGTAAATGAAAAGTAGAGCACA
GATAACGTTAGCAAAATCAAAAGAAAGTAAAAATATATATATA

Coding sequence (CDS) from alignment at scaffold_1:168411..171153-

>mRNA_1278 ID=mRNA_1278|Name=jgi.p|Nanoce1779_2|571588|organism=Nannochloropsis oceanica|type=CDS|length=2562bp|location=Sequence derived from alignment at scaffold_1:168411..171153- (Nannochloropsis oceanica)
ATGGTGGATGAGGGCTCTGAGGCCCCCGTCTTGGAGAGGGCCGAGGCCTG
GCTGCGACTAGCACGGTTGAGCAGCAGCCAGAAAAAAAAGGAGGAAATGC
TGGAGCAGGCATGGGTGCTTGCCGAACGGAGCCGCTGTCCACGGTTGATG
CGTGACGCTGGTCGTCTGTCGTTTGTGGCATCCACAGCAGCAAGGGCAAC
ACTAGCAGTACGAGCAGCAACAGCAGCACCAGCAGAGGCAACAGAGCCGT
CTTCAGTAGCAAAGATAGGAGCGTCAGCATCTGCTGTTTGGCGGCTGGTC
AATTCGGTAGGGATCGGTTTTGGAAACAGCTTGCGGTTGTCTTCGTCAGG
CACGAGGGAGAGGTTGAGGGAGGTCTTGCCTTCAACCTGGACTGTGGTCA
CCCTAGCATTATCTCCAGTTCAGGACGGAGAGGAAGGTGAGAAGGAGGGA
GGAACGGGTGATTTATTGATAGGGAGGATTGAAGGAGGGAAAGGGGGAAG
GATGATGGGAGCGCGGTTAGGGATAGCGGGGGAGATCAGGCGGCTCTTGG
ATGAATTTGAGAAAGTGATGGAGGGAAATAGCAAATCGTTGCACGGTCGG
TCAGCGGAGGAGGTAGCGGGGTGGGGAAAGAGGGAGAAAGCGGGTTGGTG
GAAAGAGAGGGAGAGGCTGGATGCGCAGTTGGGCGGGATAGTGAGAGATT
TGGAGAGGACCATGGGGCCCTGGCGATGGTTGATGGGAGGGCAGGTTAAT
GTGAAGGAGAATGGGCCAGTGGTTGGTGTGGTCGAGGCGGCGTTGTTGGC
GCTGGGTGTTGATGACAAGGAGGAAGGAGGGGATGGAGAACAGGAGGACA
GTCTAGCTGTTCTGCTACGTGCGGCTTTGGTCGGGATAGCGAATGTGCAT
CCGATGCTTTCAAGGGAGGAACAGCGGGAGGAGTTGTACTTAGTTATAAA
AACAGTAGGGCTTTCGGTGGCTGTAGGTCAGGTGGATGCTGCTTTGGATT
GTCTGGCGGCAGCAGCAGCAGCAGCATTGGTGACGACAGCATCAAAAACA
ATCGTTTCTCATCAAAGTGTTGCAAATGTCGTCACTGGGAAGGGCAAGAT
TACGGCGACAAAGAAGAAGACGCGTCCAAGCAGCAGCAGCTGCAGTGATG
GTGGGGGCGACGCCGAGCTCGAGACGTTGTGCAAGGACTTGAGCAAGCTG
ACAGTGGCGGAGTTGAAGAAAGAGCTGGCGGCGCGATATCTGCCCACTAC
GGGCGTCAAGGCCACGTTGCTGGCACGTTTGGAGGAAGACAGCAGTAGCA
GCAGGGTTAAGCCAAAGCAGAAGAATGAAGACGTAGACGATGACACCGTC
GAAGCAGCCCGTCGAGATACGCCGCCAACAGACTCTGTAGATGCTCTGTT
TACCTCGCACTGTAGCTCCTCCTCCTCCTCTACCAGCCGTCCCCGAGCTT
CAGCGGGCATGAAGATGGATAAAGGATCGAGACAGCAACGTTGCCCTCTT
CTACTTGTATTAGACGAGACCCTGCAGCGCCTGCCATGGGAGTCTTTGCC
TCTTTTGAAAGGCCACCCTGTCTCCCGGTGTCCTTCCCTCGAGTACATAG
GCGCGACCCTCCACAGTCATAGCTGCAGCTGCAGCAGCAGCAGCAGCAGC
AGTAGAAGCAAAACTAAGACTGGGCCCCGCGGTACGTCCATCGCAGCTGC
CGCCAGAAGGAAGAAAGACGAAGAAGACGTACCCTCCATCTCCCCTGCCT
CCACCACCACCTCCGCCATCACCCTCGGTCCTGACGGCACACTTCAGATC
CCGCGCTCACCCGGCTTTTATGTGCTCGACCCGGAAGCCAACCTCTCCAC
CACGAAAGCAACCCTTCAGCCAGCCCTTGCAGCACTTCATGCCTCTCATT
CCTTTTCTTCTTCTTCTTCAAAGGCGAGCAAAAAAGAGCAGCAGCAGTGG
GAGGGGTTGGTCGGCGAGGCGCCGAGTGAGGACTGGCTCAAAAGCAAGCT
GGAGACATCAGCCGTCTTTATCTACTGTGGGCATGGTTCTGGAGAAGTTT
TCTTGGCTCGAGAAGACGTAGCTGCTCTGCCACAAGTGCCCTTGGCCATC
TTGATGGGCTGCTCCAGCGGTCGATTGCGTCTGCCGGGCTCCAGCAGCAG
CACCTGCAGCAGTATCGTCAATAGGGATGGGTTTGGTGGCTGTGTGAATG
CACTGATGTCGCCGGAGCTGTTTGAATCGTCGGGTATGGCCCTTTCGTAT
TTGGCGGCGGGGAGCCCGGCGGTGGTGGGAAATTTGTGGGATGTGACTGA
TCGAGACATTGACCGGTTTTGTCTAGCCTTATTAGAGGCCTTGTTCCCGA
TAATGAGGACGGGGGAACAGAAGCAAGAAGAGGAGGATGGTGGTGTTTTG
CTGCCGGAAGATGTAGGGGGGGGCAAGGACGACAAGGCGTTGCTCCTTCC
GGCGGTGGCACGGGCCCGCAGTGCGTGCAAGCTGCCTTACTTGGTGGGAT
CGGCCCCGGTGGTGTATGGCTTACCATGTGAGCTGATAGATAAGACAACT
GACGATGTGTAA

Synonyms

Publications