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Properties
| Property Name | Value |
|---|
| TranscriptId | 550823 |
| Track | FilteredModels2 |
| ProteinId | 550737 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:325141..328108 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_123 ID=mRNA_123|Name=jgi.p|Nanoce1779_2|550737|organism=Nannochloropsis oceanica|type=mRNA|length=2635bp
ACAGGGCGCCTGCCCCGCTTGCTTTTGGGTTGCCTGTTCTTGTGGTAGCT
CTGCGTGCTTGTGACGTCGTTGTCTCCCCAGCCTCCCCTCATACTCGACC
CGCCCTCGTCGTACTAAGCGCACCCCTGCCTTCGACCTTTGGGGATACGG
ACAGACACAATAAAACAACGACATAACAGCAAGCAGAAGCATGGCGGACA
GCAGCAGCAGCAACAGCGGCACTGGAGGCAGTAGCAGCAGCGCCGGTGCC
CATGGCGGCGGGAACGGAGATCGCGAGCAGCAGTCCCAGCGGTCGCCTAA
CCAACTCCGGCAAGGGTCCATCTCCGCCTCGCACTCCATCTCTATTTCTA
CACCTCAATTTCACAACGAACGGCATGGCTCTGCCCCCCCCTCAGCTCAC
CAACCCGCCGGCCCTCAGTACCCACCCACTCACCGGGGTGTCCTGTACTG
TTCCACCCGCGGGGCTCGTCGCGACGTCACCTTCGAAGAGGTAGTCATGA
GTGGCCTCGCCCCGGATAAAGGTTTGTATGTCCCCCAAGAAATTCCGTAC
ATCTCTCTGGAGCAACTCGAAAAGCTTCGTGATGCCTCCTTCGTTGAACT
GGCCAATTACATCATGCGTTTATTCATCGGCCCAGAGGACATCCCTCCTG
AGAACCTACGAGTACTCATTGAGAGCAGCACCAAGTACTTCCGTGTCCAT
GAGGTGGCCCCAGTGAGAAAAGTGGGTCCCACGTGGGTTTTGGAGCTCTT
TCATGGCCCGACGTTCGCGTTCAAGGACGTGGCGTTGCAGTTTTTGGGGA
ACATGTTTGAGTATTTCTTGGCGAAGAAGAAGGGGGGCCCGGACGCGAAA
TTGACGGTGTTGGGGGCCACAAGTGGAGATACAGGCTCGGCAGCGATTCA
TGGATTGAGGGGGAAGAAGAACATTCAGGTGTTCGTTCTGTATCCCAAGG
GGAGGGTGAGCGAGGTGCAGGAGAGGCAAATGACCACGGTGTTGGACCGC
AACGTCCATTGCATTGCCGTGGAAGGTGCCACCTTTGATGATTGCCAGGA
CATCGTCAAAGCGGCTTTTCAGGACGAGGGGTTCCGGGATAATGCCAATC
TGGGGGCTGTTAATTCGATTAATTGGGCCAGGGTGCTTGCGCAGATCACA
TATTTTTTCCACGCGTACTTTCGTAAGAAAAAGCGGTCTAAGAGCTTGCC
AAAACTGTCTTTCTCGGTGCCGACGGGGAATTTCGGAGATGCATTGGCGG
GGTACTACGCCAAAGCAATGGGGCTACCCATTGACAAGATACTGGTGGCG
ACGAACGAGAATGATATTTTGCACCGTTTCTTTACGAGTGGGAAATATTG
GAAGAAGGAGGTGCAGGCGACACTGAGTCCGTCGATGGACATTTCAATTT
GCAGTAATTTCGAACGGTTGTTGTTTGATCTGGCGGGGAGAGATCCTGAG
TTGCTTAGGGAATGGATGGAGGAGTTCGAGAGAACGAAGAAGTTGACTCT
TCCTCCCCCTACTCTAGCCAAGGCGAGGGAGGACTTCATATCCTGTCGGG
TCGATCAGCCGGCAATGATTGAGGTGATGTTGTCCTTTCTACGGGATTAT
AACTACTTGTTATGCCCCCATAGCGCGGTAGGGGTGACAGCAGCTAAGCA
GTTGGCCATGTTGAATGCGGACACCATTTGCCTCGCGACTGCGCACCACG
CCAAATTCTTGGATGCTACGTTAAAGCATTTCCCCCTTGACGAGGTCGAT
GTGGAGGAGATTGAGGAGGAGGTGCCAACGCAATTGCGAGATTTGGATCA
TCTACCTACGCGGTACGTAACCTTGCCGGCGAGTGCATATTACGTGAAGA
AGTACGTGTTGCAAACATTGGAGGGGAAGGATAACGCGGCTCTCCTGAGG
TGGTTGGCACTGGGGGGTTGGGTGTGGGGGTGGGGAAGCGGAAAGCAGGG
GAAGAGAAGACGGCAAGTATCGATGGTGGCGGCTGCAGCGGTTGCTGTAG
CGGTGGTGGGGACGGTGGTGAGTGGGTTGGAGGGATCACGGAGATGGAGG
AGATAGGGAGGCGAAAGATAGGTATGTAGGTGAAGAAGAGGGAGGAAAAT
GTATTATGAATAGTGCGCTCGGACCCCTGTCAGAACTTATGCGAAATGTG
AAATGTCTTTTCTTAGTGATAGAAATAGTTATAGATACGTAATTTTGTTG
GGGTTGGATTGCGAGGGAGCTGGGAAGGAGCGGGAAAGGGAGGGAGGCAG
ACAGGGAGGTGTAAAACCCCTACTTGCCGGCGGGGGTTTCGCCTATCAAT
TTTGGAGGTGGCAGAGTTTCGTCTGTGAGGACTGAAGAAGTTAAGGAGCA
AATAAGTAAATAAATGTGAATGGCACAAATGGCACAAAATGAAGTGGAAT
TTGGAGAGGAGGGAGGCGAGCAGGAAAGAGGGGGCAGTATGTTTCAGGCC
GGTCACTGTTGGGACGATGGGAGAGGGCGTCGGGGTTTTTGCCGTCTCTC
TTTACCCTTCTCCTTCCTTTCTATATCTATCGGTGCGATTGCGTGTATGT
GCGTGCATGTGTATCATTCCTGTCCCTGCCAGCGCTTTCGATCCAGGCTT
TTAGTAACGAAACAAAACACGATCAATGACTTGAT back to topprotein sequence of jgi.p|Nanoce1779_2|550737 >mRNA_123-protein ID=mRNA_123-protein|Name=jgi.p|Nanoce1779_2|550737|organism=Nannochloropsis oceanica|type=polypeptide|length=622bp
MADSSSSNSGTGGSSSSAGAHGGGNGDREQQSQRSPNQLRQGSISASHSI
SISTPQFHNERHGSAPPSAHQPAGPQYPPTHRGVLYCSTRGARRDVTFEE
VVMSGLAPDKGLYVPQEIPYISLEQLEKLRDASFVELANYIMRLFIGPED
IPPENLRVLIESSTKYFRVHEVAPVRKVGPTWVLELFHGPTFAFKDVALQ
FLGNMFEYFLAKKKGGPDAKLTVLGATSGDTGSAAIHGLRGKKNIQVFVL
YPKGRVSEVQERQMTTVLDRNVHCIAVEGATFDDCQDIVKAAFQDEGFRD
NANLGAVNSINWARVLAQITYFFHAYFRKKKRSKSLPKLSFSVPTGNFGD
ALAGYYAKAMGLPIDKILVATNENDILHRFFTSGKYWKKEVQATLSPSMD
ISICSNFERLLFDLAGRDPELLREWMEEFERTKKLTLPPPTLAKAREDFI
SCRVDQPAMIEVMLSFLRDYNYLLCPHSAVGVTAAKQLAMLNADTICLAT
AHHAKFLDATLKHFPLDEVDVEEIEEEVPTQLRDLDHLPTRYVTLPASAY
YVKKYVLQTLEGKDNAALLRWLALGGWVWGWGSGKQGKRRRQVSMVAAAA
VAVAVVGTVVSGLEGSRRWRR* back to topmRNA from alignment at scaffold_3:325141..328108- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_123 ID=mRNA_123|Name=jgi.p|Nanoce1779_2|550737|organism=Nannochloropsis oceanica|type=mRNA|length=2968bp|location=Sequence derived from alignment at scaffold_3:325141..328108- (Nannochloropsis oceanica)
ACAGGGCGCCTGCCCCGCTTGCTTTTGGGTTGCCTGTTCTTGTGGTAGCT
CTGCGTGCTTGTGACGTCGTTGTCTCCCCAGCCTCCCCTCATACTCGACC
CGCCCTCGTCGTACTAAGCGCACCCCTGCCTTCGACCTTTGGGGATACGG
ACAGACACAATAAAACAACGACATAACAGCAAGCAGAAGCATGGCGGACA
GCAGCAGCAGCAACAGCGGCACTGGAGGCAGTAGCAGCAGCGCCGGTGCC
CATGGCGGCGGGAACGGAGATCGCGAGCAGCAGTCCCAGCGGTCGCCTAA
CCAACTCCGGCAAGGGTCCATCTCCGCCTCGCACTCCATCTCTATTTCTA
CACCTCAATTTCACAACGAACGGCATGGCTCTGCCCCCCCCTCAGCTCAC
CAACCCGCCGGCCCTCAGTACCCACCCACTCACCGGGGTGTCCTGTACTG
TTCCACCCGCGGGGCTCGTCGCGACGTCACCTTCGAAGAGGTAGTCATGA
GTGGCCTCGCCCCGGATAAAGGTTTGTATGTCCCCCAAGAAATTCCGTAC
ATCTCTCTGGAGCAACTCGAAAAGCTTCGTGATGCCTCCTTCGTTGAACT
GGCCAATTACATCATGCGTTTATTCATCGGCCCAGAGGACATCCCTCCTG
AGAACCTACGAGTACTCATTGAGAGCAGCACCAAGTACTTCCGTGTCCAT
GAGGTGGCCCCAGTGAGAAAAGTGGGTCCCACGTGGGTTTTGGAGCTCTT
TCATGGCCCGACGTTCGCGTTCAAGGACGTGGCGTTGCAGTTTTTGGGGA
ACATGTTTGAGTATTTCTTGGCGAAGAAGAAGGGGGGCCCGGACGCGAAA
TTGACGGTGTTGGGGGCCACAAGTGGAGATACAGGCTCGGCAGCGATTCA
TGGATTGAGGGGGAAGAAGAACATTCAGGTGTTCGTTCTGTATCCCAAGG
GGAGGGTGAGCGAGGTGCAGGAGAGGCAAATGACCACGGTGTTGGACCGC
AACGTCCATTGCATTGCCGTGGAAGGTGCCACCTTTGATGATTGCCAGGA
CATCGTCAAAGCGGCTTTTCAGGACGAGGGGTTCCGGGATAATGCCAATC
TGGGGGCTGTTAATTCGATTAATTGGGCCAGGGTGCTTGCGCAGATCACA
TATTTTTTCCACGCGTACTTTCGTGTGCTGGCAAAGAATGAGAAGGCCAT
GCAAAAGGAGCAACAGCAACAGCAACAGCAACAGCAAGCACAAGCACATG
CGGCACAACAAGCGCAACGGGATGGAGGAGGCGGAGAAGGAGAAGGAAGG
GATGGAGGGGGAGTGTCGGCGGTGGCGGACGCCAAGGCACCACCAAGAGG
CAGTAACAGCGGCAGCAGTAGTACCATCGCAGGTGGGGAGGGAGGAGGAG
GAGGAGGAAATAGTGAAATGATGTCGCAGCTATCGCCCAATGGAATTGCT
GAGGGAGGAGGAGGAGGCGGAAGTGGAGGAGGAGGAGGAGGAGAGAGGGA
AGGGAAGAAGAAAAAGCGGTCTAAGAGCTTGCCAAAACTGTCTTTCTCGG
TGCCGACGGGGAATTTCGGAGATGCATTGGCGGGGTACTACGCCAAAGCA
ATGGGGCTACCCATTGACAAGATACTGGTGGCGACGAACGAGAATGATAT
TTTGCACCGTTTCTTTACGAGTGGGAAATATTGGAAGAAGGAGGTGCAGG
CGACACTGAGTCCGTCGATGGACATTTCAATTTGCAGTAATTTCGAACGG
TTGTTGTTTGATCTGGCGGGGAGAGATCCTGAGTTGCTTAGGGAATGGAT
GGAGGAGTTCGAGAGAACGAAGAAGTTGACTCTTCCTCCCCCTACTCTAG
CCAAGGCGAGGGAGGACTTCATATCCTGTCGGGTCGATCAGCCGGCAATG
ATTGAGGTGATGTTGTCCTTTCTACGGGATTATAACTACTTGTTATGCCC
CCATAGCGCGGTAGGGGTGACAGCAGCTAAGCAGTTGGCCATGTTGAATG
CGGACACCATTTGCCTCGCGACTGCGCACCACGCCAAATTCTTGGATGCT
ACGTTAAAGCATTTCCCCCTTGACGAGGTCGATGTGGAGGAGATTGAGGA
GGAGGTGCCAACGCAATTGCGAGATTTGGATCATCTACCTACGCGGTACG
TAACCTTGCCGGCGAGTGCATATTACGTGAAGAAGTACGTGTTGCAAACA
TTGGAGGGGAAGGATAACGCGGCTCTCCTGAGGTGGTTGGCACTGGGGGG
TTGGGTGTGGGGGTGGGGAAGCGGAAAGCAGGGGAAGAGAAGACGGCAAG
TATCGATGGTGGCGGCTGCAGCGGTTGCTGTAGCGGTGGTGGGGACGGTG
GTGAGTGGGTTGGAGGGATCACGGAGATGGAGGAGATAGGGAGGCGAAAG
ATAGGTATGTAGGTGAAGAAGAGGGAGGAAAATGTATTATGAATAGTGCG
CTCGGACCCCTGTCAGAACTTATGCGAAATGTGAAATGTCTTTTCTTAGT
GATAGAAATAGTTATAGATACGTAATTTTGTTGGGGTTGGATTGCGAGGG
AGCTGGGAAGGAGCGGGAAAGGGAGGGAGGCAGACAGGGAGGTGTAAAAC
CCCTACTTGCCGGCGGGGGTTTCGCCTATCAATTTTGGAGGTGGCAGAGT
TTCGTCTGTGAGGACTGAAGAAGTTAAGGAGCAAATAAGTAAATAAATGT
GAATGGCACAAATGGCACAAAATGAAGTGGAATTTGGAGAGGAGGGAGGC
GAGCAGGAAAGAGGGGGCAGTATGTTTCAGGCCGGTCACTGTTGGGACGA
TGGGAGAGGGCGTCGGGGTTTTTGCCGTCTCTCTTTACCCTTCTCCTTCC
TTTCTATATCTATCGGTGCGATTGCGTGTATGTGCGTGCATGTGTATCAT
TCCTGTCCCTGCCAGCGCTTTCGATCCAGGCTTTTAGTAACGAAACAAAA
CACGATCAATGACTTGAT back to topCoding sequence (CDS) from alignment at scaffold_3:325141..328108- >mRNA_123 ID=mRNA_123|Name=jgi.p|Nanoce1779_2|550737|organism=Nannochloropsis oceanica|type=CDS|length=3732bp|location=Sequence derived from alignment at scaffold_3:325141..328108- (Nannochloropsis oceanica)
AAGAAAAAGCGGTCTAAGAGCTTGCCAAAACTGTCTTTCTCGGTGCCGAC
GGGGAATTTCGGAGATGCATTGGCGGGGTACTACGCCAAAGCAATGGGGC
TACCCATTGACAAGATACTGGTGGCGACGAACGAGAATGATATTTTGCAC
CGTTTCTTTACGAGTGGGAAATATTGGAAGAAGGAGGTGCAGGCGACACT
GAGTCCGTCGATGGACATTTCAATTTGCAGTAATTTCGAACGGTTGTTGT
TTGATCTGGCGGGGAGAGATCCTGAGTTGCTTAGGGAATGGATGGAGGAG
TTCGAGAGAACGAAGAAGTTGACTCTTCCTCCCCCTACTCTAGCCAAGGC
GAGGGAGGACTTCATATCCTGTCGGGTCGATCAGCCGGCAATGATTGAGG
TGATGTTGTCCTTTCTACGGGATTATAACTACTTGTTATGCCCCCATAGC
GCGGTAGGGGTGACAGCAGCTAAGCAGTTGGCCATGTTGAATGCGGACAC
CATTTGCCTCGCGACTGCGCACCACGCCAAATTCTTGGATGCTACGTTAA
AGCATTTCCCCCTTGACGAGGTCGATGTGGAGGAGATTGAGGAGGAGGTG
CCAACGCAATTGCGAGATTTGGATCATCTACCTACGCGGTACGTAACCTT
GCCGGCGAGTGCATATTACGTGAAGAAGTACGTGTTGCAAACATTGGAGG
GGAAGGATAACGCGGCTCTCCTGAGGTGGTTGGCACTGGGGGGTTGGGTG
TGGGGGTGGGGAAGCGGAAAGCAGGGGAAGAGAAGACGGCAAGTATCGAT
GGTGGCGGCTGCAGCGGTTGCTGTAGCGGTGGTGGGGACGGTGGTGAGTG
GGTTGGAGGGATCACGGAGATGGAGGAGATAGATGGCGGACAGCAGCAGC
AGCAACAGCGGCACTGGAGGCAGTAGCAGCAGCGCCGGTGCCCATGGCGG
CGGGAACGGAGATCGCGAGCAGCAGTCCCAGCGGTCGCCTAACCAACTCC
GGCAAGGGTCCATCTCCGCCTCGCACTCCATCTCTATTTCTACACCTCAA
TTTCACAACGAACGGCATGGCTCTGCCCCCCCCTCAGCTCACCAACCCGC
CGGCCCTCAGTACCCACCCACTCACCGGGGTGTCCTGTACTGTTCCACCC
GCGGGGCTCGTCGCGACGTCACCTTCGAAGAGGTAGTCATGAGTGGCCTC
GCCCCGGATAAAGGTTTGTATGTCCCCCAAGAAATTCCGTACATCTCTCT
GGAGCAACTCGAAAAGCTTCGTGATGCCTCCTTCGTTGAACTGGCCAATT
ACATCATGCGTTTATTCATCGGCCCAGAGGACATCCCTCCTGAGAACCTA
CGAGTACTCATTGAGAGCAGCACCAAGTACTTCCGTGTCCATGAGGTGGC
CCCAGTGAGAAAAGTGGGTCCCACGTGGGTTTTGGAGCTCTTTCATGGCC
CGACGTTCGCGTTCAAGGACGTGGCGTTGCAGTTTTTGGGGAACATGTTT
GAGTATTTCTTGGCGAAGAAGAAGGGGGGCCCGGACGCGAAATTGACGGT
GTTGGGGGCCACAAGTGGAGATACAGGCTCGGCAGCGATTCATGGATTGA
GGGGGAAGAAGAACATTCAGGTGTTCGTTCTGTATCCCAAGGGGAGGGTG
AGCGAGGTGCAGGAGAGGCAAATGACCACGGTGTTGGACCGCAACGTCCA
TTGCATTGCCGTGGAAGGTGCCACCTTTGATGATTGCCAGGACATCGTCA
AAGCGGCTTTTCAGGACGAGGGGTTCCGGGATAATGCCAATCTGGGGGCT
GTTAATTCGATTAATTGGGCCAGGGTGCTTGCGCAGATCACATATTTTTT
CCACGCGTACTTTCGTAAGAAAAAGCGGTCTAAGAGCTTGCCAAAACTGT
CTTTCTCGGTGCCGACGGGGAATTTCGGAGATGCATTGGCGGGGTACTAC
GCCAAAGCAATGGGGCTACCCATTGACAAGATACTGGTGGCGACGAACGA
GAATGATATTTTGCACCGTTTCTTTACGAGTGGGAAATATTGGAAGAAGG
AGGTGCAGGCGACACTGAGTCCGTCGATGGACATTTCAATTTGCAGTAAT
TTCGAACGGTTGTTGTTTGATCTGGCGGGGAGAGATCCTGAGTTGCTTAG
GGAATGGATGGAGGAGTTCGAGAGAACGAAGAAGTTGACTCTTCCTCCCC
CTACTCTAGCCAAGGCGAGGGAGGACTTCATATCCTGTCGGGTCGATCAG
CCGGCAATGATTGAGGTGATGTTGTCCTTTCTACGGGATTATAACTACTT
GTTATGCCCCCATAGCGCGGTAGGGGTGACAGCAGCTAAGCAGTTGGCCA
TGTTGAATGCGGACACCATTTGCCTCGCGACTGCGCACCACGCCAAATTC
TTGGATGCTACGTTAAAGCATTTCCCCCTTGACGAGGTCGATGTGGAGGA
GATTGAGGAGGAGGTGCCAACGCAATTGCGAGATTTGGATCATCTACCTA
CGCGGTACGTAACCTTGCCGGCGAGTGCATATTACGTGAAGAAGTACGTG
TTGCAAACATTGGAGGGGAAGGATAACGCGGCTCTCCTGAGGTGGTTGGC
ACTGGGGGGTTGGGTGTGGGGGTGGGGAAGCGGAAAGCAGGGGAAGAGAA
GACGGCAAGTATCGATGGTGGCGGCTGCAGCGGTTGCTGTAGCGGTGGTG
GGGACGGTGGTGAGTGGGTTGGAGGGATCACGGAGATGGAGGAGATAGAT
GGCGGACAGCAGCAGCAGCAACAGCGGCACTGGAGGCAGTAGCAGCAGCG
CCGGTGCCCATGGCGGCGGGAACGGAGATCGCGAGCAGCAGTCCCAGCGG
TCGCCTAACCAACTCCGGCAAGGGTCCATCTCCGCCTCGCACTCCATCTC
TATTTCTACACCTCAATTTCACAACGAACGGCATGGCTCTGCCCCCCCCT
CAGCTCACCAACCCGCCGGCCCTCAGTACCCACCCACTCACCGGGGTGTC
CTGTACTGTTCCACCCGCGGGGCTCGTCGCGACGTCACCTTCGAAGAGGT
AGTCATGAGTGGCCTCGCCCCGGATAAAGGTTTGTATGTCCCCCAAGAAA
TTCCGTACATCTCTCTGGAGCAACTCGAAAAGCTTCGTGATGCCTCCTTC
GTTGAACTGGCCAATTACATCATGCGTTTATTCATCGGCCCAGAGGACAT
CCCTCCTGAGAACCTACGAGTACTCATTGAGAGCAGCACCAAGTACTTCC
GTGTCCATGAGGTGGCCCCAGTGAGAAAAGTGGGTCCCACGTGGGTTTTG
GAGCTCTTTCATGGCCCGACGTTCGCGTTCAAGGACGTGGCGTTGCAGTT
TTTGGGGAACATGTTTGAGTATTTCTTGGCGAAGAAGAAGGGGGGCCCGG
ACGCGAAATTGACGGTGTTGGGGGCCACAAGTGGAGATACAGGCTCGGCA
GCGATTCATGGATTGAGGGGGAAGAAGAACATTCAGGTGTTCGTTCTGTA
TCCCAAGGGGAGGGTGAGCGAGGTGCAGGAGAGGCAAATGACCACGGTGT
TGGACCGCAACGTCCATTGCATTGCCGTGGAAGGTGCCACCTTTGATGAT
TGCCAGGACATCGTCAAAGCGGCTTTTCAGGACGAGGGGTTCCGGGATAA
TGCCAATCTGGGGGCTGTTAATTCGATTAATTGGGCCAGGGTGCTTGCGC
AGATCACATATTTTTTCCACGCGTACTTTCGT back to top
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