jgi.p|Nanoce1779_2|575557, mRNA_1157 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|575557
Unique Name	mRNA_1157
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1685
Alignment location	scaffold_2:1372002..1373831 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	575643
Track	FilteredModels2
ProteinId	575557

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1372002..1373831 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575557	gene_1157	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575557	mRNA_1157-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1157	CDS_1157	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1372002..1373831+
coding sequence from alignment at scaffold_2:1372002..1373831+

mRNA sequence

>mRNA_1157 ID=mRNA_1157|Name=jgi.p|Nanoce1779_2|575557|organism=Nannochloropsis oceanica|type=mRNA|length=1685bp
CAGAACACGGGCAAATGGCTCCGTTAACGACTTATGTCAAGCCCTTGCTG
GTACTCGGCGCGGCCACCGCCACCCTGACCAATGCCTTCGTGCTTCCCTC
AGCCCGCCCCCTGCCCAGCTCCGCCATGGCCACCGCCGCAGCCAAGACCT
CCCCCCTTTTCACGCGCACCACCTCTTCTATCCCTACCACGACCCGGCCT
GCTCAGGACACAGCTGTATTTGCCACCAACTTTTTCGACTCGTTCTTTGC
GCCCAAGAACAAGGGAGCAGGCAAAGCCGGCAACAAAAAGACCGTCGTGC
TCACCGGCACCTCCTCCGGCCTCGGGAAGGGCACTCTCAAGGCCCTGTGC
GCCCGTGGCGACTATTTTGTTATCTGTGGCGTGCGAGACGTGGCCAAGAT
GCAGCGTGTGGCGGAAGAATTGAACCTGGACCCCTCCTTGTTCACCATCC
GCTGCCTCGACTTGTCCTCCTTCGATTCCGTCCGCAAGTTCGCCAAGGAC
GTGAAAGCCGTTAAGGGTGGCAAGCCCCTGGACGCCTTGGTCTGCAATGC
TGCTGTGTACCTCCCTGCTCTTCCCACCCCTACCTTCACTCCCGACGGAA
TTGAGGAGTCGTTGCAAATTAACCACCTGTCGCATTTCTTGTTGGTTTCT
CTCCTGATCGAGGACTTGAAAAAGGCCAAGGACCCCCGGTGCATCATCGT
CGGCTCTATCACCGGTAATGACAATACCATCGCGGGTGCATTTGTCTGGC
CTCGGGCGTCCCTGGGTGACTTGAAGGGCATGGAGGAGGGGGCCAAGATG
CCCGTGTCGATGATCGATGGCAAGGCTTTCAATGGTGCCAAGGCATATAA
GGACAGCAAGATGTGCAACATGATGACGGTCAACGAGCTCCATCGCCGCT
ACCACGACTCGACGGGAATCACCTTCAATACCATGTACCCAGGCTGCATC
GCCGAGACGGCTCTCTTCCGGGAGAAACGACAATGGTTCCGGACGATTTT
CCCCCTCTTCATGAAGTACGTCACGGGGGGCTATGTCTCTGAGGACGAGG
CGGGAGAGAGGCTGGCTCAGACGGTGTGGGACCCCGAGCTGAAGAAGAGC
GGGCAGTACTGGTGCTGGAACGGCCAGGCTCAGCAGTTCGGGTACTACGA
TCCGGCCACGAAGCAGGTGCGAGGCGCGGGGGGCAGTGGAGGGACGGTTT
TTGAGGGGAAGCTGGCGGGGCAGGTGATGGATGGTGTGAAGGCGGAGAAG
ATGTGGGAGTTGAGCAGTGCAATTACAGGCGCGGCCTGGCCCAAGGTGGG
AGAGAGGGAGCTAGCGAATGTGTAGAGGGTAGGGAAGGGGAGATGACCGT
TTTTGAGAAGAGAAAGTGTGTGAGTATAGAGGGGGTCGGGGTGGATGGGA
GAGAAGGAGATTGGAGGTGGATATAGAGGCTGCATGATTTGTGTCCGTGC
TATGTGTGCGTATGGTGCATTGGATTCAATGGTTCTGAAAGGACACGGTG
AATACATAAACAACCACGCTTTTTGGTGGGATGTGAAGGGGAAGGGAGGA
GAGGCAAATGAGAAATGGGATATCGAAGCCCCCACAACAATTGAACGCAG
GTTTATTTATTGTCATGCCATATGCTCGATGCAGGCATTTTTGGTTTAGA
GTAAGAGGCAAAGTTGAAGTCGCGATCCTCGGTTT

protein sequence of jgi.p|Nanoce1779_2|575557

>mRNA_1157-protein ID=mRNA_1157-protein|Name=jgi.p|Nanoce1779_2|575557|organism=Nannochloropsis oceanica|type=polypeptide|length=437bp
MAPLTTYVKPLLVLGAATATLTNAFVLPSARPLPSSAMATAAAKTSPLFT
RTTSSIPTTTRPAQDTAVFATNFFDSFFAPKNKGAGKAGNKKTVVLTGTS
SGLGKGTLKALCARGDYFVICGVRDVAKMQRVAEELNLDPSLFTIRCLDL
SSFDSVRKFAKDVKAVKGGKPLDALVCNAAVYLPALPTPTFTPDGIEESL
QINHLSHFLLVSLLIEDLKKAKDPRCIIVGSITGNDNTIAGAFVWPRASL
GDLKGMEEGAKMPVSMIDGKAFNGAKAYKDSKMCNMMTVNELHRRYHDST
GITFNTMYPGCIAETALFREKRQWFRTIFPLFMKYVTGGYVSEDEAGERL
AQTVWDPELKKSGQYWCWNGQAQQFGYYDPATKQVRGAGGSGGTVFEGKL
AGQVMDGVKAEKMWELSSAITGAAWPKVGERELANV*

mRNA from alignment at scaffold_2:1372002..1373831+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1157 ID=mRNA_1157|Name=jgi.p|Nanoce1779_2|575557|organism=Nannochloropsis oceanica|type=mRNA|length=1830bp|location=Sequence derived from alignment at scaffold_2:1372002..1373831+ (Nannochloropsis oceanica)
CAGAACACGGGCAAATGGCTCCGTTAACGACTTATGTCAAGCCCTTGCTG
GTACTCGGCGCGGCCACCGCCACCCTGACCAATGCCTTCGTGCTTCCCTC
AGCCCGCCCCCTGCCCAGCTCCGCCATGGCCACCGCCGCAGCCAAGACCT
CCCCCCTTTTCACGCGCACCACCTCTTCTATCCCTACCACGACCCGGCCT
GCTCAGGACACAGCTGTATTTGCCACCAACTTTTTCGACTCGTTCTTTGC
GCCCAAGAACAAGGGAGCAGGCAAAGCCGGCAACAAAAAGACCGTCGTGC
TCACCGGCACCTCCTCCGGCCTCGGGAAGGGCACTCTCAAGGCCCTGTGC
GCCCGTGGCGACTATTTTGTTATCTGTGGCGTGCGAGACGTGGCCAAGAT
GCAGCGTGTGGCGGAAGAATTGAACCTGGACCCCTCCTTGTTCACCATCC
GCTGCCTCGACTTGTCCTCCTTCGATTCCGTCCGCAAGTTCGCCAAGGAC
GTGAAAGCCGTTAAGGGTGGCAAGCCCCTGGACGCCTTGGTCTGCAATGC
TGCTGTGTACCTCCCTGCTCTTCCCACCCCTACCTTCACTCCCGACGGAA
TTGAGGAGTCGTTGCAAATTAACCACCTGTCGCATTTCTTGTTGGTTTCT
CTCCTGATCGAGGACTTGAAAAAGGCCAAGGACCCCCGGTGCATCATCGT
CGGCTCTATCACCGGTAATGACAATACCATCGCGGGTGCATTTGTCTGGC
CTCGGGCGTCCCTGGGTGACTTGAAGGGCATGGAGGAGGGGGCCAAGATG
CCCGTGTCGATGATCGATGGCAAGGCTTTCAATGGTGCCAAGGCATATAA
GGACAGCAAGGTAGGGAATGGAGGGAGCGAGGGAGGGAGAGAAAGAGTGC
ATCGGAGTGTTTGTTGCTCGTCTTTTTCATTCGACATAGCAAACGCATCT
TCATCTCATATAAACCCTCCCTCGCTCCTCTCAACCCGTCCGTCCTTCCC
CACAGATGTGCAACATGATGACGGTCAACGAGCTCCATCGCCGCTACCAC
GACTCGACGGGAATCACCTTCAATACCATGTACCCAGGCTGCATCGCCGA
GACGGCTCTCTTCCGGGAGAAACGACAATGGTTCCGGACGATTTTCCCCC
TCTTCATGAAGTACGTCACGGGGGGCTATGTCTCTGAGGACGAGGCGGGA
GAGAGGCTGGCTCAGACGGTGTGGGACCCCGAGCTGAAGAAGAGCGGGCA
GTACTGGTGCTGGAACGGCCAGGCTCAGCAGTTCGGGTACTACGATCCGG
CCACGAAGCAGGTGCGAGGCGCGGGGGGCAGTGGAGGGACGGTTTTTGAG
GGGAAGCTGGCGGGGCAGGTGATGGATGGTGTGAAGGCGGAGAAGATGTG
GGAGTTGAGCAGTGCAATTACAGGCGCGGCCTGGCCCAAGGTGGGAGAGA
GGGAGCTAGCGAATGTGTAGAGGGTAGGGAAGGGGAGATGACCGTTTTTG
AGAAGAGAAAGTGTGTGAGTATAGAGGGGGTCGGGGTGGATGGGAGAGAA
GGAGATTGGAGGTGGATATAGAGGCTGCATGATTTGTGTCCGTGCTATGT
GTGCGTATGGTGCATTGGATTCAATGGTTCTGAAAGGACACGGTGAATAC
ATAAACAACCACGCTTTTTGGTGGGATGTGAAGGGGAAGGGAGGAGAGGC
AAATGAGAAATGGGATATCGAAGCCCCCACAACAATTGAACGCAGGTTTA
TTTATTGTCATGCCATATGCTCGATGCAGGCATTTTTGGTTTAGAGTAAG
AGGCAAAGTTGAAGTCGCGATCCTCGGTTT

Coding sequence (CDS) from alignment at scaffold_2:1372002..1373831+

>mRNA_1157 ID=mRNA_1157|Name=jgi.p|Nanoce1779_2|575557|organism=Nannochloropsis oceanica|type=CDS|length=2622bp|location=Sequence derived from alignment at scaffold_2:1372002..1373831+ (Nannochloropsis oceanica)
ATGGCTCCGTTAACGACTTATGTCAAGCCCTTGCTGGTACTCGGCGCGGC
CACCGCCACCCTGACCAATGCCTTCGTGCTTCCCTCAGCCCGCCCCCTGC
CCAGCTCCGCCATGGCCACCGCCGCAGCCAAGACCTCCCCCCTTTTCACG
CGCACCACCTCTTCTATCCCTACCACGACCCGGCCTGCTCAGGACACAGC
TGTATTTGCCACCAACTTTTTCGACTCGTTCTTTGCGCCCAAGAACAAGG
GAGCAGGCAAAGCCGGCAACAAAAAGACCGTCGTGCTCACCGGCACCTCC
TCCGGCCTCGGGAAGGGCACTCTCAAGGCCCTGTGCGCCCGTGGCGACTA
TTTTGTTATCTGTGGCGTGCGAGACGTGGCCAAGATGCAGCGTGTGGCGG
AAGAATTGAACCTGGACCCCTCCTTGTTCACCATCCGCTGCCTCGACTTG
TCCTCCTTCGATTCCGTCCGCAAGTTCGCCAAGGACGTGAAAGCCGTTAA
GGGTGGCAAGCCCCTGGACGCCTTGGTCTGCAATGCTGCTGTGTACCTCC
CTGCTCTTCCCACCCCTACCTTCACTCCCGACGGAATTGAGGAGTCGTTG
CAAATTAACCACCTGTCGCATTTCTTGTTGGTTTCTCTCCTGATCGAGGA
CTTGAAAAAGGCCAAGGACCCCCGGTGCATCATCGTCGGCTCTATCACCG
GTAATGACAATACCATCGCGGGTGCATTTGTCTGGCCTCGGGCGTCCCTG
GGTGACTTGAAGGGCATGGAGGAGGGGGCCAAGATGCCCGTGTCGATGAT
CGATGGCAAGGCTTTCAATGGTGCCAAGGCATATAAGGACAGCAAGATGT
GCAACATGATGACGGTCAACGAGCTCCATCGCCGCTACCACGACTCGACG
GGAATCACCTTCAATACCATGTACCCAGGCTGCATCGCCGAGACGGCTCT
CTTCCGGGAGAAACGACAATGGTTCCGGACGATTTTCCCCCTCTTCATGA
AGTACGTCACGGGGGGCTATGTCTCTGAGGACGAGGCGGGAGAGAGGCTG
GCTCAGACGGTGTGGGACCCCGAGCTGAAGAAGAGCGGGCAGTACTGGTG
CTGGAACGGCCAGGCTCAGCAGTTCGGGTACTACGATCCGGCCACGAAGC
AGGTGCGAGGCGCGGGGGGCAGTGGAGGGACGGTTTTTGAGGGGAAGCTG
GCGGGGCAGGTGATGGATGGTGTGAAGGCGGAGAAGATGTGGGAGTTGAG
CAGTGCAATTACAGGCGCGGCCTGGCCCAAGGTGGGAGAGAGGGAGCTAG
CGAATGTGTAGATGGCTCCGTTAACGACTTATGTCAAGCCCTTGCTGGTA
CTCGGCGCGGCCACCGCCACCCTGACCAATGCCTTCGTGCTTCCCTCAGC
CCGCCCCCTGCCCAGCTCCGCCATGGCCACCGCCGCAGCCAAGACCTCCC
CCCTTTTCACGCGCACCACCTCTTCTATCCCTACCACGACCCGGCCTGCT
CAGGACACAGCTGTATTTGCCACCAACTTTTTCGACTCGTTCTTTGCGCC
CAAGAACAAGGGAGCAGGCAAAGCCGGCAACAAAAAGACCGTCGTGCTCA
CCGGCACCTCCTCCGGCCTCGGGAAGGGCACTCTCAAGGCCCTGTGCGCC
CGTGGCGACTATTTTGTTATCTGTGGCGTGCGAGACGTGGCCAAGATGCA
GCGTGTGGCGGAAGAATTGAACCTGGACCCCTCCTTGTTCACCATCCGCT
GCCTCGACTTGTCCTCCTTCGATTCCGTCCGCAAGTTCGCCAAGGACGTG
AAAGCCGTTAAGGGTGGCAAGCCCCTGGACGCCTTGGTCTGCAATGCTGC
TGTGTACCTCCCTGCTCTTCCCACCCCTACCTTCACTCCCGACGGAATTG
AGGAGTCGTTGCAAATTAACCACCTGTCGCATTTCTTGTTGGTTTCTCTC
CTGATCGAGGACTTGAAAAAGGCCAAGGACCCCCGGTGCATCATCGTCGG
CTCTATCACCGGTAATGACAATACCATCGCGGGTGCATTTGTCTGGCCTC
GGGCGTCCCTGGGTGACTTGAAGGGCATGGAGGAGGGGGCCAAGATGCCC
GTGTCGATGATCGATGGCAAGGCTTTCAATGGTGCCAAGGCATATAAGGA
CAGCAAGATGTGCAACATGATGACGGTCAACGAGCTCCATCGCCGCTACC
ACGACTCGACGGGAATCACCTTCAATACCATGTACCCAGGCTGCATCGCC
GAGACGGCTCTCTTCCGGGAGAAACGACAATGGTTCCGGACGATTTTCCC
CCTCTTCATGAAGTACGTCACGGGGGGCTATGTCTCTGAGGACGAGGCGG
GAGAGAGGCTGGCTCAGACGGTGTGGGACCCCGAGCTGAAGAAGAGCGGG
CAGTACTGGTGCTGGAACGGCCAGGCTCAGCAGTTCGGGTACTACGATCC
GGCCACGAAGCAGGTGCGAGGCGCGGGGGGCAGTGGAGGGACGGTTTTTG
AGGGGAAGCTGGCGGGGCAGGTGATGGATGGTGTGAAGGCGGAGAAGATG
TGGGAGTTGAGCAGTGCAATTACAGGCGCGGCCTGGCCCAAGGTGGGAGA
GAGGGAGCTAGCGAATGTGTAG

Synonyms

Publications