jgi.p|Nanoce1779_2|643332, mRNA_10605 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|643332
Unique NamemRNA_10605
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length690
Alignment locationscaffold_56:103604..105154 -

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Properties
Property NameValue
TranscriptId643418
TrackFilteredModels2
ProteinId643332
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:103604..105154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|643332gene_10605Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|643332mRNA_10605-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10605CDS_10605Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10605 ID=mRNA_10605|Name=jgi.p|Nanoce1779_2|643332|organism=Nannochloropsis oceanica|type=mRNA|length=690bp
AACAAGGAAGAAGCCAAGCTCTCGGCTAAAAACCGCAGTGAGACTCAACA
GCGTTCACGGATGTGGCAAACAGTGAGCAGCAGCAGCGAAAGTAGTAGTA
GCAGCAGCGGTGGCGGCGGTAGTAGCAGTGGCAGCAGGAGTGAGAGTGAG
GAGGAAGAGGGGCAGAAGGGAGAGACCCGGAAAGAAATGCGGAAGGAGGG
CATTGAGGAGGCAAACATGAACCAGTACGGAAAATTTGGCATCATCAGGG
AATCGGACTTTCATCGAAAGAAGAACGACTTCGAGGTCTGGTGCCAGGAG
ATTCAAAATTTGCCCGAGATTCCCCGCAATCACCACGAGGCCCTGAGGCT
GTTTCGGTACTATATGGAGGACTATAACACTGCCACGTTCCCCCACCCTA
AGTATTATAATGTGGAGGCGTTTGAGATGGACGAATACAAGAAAGGGCAG
CTGAAGGCCGCCTACAAGGAAGGGAGGGAGGGAGGGGTGTTCAACGACGA
GGAGGAGCGGCGGATGGAGGCGAGGAAGGGAGGGAAGGAGGAGGAGAAGG
CGAACTTGCAGTGGGCTCTCAAGATGATGAGTAAGGAGAAGAGGGAGGCG
CTGAAGGAGGAAGACCTCCTCCGGGCCAAGATGCAGCAGGCGTACAAGGC
TGGGGACCAGGCAACCGTCAAGGAAATTGAACGGCGTTGA
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protein sequence of jgi.p|Nanoce1779_2|643332

>mRNA_10605-protein ID=mRNA_10605-protein|Name=jgi.p|Nanoce1779_2|643332|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
NKEEAKLSAKNRSETQQRSRMWQTVSSSSESSSSSSGGGGSSSGSRSESE
EEEGQKGETRKEMRKEGIEEANMNQYGKFGIIRESDFHRKKNDFEVWCQE
IQNLPEIPRNHHEALRLFRYYMEDYNTATFPHPKYYNVEAFEMDEYKKGQ
LKAAYKEGREGGVFNDEEERRMEARKGGKEEEKANLQWALKMMSKEKREA
LKEEDLLRAKMQQAYKAGDQATVKEIERR*
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mRNA from alignment at scaffold_56:103604..105154-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10605 ID=mRNA_10605|Name=jgi.p|Nanoce1779_2|643332|organism=Nannochloropsis oceanica|type=mRNA|length=1551bp|location=Sequence derived from alignment at scaffold_56:103604..105154- (Nannochloropsis oceanica)
AACAAGGAAGAAGCCAAGCTCTCGGCTAAAAACCGCAGTGAGACTCAACA
GCGTTCACGGATGTGGCAAACAGTGAGCAGCAGCAGCGAAAGTAGTAGTA
GCAGCAGCGGTGGCGGCGGTAGTAGCAGTGGCAGCAGGAGTGAGAGTGAG
GAGGAAGAGGGGCAGAAGGGAGAGACCCGGAAAGAAATGCGGAAGGAGGG
CATTGAGGAGGCAAGTGGAGAGGATAGAGGGCTGCGAGGAAGGGAGAAAG
AGGGGGAGGAGGAAGAACAAGGAGAGGAGGAGGAGGAGAGGAAGGCAGCG
AAGAAACGAAGGCGGGAGAGAAAGGAGCGGAGGAGGAGGAAGGAGGAGAG
GAAGAAGAGAAGGAGGAAGGAAAAGAAGAAGGAGAGCAAGAAGCAAAAAA
GAAGTCGGACCATGAAAAGAAGAGAAAGAGGAAGGACAAGAGGGATGCGA
AGGTCAAAGGGAAGAAGAAGAGGAGTAAGAGGGAGGAACCTCCTCCTGTC
CCGGGGCTGTAGACATGAACCAGTACGGAAAATTTGGCATCATCAGGGTG
AGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGAGGAGAGAGGGAGC
GGGGCCGGTGAGACTTGTCCCTCTTGCTTCGAAGCACTGCGATCGATCGA
TATCTATGCGCGATTATCCATTCACAGCCCTCCCTCCCTCCCTCCCTCCT
TCCCTTTTCCCCTCCTTCCCTCGTTTCCCCTCCCTCCCTCCCTCCCTCCC
TCCCTTCCTCAGGAATCGGACTTTCATCGAAAGAAGAACGACTTCGAGGT
CTGGTGCCAGGAGATTCAAAATTTGCCCGAGATTCCCCGCAATCACCACG
AGGCCCTGAGGCTGTTTCGGTACTATATGGAGGTAGGAGGGAGTGAAGGA
GAGAGGAAGGAAGGAAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGGAACCAAAAGAA
CAGAGCTATGTGAGGAATTGACCTGTCCCTGTCTTTCTCCCTTTCTCCCT
CCCTCCCTCCCACCCTCCCTTCATCAGGACTATAACACTGCCACGTTCCC
CCACCCTAAGTATTATAATGTGGAGGCGTTTGAGATGGACGAATACAAGA
AAGGGCAGCTGAAGGCCGCCTACAAGGAAGGGAGGGAGGGAGGGGTGTTC
AACGACGAGGAGGAGCGGCGGATGGAGGCGAGGAAGGGAGGGAAGGAGGA
GGAGAAGGCGAACTTGCAGTGGGCTCTCAAGATGATGAGTAAGGAGAAGA
GGGAGGCGCTGAAGGAGGAAGACCTCCTCCGGGCCAAGATGCAGCAGGCG
TACAAGGTCGGGGGAGGGAGGGAGGGAGGGAGGGAGGGATGGGGAGGCAA
GCGATCGGATTAAATTGAACGCGAACGTGTACTCATCGTTGTCCTTCCCT
CCCTCCCTCCCTGCCTCCTTCCCTCCCTCCTCCCTCCCTCTCTCCCTTGC
CTCTCACAGGCTGGGGACCAGGCAACCGTCAAGGAAATTGAACGGCGTTG
A
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Coding sequence (CDS) from alignment at scaffold_56:103604..105154-

>mRNA_10605 ID=mRNA_10605|Name=jgi.p|Nanoce1779_2|643332|organism=Nannochloropsis oceanica|type=CDS|length=3450bp|location=Sequence derived from alignment at scaffold_56:103604..105154- (Nannochloropsis oceanica)
GCTGGGGACCAGGCAACCGTCAAGGAAATTGAACGGCGTTGAGACTATAA
CACTGCCACGTTCCCCCACCCTAAGTATTATAATGTGGAGGCGTTTGAGA
TGGACGAATACAAGAAAGGGCAGCTGAAGGCCGCCTACAAGGAAGGGAGG
GAGGGAGGGGTGTTCAACGACGAGGAGGAGCGGCGGATGGAGGCGAGGAA
GGGAGGGAAGGAGGAGGAGAAGGCGAACTTGCAGTGGGCTCTCAAGATGA
TGAGTAAGGAGAAGAGGGAGGCGCTGAAGGAGGAAGACCTCCTCCGGGCC
AAGATGCAGCAGGCGTACAAGGAATCGGACTTTCATCGAAAGAAGAACGA
CTTCGAGGTCTGGTGCCAGGAGATTCAAAATTTGCCCGAGATTCCCCGCA
ATCACCACGAGGCCCTGAGGCTGTTTCGGTACTATATGGAGACATGAACC
AGTACGGAAAATTTGGCATCATCAGGAACAAGGAAGAAGCCAAGCTCTCG
GCTAAAAACCGCAGTGAGACTCAACAGCGTTCACGGATGTGGCAAACAGT
GAGCAGCAGCAGCGAAAGTAGTAGTAGCAGCAGCGGTGGCGGCGGTAGTA
GCAGTGGCAGCAGGAGTGAGAGTGAGGAGGAAGAGGGGCAGAAGGGAGAG
ACCCGGAAAGAAATGCGGAAGGAGGGCATTGAGGAGGCAAGCTGGGGACC
AGGCAACCGTCAAGGAAATTGAACGGCGTTGAGACTATAACACTGCCACG
TTCCCCCACCCTAAGTATTATAATGTGGAGGCGTTTGAGATGGACGAATA
CAAGAAAGGGCAGCTGAAGGCCGCCTACAAGGAAGGGAGGGAGGGAGGGG
TGTTCAACGACGAGGAGGAGCGGCGGATGGAGGCGAGGAAGGGAGGGAAG
GAGGAGGAGAAGGCGAACTTGCAGTGGGCTCTCAAGATGATGAGTAAGGA
GAAGAGGGAGGCGCTGAAGGAGGAAGACCTCCTCCGGGCCAAGATGCAGC
AGGCGTACAAGGAATCGGACTTTCATCGAAAGAAGAACGACTTCGAGGTC
TGGTGCCAGGAGATTCAAAATTTGCCCGAGATTCCCCGCAATCACCACGA
GGCCCTGAGGCTGTTTCGGTACTATATGGAGACATGAACCAGTACGGAAA
ATTTGGCATCATCAGGAACAAGGAAGAAGCCAAGCTCTCGGCTAAAAACC
GCAGTGAGACTCAACAGCGTTCACGGATGTGGCAAACAGTGAGCAGCAGC
AGCGAAAGTAGTAGTAGCAGCAGCGGTGGCGGCGGTAGTAGCAGTGGCAG
CAGGAGTGAGAGTGAGGAGGAAGAGGGGCAGAAGGGAGAGACCCGGAAAG
AAATGCGGAAGGAGGGCATTGAGGAGGCAAGCTGGGGACCAGGCAACCGT
CAAGGAAATTGAACGGCGTTGAGACTATAACACTGCCACGTTCCCCCACC
CTAAGTATTATAATGTGGAGGCGTTTGAGATGGACGAATACAAGAAAGGG
CAGCTGAAGGCCGCCTACAAGGAAGGGAGGGAGGGAGGGGTGTTCAACGA
CGAGGAGGAGCGGCGGATGGAGGCGAGGAAGGGAGGGAAGGAGGAGGAGA
AGGCGAACTTGCAGTGGGCTCTCAAGATGATGAGTAAGGAGAAGAGGGAG
GCGCTGAAGGAGGAAGACCTCCTCCGGGCCAAGATGCAGCAGGCGTACAA
GGAATCGGACTTTCATCGAAAGAAGAACGACTTCGAGGTCTGGTGCCAGG
AGATTCAAAATTTGCCCGAGATTCCCCGCAATCACCACGAGGCCCTGAGG
CTGTTTCGGTACTATATGGAGACATGAACCAGTACGGAAAATTTGGCATC
ATCAGGAACAAGGAAGAAGCCAAGCTCTCGGCTAAAAACCGCAGTGAGAC
TCAACAGCGTTCACGGATGTGGCAAACAGTGAGCAGCAGCAGCGAAAGTA
GTAGTAGCAGCAGCGGTGGCGGCGGTAGTAGCAGTGGCAGCAGGAGTGAG
AGTGAGGAGGAAGAGGGGCAGAAGGGAGAGACCCGGAAAGAAATGCGGAA
GGAGGGCATTGAGGAGGCAAGCTGGGGACCAGGCAACCGTCAAGGAAATT
GAACGGCGTTGAGACTATAACACTGCCACGTTCCCCCACCCTAAGTATTA
TAATGTGGAGGCGTTTGAGATGGACGAATACAAGAAAGGGCAGCTGAAGG
CCGCCTACAAGGAAGGGAGGGAGGGAGGGGTGTTCAACGACGAGGAGGAG
CGGCGGATGGAGGCGAGGAAGGGAGGGAAGGAGGAGGAGAAGGCGAACTT
GCAGTGGGCTCTCAAGATGATGAGTAAGGAGAAGAGGGAGGCGCTGAAGG
AGGAAGACCTCCTCCGGGCCAAGATGCAGCAGGCGTACAAGGAATCGGAC
TTTCATCGAAAGAAGAACGACTTCGAGGTCTGGTGCCAGGAGATTCAAAA
TTTGCCCGAGATTCCCCGCAATCACCACGAGGCCCTGAGGCTGTTTCGGT
ACTATATGGAGACATGAACCAGTACGGAAAATTTGGCATCATCAGGAACA
AGGAAGAAGCCAAGCTCTCGGCTAAAAACCGCAGTGAGACTCAACAGCGT
TCACGGATGTGGCAAACAGTGAGCAGCAGCAGCGAAAGTAGTAGTAGCAG
CAGCGGTGGCGGCGGTAGTAGCAGTGGCAGCAGGAGTGAGAGTGAGGAGG
AAGAGGGGCAGAAGGGAGAGACCCGGAAAGAAATGCGGAAGGAGGGCATT
GAGGAGGCAAGCTGGGGACCAGGCAACCGTCAAGGAAATTGAACGGCGTT
GAGACTATAACACTGCCACGTTCCCCCACCCTAAGTATTATAATGTGGAG
GCGTTTGAGATGGACGAATACAAGAAAGGGCAGCTGAAGGCCGCCTACAA
GGAAGGGAGGGAGGGAGGGGTGTTCAACGACGAGGAGGAGCGGCGGATGG
AGGCGAGGAAGGGAGGGAAGGAGGAGGAGAAGGCGAACTTGCAGTGGGCT
CTCAAGATGATGAGTAAGGAGAAGAGGGAGGCGCTGAAGGAGGAAGACCT
CCTCCGGGCCAAGATGCAGCAGGCGTACAAGGAATCGGACTTTCATCGAA
AGAAGAACGACTTCGAGGTCTGGTGCCAGGAGATTCAAAATTTGCCCGAG
ATTCCCCGCAATCACCACGAGGCCCTGAGGCTGTTTCGGTACTATATGGA
GACATGAACCAGTACGGAAAATTTGGCATCATCAGGAACAAGGAAGAAGC
CAAGCTCTCGGCTAAAAACCGCAGTGAGACTCAACAGCGTTCACGGATGT
GGCAAACAGTGAGCAGCAGCAGCGAAAGTAGTAGTAGCAGCAGCGGTGGC
GGCGGTAGTAGCAGTGGCAGCAGGAGTGAGAGTGAGGAGGAAGAGGGGCA
GAAGGGAGAGACCCGGAAAGAAATGCGGAAGGAGGGCATTGAGGAGGCAA
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Synonyms
Publications