jgi.p|Nanoce1779_2|575557, gene_1157 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575557
Unique Namegene_1157
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_2:1372002..1373831 +

Link to JBrowse

Properties
Property NameValue
TranscriptId575643
ProteinId575557
Product namehypothetical protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1372002..1373831 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0009507chloroplast
Vocabulary: Biological Process
TermDefinition
GO:0015995chlorophyll biosynthetic process
GO:0019685photosynthesis, dark reaction
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016630protochlorophyllide reductase activity
GO:0016491oxidoreductase activity
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL032ncniL032Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05690NO02G05690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575557mRNA_1157-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575557mRNA_1157Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|575557

>mRNA_1157-protein ID=mRNA_1157-protein|Name=jgi.p|Nanoce1779_2|575557|organism=Nannochloropsis oceanica|type=polypeptide|length=437bp
MAPLTTYVKPLLVLGAATATLTNAFVLPSARPLPSSAMATAAAKTSPLFT
RTTSSIPTTTRPAQDTAVFATNFFDSFFAPKNKGAGKAGNKKTVVLTGTS
SGLGKGTLKALCARGDYFVICGVRDVAKMQRVAEELNLDPSLFTIRCLDL
SSFDSVRKFAKDVKAVKGGKPLDALVCNAAVYLPALPTPTFTPDGIEESL
QINHLSHFLLVSLLIEDLKKAKDPRCIIVGSITGNDNTIAGAFVWPRASL
GDLKGMEEGAKMPVSMIDGKAFNGAKAYKDSKMCNMMTVNELHRRYHDST
GITFNTMYPGCIAETALFREKRQWFRTIFPLFMKYVTGGYVSEDEAGERL
AQTVWDPELKKSGQYWCWNGQAQQFGYYDPATKQVRGAGGSGGTVFEGKL
AGQVMDGVKAEKMWELSSAITGAAWPKVGERELANV*
back to top
Synonyms
Publications