jgi.p|Nanoce1779_2|379923, mRNA_10614 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|379923
Unique Name	mRNA_10614
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2739
Alignment location	scaffold_62:24344..27082 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	380009
Track	FilteredModels2
ProteinId	379923

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_62	supercontig	scaffold_62:24344..27082 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|379923	gene_10614	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|379923	mRNA_10614-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10614	CDS_10614	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_62:24344..27082+
coding sequence from alignment at scaffold_62:24344..27082+

mRNA sequence

>mRNA_10614 ID=mRNA_10614|Name=jgi.p|Nanoce1779_2|379923|organism=Nannochloropsis oceanica|type=mRNA|length=2739bp
GATTTTTCACGCCGCCTTGGCCGAGTATGCACAAGAAGCACCTCCCTTGT
TTCACGCACATATACAGCCATTATTGCAGTTTTTGATGGACTTGCTGCGC
GACGCTAATTGTCATGTTGGAAGTGACGACTGTGCACCTTCCTTGGATTC
AAGGGGAAAAGTCCAGGGGCAGAGTGAGAAAATGACAAGGGCCAGCGATA
AGACATTCAAGGAAGAGTCAAATGATGTACATAGTATTAGGACAGGCAAC
AATTGTGGTTCCAAGGAGGATGACGATGACAGAGAAAAAGAAACCAATAT
GGAAGAACAAGACATTCTCTCTTTGGCGGTCCTGCAATGCCTCCACCTTG
TCATCCGCGCCGGCAAGCACCATTTGGCAAATCACCTTCAAATTCTCCTT
AGTCCTCTCCTGCTTCAATATCTCCTCTATCCTACCTACACCTCCACAAT
CCTCCTCCTTCTCACCAAGCTTTCCCAGCATGTGGAGCTCTCCCTCCTCC
TTCCGCCCCTCCTTCATCTTCACGCATTCACACACCCTTCCCCTCTTGTC
CGGGCTGCTGCTTTCCGAATCGTGTGCATAGGACTGACAGTAAAAGATAA
AGTTGCCTTCACCAGTGTAACTGACCGCGTTATACAGGAGAGTCTGCTAA
CGATTGCCTTGGACGGAGTCGAAGACGAGGAGGAGGAGGTAAAGGAGGCG
GGCATCGAACTATTGTGGCTTGTGTATGATCCTTTCTTCTCAATGCAAAA
GAAGATAGAAGCAAGAGAAGGTGAAATAAAGAATGAACGCAAAAGCTTTT
TTTCTACTTTCGTGAGGGAGCAAGGCGGAGAAACCTTGAAGGCCGATGCC
AGGAGCTGCCTGCTTGTGAAGGTGTTAGAGGAGAACAAGGAAGAGGGGCA
GGGCGAGGAGCGGCAACAAGAGCAGCAAGTGCTACAAAAACAGCTGCAGC
AGCAGCAGGAGCAGCAGCAAGTGGAGAAAGATCAAATCCAGGAACGCGGA
AAGGAGAAACCGCAACAGGTGACAAAGCAGGAAGCCCCCCATTCGCCACA
AAGTGCTGCATCCCTCGTAAACCGCGCCAAGACTTCCAACTTTAGATGGC
AGGCCTCGGACTGGTCTTTGATTCCTCGCCCTACGTTTGCAACAAAACCT
CGATCATCCGAGATAAAGGCATTTCCTCCGTCATCGTCTTGTGTTTCTTC
CGCCTCCACGTCTCCCCCTTCTTTTTTGTTTCCGCCCTTTTCTCCTCCTT
CTCCTCCAAGATCTTGTCGACAGCATACTCCCTCCATTCCTCAGCGATCT
CCAATACAAGAGAAGGGGCTGGTCCGGTGGCAAGACAATGATGATCTTGT
GGATGAAGGGCACCGGAAAGAGAACGCAAGTATCACTCACGCCGCTCCCT
TCTCATGTTCGCAACCGCAACGACGACAACGACAACGACAACGACAACGA
CCTTCGTCGGGACATCGTCCTATCTCCTCTCCTCCCCGCCACCTCCTTCA
TGGAAAAGGCCTTGTAGAATGGTGTGACGAAGAAGAGGAGGAAGAGAAGG
GCTGCAAGGAGGGATACACCGCAGCGACTGCCAACGATGACTATTCTTCT
ACACACGCTCCGTCGTCACAACCTCCGACTTCTCCATTCCGAAGTCGTCT
CTCCCGGCTTTCCCACACATCTTCTTCCTCTATGCCATTTCGATCTCCAC
TAATGCCATCTCCTTCTCCCCCCTCTGCTCTCCTCATAGAGTACCTCTCG
CCTGCTGACATTCATCCTCTTCCCCAGCCCAGCATCGCCCTTCCACTCCT
CCTTGAGTCCCTTCACACCGCTGATTGGCCCGAAAGCTTTCACGCCTTGA
CAACCGTCCGTCGTTTCGCCCATCAACACCTCGCCCTCCTTCTCACCCTC
CCTTCTGATCGGCTTCAGCTCCTCCTCCGTCAGGTTTTGCGGCATGTCAA
CAACCTGCGCTCGGCGGTGGCCAAAAACGCTTTGCTGGCTCTGGCTGACC
TCTGGGCCGGTTTAGCATCGTCACCGTCGTCGCTCTCTTCCTCGCCATTG
TCTTTGTCGAGTCGTCTTTCTTTTCCTTCTAAATCAAATGGCACAGAGAT
TACTGTCCAACGCGTGATGGAAGGGGAGCTTCCCGCCGTTATCCCGGTCC
TCCTTAAGCGCTTTTGTGACACGAACGATTTTCTGGTCGAGGCGGCGGAA
AGCGCTCTTAATACCATTATTCTCCACACACCCGACACAACGCGAGTCCT
CCACGCTTTTCTTTCCTTAGCATCGCATAAAAGTCCCACAGGCAGGAGTA
AGGTGGCGAGTCAGGTTTTGCGGTGTTTGCTGGTACTCACTTCTGCCGCT
GCTGGTTCACTTTCTAGCGCTGTTACTGCTGCATGCGGCGGTGTGTCGCC
GAGGAAGCGAAAGACGAAGATATCGATACCTGCGATGATGACGATAACAG
GCAAAAGGAATAATAACGCCAGCACTAGTGGTCTTTTGGGCAAGGATCTG
CAAGAATGGCTGCAGCTGGCCACGCAGCAGTGGCTAAAGGATGCCAATTG
CGAGACCAGAGCCCAGGGACGAAAGATTGCTGAAGTATTGCCCTTGTTAG
TGCAGAGATAAAGCAACTCTAAATCCAAAGGACGATGGAAAACTTCGGAC
GAAGGGAAGTGAAAATGATTTGGAGGTTGGCTAAGAAATGGATATTAGAT
CTATGCATCGAGGGGAAACCCAACTGACCTAATGATATA

protein sequence of jgi.p|Nanoce1779_2|379923

>mRNA_10614-protein ID=mRNA_10614-protein|Name=jgi.p|Nanoce1779_2|379923|organism=Nannochloropsis oceanica|type=polypeptide|length=842bp
MDLLRDANCHVGSDDCAPSLDSRGKVQGQSEKMTRASDKTFKEESNDVHS
IRTGNNCGSKEDDDDREKETNMEEQDILSLAVLQCLHLVIRAGKHHLANH
LQILLSPLLLQYLLYPTYTSTILLLLTKLSQHVELSLLLPPLLHLHAFTH
PSPLVRAAAFRIVCIGLTVKDKVAFTSVTDRVIQESLLTIALDGVEDEEE
EVKEAGIELLWLVYDPFFSMQKKIEAREGEIKNERKSFFSTFVREQGGET
LKADARSCLLVKVLEENKEEGQGEERQQEQQVLQKQLQQQQEQQQVEKDQ
IQERGKEKPQQVTKQEAPHSPQSAASLVNRAKTSNFRWQASDWSLIPRPT
FATKPRSSEIKAFPPSSSCVSSASTSPPSFLFPPFSPPSPPRSCRQHTPS
IPQRSPIQEKGLVRWQDNDDLVDEGHRKENASITHAAPFSCSQPQRRQRQ
RQRQRPSSGHRPISSPPRHLLHGKGLVEWCDEEEEEEKGCKEGYTAATAN
DDYSSTHAPSSQPPTSPFRSRLSRLSHTSSSSMPFRSPLMPSPSPPSALL
IEYLSPADIHPLPQPSIALPLLLESLHTADWPESFHALTTVRRFAHQHLA
LLLTLPSDRLQLLLRQVLRHVNNLRSAVAKNALLALADLWAGLASSPSSL
SSSPLSLSSRLSFPSKSNGTEITVQRVMEGELPAVIPVLLKRFCDTNDFL
VEAAESALNTIILHTPDTTRVLHAFLSLASHKSPTGRSKVASQVLRCLLV
LTSAAAGSLSSAVTAACGGVSPRKRKTKISIPAMMTITGKRNNNASTSGL
LGKDLQEWLQLATQQWLKDANCETRAQGRKIAEVLPLLVQR*

mRNA from alignment at scaffold_62:24344..27082+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10614 ID=mRNA_10614|Name=jgi.p|Nanoce1779_2|379923|organism=Nannochloropsis oceanica|type=mRNA|length=2739bp|location=Sequence derived from alignment at scaffold_62:24344..27082+ (Nannochloropsis oceanica)
GATTTTTCACGCCGCCTTGGCCGAGTATGCACAAGAAGCACCTCCCTTGT
TTCACGCACATATACAGCCATTATTGCAGTTTTTGATGGACTTGCTGCGC
GACGCTAATTGTCATGTTGGAAGTGACGACTGTGCACCTTCCTTGGATTC
AAGGGGAAAAGTCCAGGGGCAGAGTGAGAAAATGACAAGGGCCAGCGATA
AGACATTCAAGGAAGAGTCAAATGATGTACATAGTATTAGGACAGGCAAC
AATTGTGGTTCCAAGGAGGATGACGATGACAGAGAAAAAGAAACCAATAT
GGAAGAACAAGACATTCTCTCTTTGGCGGTCCTGCAATGCCTCCACCTTG
TCATCCGCGCCGGCAAGCACCATTTGGCAAATCACCTTCAAATTCTCCTT
AGTCCTCTCCTGCTTCAATATCTCCTCTATCCTACCTACACCTCCACAAT
CCTCCTCCTTCTCACCAAGCTTTCCCAGCATGTGGAGCTCTCCCTCCTCC
TTCCGCCCCTCCTTCATCTTCACGCATTCACACACCCTTCCCCTCTTGTC
CGGGCTGCTGCTTTCCGAATCGTGTGCATAGGACTGACAGTAAAAGATAA
AGTTGCCTTCACCAGTGTAACTGACCGCGTTATACAGGAGAGTCTGCTAA
CGATTGCCTTGGACGGAGTCGAAGACGAGGAGGAGGAGGTAAAGGAGGCG
GGCATCGAACTATTGTGGCTTGTGTATGATCCTTTCTTCTCAATGCAAAA
GAAGATAGAAGCAAGAGAAGGTGAAATAAAGAATGAACGCAAAAGCTTTT
TTTCTACTTTCGTGAGGGAGCAAGGCGGAGAAACCTTGAAGGCCGATGCC
AGGAGCTGCCTGCTTGTGAAGGTGTTAGAGGAGAACAAGGAAGAGGGGCA
GGGCGAGGAGCGGCAACAAGAGCAGCAAGTGCTACAAAAACAGCTGCAGC
AGCAGCAGGAGCAGCAGCAAGTGGAGAAAGATCAAATCCAGGAACGCGGA
AAGGAGAAACCGCAACAGGTGACAAAGCAGGAAGCCCCCCATTCGCCACA
AAGTGCTGCATCCCTCGTAAACCGCGCCAAGACTTCCAACTTTAGATGGC
AGGCCTCGGACTGGTCTTTGATTCCTCGCCCTACGTTTGCAACAAAACCT
CGATCATCCGAGATAAAGGCATTTCCTCCGTCATCGTCTTGTGTTTCTTC
CGCCTCCACGTCTCCCCCTTCTTTTTTGTTTCCGCCCTTTTCTCCTCCTT
CTCCTCCAAGATCTTGTCGACAGCATACTCCCTCCATTCCTCAGCGATCT
CCAATACAAGAGAAGGGGCTGGTCCGGTGGCAAGACAATGATGATCTTGT
GGATGAAGGGCACCGGAAAGAGAACGCAAGTATCACTCACGCCGCTCCCT
TCTCATGTTCGCAACCGCAACGACGACAACGACAACGACAACGACAACGA
CCTTCGTCGGGACATCGTCCTATCTCCTCTCCTCCCCGCCACCTCCTTCA
TGGAAAAGGCCTTGTAGAATGGTGTGACGAAGAAGAGGAGGAAGAGAAGG
GCTGCAAGGAGGGATACACCGCAGCGACTGCCAACGATGACTATTCTTCT
ACACACGCTCCGTCGTCACAACCTCCGACTTCTCCATTCCGAAGTCGTCT
CTCCCGGCTTTCCCACACATCTTCTTCCTCTATGCCATTTCGATCTCCAC
TAATGCCATCTCCTTCTCCCCCCTCTGCTCTCCTCATAGAGTACCTCTCG
CCTGCTGACATTCATCCTCTTCCCCAGCCCAGCATCGCCCTTCCACTCCT
CCTTGAGTCCCTTCACACCGCTGATTGGCCCGAAAGCTTTCACGCCTTGA
CAACCGTCCGTCGTTTCGCCCATCAACACCTCGCCCTCCTTCTCACCCTC
CCTTCTGATCGGCTTCAGCTCCTCCTCCGTCAGGTTTTGCGGCATGTCAA
CAACCTGCGCTCGGCGGTGGCCAAAAACGCTTTGCTGGCTCTGGCTGACC
TCTGGGCCGGTTTAGCATCGTCACCGTCGTCGCTCTCTTCCTCGCCATTG
TCTTTGTCGAGTCGTCTTTCTTTTCCTTCTAAATCAAATGGCACAGAGAT
TACTGTCCAACGCGTGATGGAAGGGGAGCTTCCCGCCGTTATCCCGGTCC
TCCTTAAGCGCTTTTGTGACACGAACGATTTTCTGGTCGAGGCGGCGGAA
AGCGCTCTTAATACCATTATTCTCCACACACCCGACACAACGCGAGTCCT
CCACGCTTTTCTTTCCTTAGCATCGCATAAAAGTCCCACAGGCAGGAGTA
AGGTGGCGAGTCAGGTTTTGCGGTGTTTGCTGGTACTCACTTCTGCCGCT
GCTGGTTCACTTTCTAGCGCTGTTACTGCTGCATGCGGCGGTGTGTCGCC
GAGGAAGCGAAAGACGAAGATATCGATACCTGCGATGATGACGATAACAG
GCAAAAGGAATAATAACGCCAGCACTAGTGGTCTTTTGGGCAAGGATCTG
CAAGAATGGCTGCAGCTGGCCACGCAGCAGTGGCTAAAGGATGCCAATTG
CGAGACCAGAGCCCAGGGACGAAAGATTGCTGAAGTATTGCCCTTGTTAG
TGCAGAGATAAAGCAACTCTAAATCCAAAGGACGATGGAAAACTTCGGAC
GAAGGGAAGTGAAAATGATTTGGAGGTTGGCTAAGAAATGGATATTAGAT
CTATGCATCGAGGGGAAACCCAACTGACCTAATGATATA

Coding sequence (CDS) from alignment at scaffold_62:24344..27082+

>mRNA_10614 ID=mRNA_10614|Name=jgi.p|Nanoce1779_2|379923|organism=Nannochloropsis oceanica|type=CDS|length=2526bp|location=Sequence derived from alignment at scaffold_62:24344..27082+ (Nannochloropsis oceanica)
ATGGACTTGCTGCGCGACGCTAATTGTCATGTTGGAAGTGACGACTGTGC
ACCTTCCTTGGATTCAAGGGGAAAAGTCCAGGGGCAGAGTGAGAAAATGA
CAAGGGCCAGCGATAAGACATTCAAGGAAGAGTCAAATGATGTACATAGT
ATTAGGACAGGCAACAATTGTGGTTCCAAGGAGGATGACGATGACAGAGA
AAAAGAAACCAATATGGAAGAACAAGACATTCTCTCTTTGGCGGTCCTGC
AATGCCTCCACCTTGTCATCCGCGCCGGCAAGCACCATTTGGCAAATCAC
CTTCAAATTCTCCTTAGTCCTCTCCTGCTTCAATATCTCCTCTATCCTAC
CTACACCTCCACAATCCTCCTCCTTCTCACCAAGCTTTCCCAGCATGTGG
AGCTCTCCCTCCTCCTTCCGCCCCTCCTTCATCTTCACGCATTCACACAC
CCTTCCCCTCTTGTCCGGGCTGCTGCTTTCCGAATCGTGTGCATAGGACT
GACAGTAAAAGATAAAGTTGCCTTCACCAGTGTAACTGACCGCGTTATAC
AGGAGAGTCTGCTAACGATTGCCTTGGACGGAGTCGAAGACGAGGAGGAG
GAGGTAAAGGAGGCGGGCATCGAACTATTGTGGCTTGTGTATGATCCTTT
CTTCTCAATGCAAAAGAAGATAGAAGCAAGAGAAGGTGAAATAAAGAATG
AACGCAAAAGCTTTTTTTCTACTTTCGTGAGGGAGCAAGGCGGAGAAACC
TTGAAGGCCGATGCCAGGAGCTGCCTGCTTGTGAAGGTGTTAGAGGAGAA
CAAGGAAGAGGGGCAGGGCGAGGAGCGGCAACAAGAGCAGCAAGTGCTAC
AAAAACAGCTGCAGCAGCAGCAGGAGCAGCAGCAAGTGGAGAAAGATCAA
ATCCAGGAACGCGGAAAGGAGAAACCGCAACAGGTGACAAAGCAGGAAGC
CCCCCATTCGCCACAAAGTGCTGCATCCCTCGTAAACCGCGCCAAGACTT
CCAACTTTAGATGGCAGGCCTCGGACTGGTCTTTGATTCCTCGCCCTACG
TTTGCAACAAAACCTCGATCATCCGAGATAAAGGCATTTCCTCCGTCATC
GTCTTGTGTTTCTTCCGCCTCCACGTCTCCCCCTTCTTTTTTGTTTCCGC
CCTTTTCTCCTCCTTCTCCTCCAAGATCTTGTCGACAGCATACTCCCTCC
ATTCCTCAGCGATCTCCAATACAAGAGAAGGGGCTGGTCCGGTGGCAAGA
CAATGATGATCTTGTGGATGAAGGGCACCGGAAAGAGAACGCAAGTATCA
CTCACGCCGCTCCCTTCTCATGTTCGCAACCGCAACGACGACAACGACAA
CGACAACGACAACGACCTTCGTCGGGACATCGTCCTATCTCCTCTCCTCC
CCGCCACCTCCTTCATGGAAAAGGCCTTGTAGAATGGTGTGACGAAGAAG
AGGAGGAAGAGAAGGGCTGCAAGGAGGGATACACCGCAGCGACTGCCAAC
GATGACTATTCTTCTACACACGCTCCGTCGTCACAACCTCCGACTTCTCC
ATTCCGAAGTCGTCTCTCCCGGCTTTCCCACACATCTTCTTCCTCTATGC
CATTTCGATCTCCACTAATGCCATCTCCTTCTCCCCCCTCTGCTCTCCTC
ATAGAGTACCTCTCGCCTGCTGACATTCATCCTCTTCCCCAGCCCAGCAT
CGCCCTTCCACTCCTCCTTGAGTCCCTTCACACCGCTGATTGGCCCGAAA
GCTTTCACGCCTTGACAACCGTCCGTCGTTTCGCCCATCAACACCTCGCC
CTCCTTCTCACCCTCCCTTCTGATCGGCTTCAGCTCCTCCTCCGTCAGGT
TTTGCGGCATGTCAACAACCTGCGCTCGGCGGTGGCCAAAAACGCTTTGC
TGGCTCTGGCTGACCTCTGGGCCGGTTTAGCATCGTCACCGTCGTCGCTC
TCTTCCTCGCCATTGTCTTTGTCGAGTCGTCTTTCTTTTCCTTCTAAATC
AAATGGCACAGAGATTACTGTCCAACGCGTGATGGAAGGGGAGCTTCCCG
CCGTTATCCCGGTCCTCCTTAAGCGCTTTTGTGACACGAACGATTTTCTG
GTCGAGGCGGCGGAAAGCGCTCTTAATACCATTATTCTCCACACACCCGA
CACAACGCGAGTCCTCCACGCTTTTCTTTCCTTAGCATCGCATAAAAGTC
CCACAGGCAGGAGTAAGGTGGCGAGTCAGGTTTTGCGGTGTTTGCTGGTA
CTCACTTCTGCCGCTGCTGGTTCACTTTCTAGCGCTGTTACTGCTGCATG
CGGCGGTGTGTCGCCGAGGAAGCGAAAGACGAAGATATCGATACCTGCGA
TGATGACGATAACAGGCAAAAGGAATAATAACGCCAGCACTAGTGGTCTT
TTGGGCAAGGATCTGCAAGAATGGCTGCAGCTGGCCACGCAGCAGTGGCT
AAAGGATGCCAATTGCGAGACCAGAGCCCAGGGACGAAAGATTGCTGAAG
TATTGCCCTTGTTAGTGCAGAGATAA

Synonyms

Publications