jgi.p|Nanoce1779_2|550737, gene_123 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|550737
Unique Namegene_123
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_3:325141..328108 -

Link to JBrowse

Properties
Property NameValue
TranscriptId550823
ProteinId550737
Product nameTryptophan synthase beta subunit-like PLP-dependent enzyme
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:325141..328108 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004795threonine synthase activity
GO:0003824catalytic activity
GO:0030170pyridoxal phosphate binding
Vocabulary: Biological Process
TermDefinition
GO:0009088threonine biosynthetic process
GO:0008152metabolic process
GO:0006520cellular amino acid metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL047ncniL047Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|550737mRNA_123-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|550737mRNA_123Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|550737

>mRNA_123-protein ID=mRNA_123-protein|Name=jgi.p|Nanoce1779_2|550737|organism=Nannochloropsis oceanica|type=polypeptide|length=622bp
MADSSSSNSGTGGSSSSAGAHGGGNGDREQQSQRSPNQLRQGSISASHSI
SISTPQFHNERHGSAPPSAHQPAGPQYPPTHRGVLYCSTRGARRDVTFEE
VVMSGLAPDKGLYVPQEIPYISLEQLEKLRDASFVELANYIMRLFIGPED
IPPENLRVLIESSTKYFRVHEVAPVRKVGPTWVLELFHGPTFAFKDVALQ
FLGNMFEYFLAKKKGGPDAKLTVLGATSGDTGSAAIHGLRGKKNIQVFVL
YPKGRVSEVQERQMTTVLDRNVHCIAVEGATFDDCQDIVKAAFQDEGFRD
NANLGAVNSINWARVLAQITYFFHAYFRKKKRSKSLPKLSFSVPTGNFGD
ALAGYYAKAMGLPIDKILVATNENDILHRFFTSGKYWKKEVQATLSPSMD
ISICSNFERLLFDLAGRDPELLREWMEEFERTKKLTLPPPTLAKAREDFI
SCRVDQPAMIEVMLSFLRDYNYLLCPHSAVGVTAAKQLAMLNADTICLAT
AHHAKFLDATLKHFPLDEVDVEEIEEEVPTQLRDLDHLPTRYVTLPASAY
YVKKYVLQTLEGKDNAALLRWLALGGWVWGWGSGKQGKRRRQVSMVAAAA
VAVAVVGTVVSGLEGSRRWRR*
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Synonyms
Publications