jgi.p|Nanoce1779_2|611491, mRNA_10603 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|611491
Unique Name	mRNA_10603
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1138
Alignment location	scaffold_56:99202..100783 -

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Properties


Property Name	Value
TranscriptId	611577
Track	FilteredModels2
ProteinId	611491

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_56	supercontig	scaffold_56:99202..100783 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611491	gene_10603	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611491	mRNA_10603-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10603	CDS_10603	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_56:99202..100783-
coding sequence from alignment at scaffold_56:99202..100783-

mRNA sequence

>mRNA_10603 ID=mRNA_10603|Name=jgi.p|Nanoce1779_2|611491|organism=Nannochloropsis oceanica|type=mRNA|length=1138bp
AGAGACTGCAAACCGCCAAGAACGGGGATAAGGCGCGAGCCGTCTCGTCG
GCATCATCTCAGTCACAGCACCACCCACGGCCAGGCGAAAACGTCCTCGC
CTGTAGCGTTCAATGCTCTCCGCGACTTACTGCTGTTGTGTAATGCTCAC
CATCAGCGTTGCTGCTCGGGCCTCCTTGTCCACCAACACCATGAGACGAA
CACTCCTTCTTCGTCCGTCGTCCCTTGCCACTGCCGCCTTTACAACTACC
ACCACTACCACCACCACCAACCCCACGATAAGGCGGCGTCGTCTCCTTCG
CCGTCGGGCCGTCAACCCCGAAGCAACCATGGCTGGTACTGTCAAGTTGT
ATGATCGACATGTCTTCGTCTTGGATCCCGTGCGTGGCCACGAGCTCTGG
CCGACGCACGTGGAAGAGTCGTCTTTCTTGCTGATCGCCGACTACAAGAA
AGCACAAAAAGCGCTCACGGCGGCGGCCGGCGCCGCGGGGACGGTTGGGA
AAATGTTCACGCTTAAATTCACCGTCGCCGAGGCCTTGGGCCATGCGTTG
GCCGCCCCCAGTGATGAGGAAAATCCGGCAATAACCTTCAAAGACCATGG
CCTGCACACAGTGCTCCTTTTCTCGCCCACGGCCCCCTCCCTCGCCATCC
GCGGTCTCACGAAAGCTGACATTCCAACCCTGGTCAAGCTCCTCGTCACT
AAGGAGAACTACTCAGCCGCCCTTCCTTCAGCCCTTCCTTCGCAGGTCAT
TATCCAACCTCTACCCGGCAAGGATCTATTTGTTTGCGCGCATGCCTCGC
GGGACATTCGGTGCAAGACCTGTGGGCCACGGCTGGTGGGGTGGTTGAAA
GAAGAGGCTATCAAAGCGGCGAAATCGGGGTCTGGAGAAGACGAAGTAAG
GATCTGGCCATCGTCGCATGTGGGAGGACACATGCACGCGGGAAATGTCT
TGGTTTTCCCCAGCGGGGATTGGTATGGCCAGGTGAATGACCCTGCAAAG
GCCCAGTTGGTGCTGGAGAAGAAGGGCGTGGAGGACGACCTGAAAAAGTT
GTGGCGGGGCCTTTGGCAACGTTTCAAACTGACGACGATGAGAGAGCCAG
ATCTTGGAACATTGGCAGTGTGGAGTGGCGGTGAGTAG

protein sequence of jgi.p|Nanoce1779_2|611491

>mRNA_10603-protein ID=mRNA_10603-protein|Name=jgi.p|Nanoce1779_2|611491|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MRRTLLLRPSSLATAAFTTTTTTTTTNPTIRRRRLLRRRAVNPEATMAGT
VKLYDRHVFVLDPVRGHELWPTHVEESSFLLIADYKKAQKALTAAAGAAG
TVGKMFTLKFTVAEALGHALAAPSDEENPAITFKDHGLHTVLLFSPTAPS
LAIRGLTKADIPTLVKLLVTKENYSAALPSALPSQVIIQPLPGKDLFVCA
HASRDIRCKTCGPRLVGWLKEEAIKAAKSGSGEDEVRIWPSSHVGGHMHA
GNVLVFPSGDWYGQVNDPAKAQLVLEKKGVEDDLKKLWRGLWQRFKLTTM
REPDLGTLAVWSGGE*

mRNA from alignment at scaffold_56:99202..100783-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10603 ID=mRNA_10603|Name=jgi.p|Nanoce1779_2|611491|organism=Nannochloropsis oceanica|type=mRNA|length=1582bp|location=Sequence derived from alignment at scaffold_56:99202..100783- (Nannochloropsis oceanica)
AGAGACTGCAAACCGCCAAGAACGGGGATAAGGCGCGAGCCGTCTCGTCG
GCATCATCTCAGTCACAGCACCACCCACGGCCAGGCGAAAACGTCCTCGC
CTGTAGCGTTCAATGCTCTCCGCGACTTACTGCTGTTGTGTAATGCTCAC
CATCAGCGTTGCTGCTCGGGCCTCCTTGTCCACCAACACCATGAGACGAA
CACTCCTTCTTCGTCCGTCGTCCCTTGCCACTGCCGCCTTTACAACTACC
ACCACTACCACCACCACCAACCCCACGATAAGGCGGCGTCGTCTCCTTCG
CCGTCGGGCCGTCAACCCCGAAGCAACCATGGCTGGTACTGTCAAGTTGT
ATGATCGACATGTACGTTTTGGATATTCCTTTTCTCGTCCTTTGGGATTT
GTTTCCGGCGCTAAGCCTCCCATTCACATACATAGGTCTTCGTCTTGGAT
CCCGTGCGTGGCCACGAGCTCTGGCCGACGCACGTGGAAGAGTCGTCTTT
CTTGCTGATCGCCGACTACAAGAAAGCACAAAAAGCGCTCACGGCGGCGG
CCGGCGCCGCGGGGACGGTTGGGAAAATGTTCACGCTTAAATTCACCGTC
GCCGAGGCCTTGGGCCATGCGTTGGCCGCCCCCAGTGATGGTATGTGAAC
TGGATCTGTTAAACTCAACGATTCCTCTCTGGAAATGATCCCTCGCGCAT
CTAGTTCTTCGGGGGGATGGGAGGTAGGAGGGGAGAAAGCTAAGACCGAG
ACACATCAATCAACTGGACCGTATCACCAAGCACTTACATTTTTCGCTCA
CTTAATGCCATAATCATCCATCCTTATTCTTCAGAGGAAAATCCGGCAAT
AACCTTCAAAGACCATGGCCTGCACACAGTGCTCCTTTTCTCGCCCACGG
CCCCCTCCCTCGCCATCCGCGGTCTCACGAAAGCTGACATTCCAACCCTG
GTCAAGCTCCTCGTCACTAAGGAGAACTACTCAGCCGCCCTTCCTTCAGC
CCTTCCTTCGCAGGTCATTATCCAACCTCTACCCGGCAAGGATCTATTTG
TTTGCGCGCATGCCTCGCGGGACATTCGGTGCAAGACCTGTGGGCCACGG
CTGGTGGGGTGGTTGAAAGAAGAGGCTATCAAAGCGGCGAAATCGGGGTC
TGGAGAAGACGAAGTAAGGATCTGGCCATCGTCGCATGTGGGAGGACACA
TGCACGCGGGAAATGTCTTGGTTTTCCCCAGCGGGGATTGGTATGGCCAG
GTGAATGACCCTGCAAAGGCCCAGTTGGTGCTGGAGAAGAAGGGCGTGGA
GGACGACCTGAAAAAGTTGTGGCGGGGGTCGCATAGGACTGAATCAAATG
CAGCAGGACGAGCTTGTGTCTGAAGGCAATTAAAAAAGAATGGACATGTG
ATGAAAGAAAGCAAGAGAACCAAATGGGTGGCGCCACTCGAGGTCCGGGA
AATAGAGCTGTTGTTTCTTCCCTCATTATATAGAGGCTGTGTTCTCGCCA
AAGCCTTTGGCAACGTTTCAAACTGACGACGATGAGAGAGCCAGATCTTG
GAACATTGGCAGTGTGGAGTGGCGGTGAGTAG

Coding sequence (CDS) from alignment at scaffold_56:99202..100783-

>mRNA_10603 ID=mRNA_10603|Name=jgi.p|Nanoce1779_2|611491|organism=Nannochloropsis oceanica|type=CDS|length=3792bp|location=Sequence derived from alignment at scaffold_56:99202..100783- (Nannochloropsis oceanica)
CCTTTGGCAACGTTTCAAACTGACGACGATGAGAGAGCCAGATCTTGGAA
CATTGGCAGTGTGGAGTGGCGGTGAGTAGAGGAAAATCCGGCAATAACCT
TCAAAGACCATGGCCTGCACACAGTGCTCCTTTTCTCGCCCACGGCCCCC
TCCCTCGCCATCCGCGGTCTCACGAAAGCTGACATTCCAACCCTGGTCAA
GCTCCTCGTCACTAAGGAGAACTACTCAGCCGCCCTTCCTTCAGCCCTTC
CTTCGCAGGTCATTATCCAACCTCTACCCGGCAAGGATCTATTTGTTTGC
GCGCATGCCTCGCGGGACATTCGGTGCAAGACCTGTGGGCCACGGCTGGT
GGGGTGGTTGAAAGAAGAGGCTATCAAAGCGGCGAAATCGGGGTCTGGAG
AAGACGAAGTAAGGATCTGGCCATCGTCGCATGTGGGAGGACACATGCAC
GCGGGAAATGTCTTGGTTTTCCCCAGCGGGGATTGGTATGGCCAGGTGAA
TGACCCTGCAAAGGCCCAGTTGGTGCTGGAGAAGAAGGGCGTGGAGGACG
ACCTGAAAAAGTTGTGGCGGGGGTCTTCGTCTTGGATCCCGTGCGTGGCC
ACGAGCTCTGGCCGACGCACGTGGAAGAGTCGTCTTTCTTGCTGATCGCC
GACTACAAGAAAGCACAAAAAGCGCTCACGGCGGCGGCCGGCGCCGCGGG
GACGGTTGGGAAAATGTTCACGCTTAAATTCACCGTCGCCGAGGCCTTGG
GCCATGCGTTGGCCGCCCCCAGTGATGATGAGACGAACACTCCTTCTTCG
TCCGTCGTCCCTTGCCACTGCCGCCTTTACAACTACCACCACTACCACCA
CCACCAACCCCACGATAAGGCGGCGTCGTCTCCTTCGCCGTCGGGCCGTC
AACCCCGAAGCAACCATGGCTGGTACTGTCAAGTTGTATGATCGACATCC
TTTGGCAACGTTTCAAACTGACGACGATGAGAGAGCCAGATCTTGGAACA
TTGGCAGTGTGGAGTGGCGGTGAGTAGAGGAAAATCCGGCAATAACCTTC
AAAGACCATGGCCTGCACACAGTGCTCCTTTTCTCGCCCACGGCCCCCTC
CCTCGCCATCCGCGGTCTCACGAAAGCTGACATTCCAACCCTGGTCAAGC
TCCTCGTCACTAAGGAGAACTACTCAGCCGCCCTTCCTTCAGCCCTTCCT
TCGCAGGTCATTATCCAACCTCTACCCGGCAAGGATCTATTTGTTTGCGC
GCATGCCTCGCGGGACATTCGGTGCAAGACCTGTGGGCCACGGCTGGTGG
GGTGGTTGAAAGAAGAGGCTATCAAAGCGGCGAAATCGGGGTCTGGAGAA
GACGAAGTAAGGATCTGGCCATCGTCGCATGTGGGAGGACACATGCACGC
GGGAAATGTCTTGGTTTTCCCCAGCGGGGATTGGTATGGCCAGGTGAATG
ACCCTGCAAAGGCCCAGTTGGTGCTGGAGAAGAAGGGCGTGGAGGACGAC
CTGAAAAAGTTGTGGCGGGGGTCTTCGTCTTGGATCCCGTGCGTGGCCAC
GAGCTCTGGCCGACGCACGTGGAAGAGTCGTCTTTCTTGCTGATCGCCGA
CTACAAGAAAGCACAAAAAGCGCTCACGGCGGCGGCCGGCGCCGCGGGGA
CGGTTGGGAAAATGTTCACGCTTAAATTCACCGTCGCCGAGGCCTTGGGC
CATGCGTTGGCCGCCCCCAGTGATGATGAGACGAACACTCCTTCTTCGTC
CGTCGTCCCTTGCCACTGCCGCCTTTACAACTACCACCACTACCACCACC
ACCAACCCCACGATAAGGCGGCGTCGTCTCCTTCGCCGTCGGGCCGTCAA
CCCCGAAGCAACCATGGCTGGTACTGTCAAGTTGTATGATCGACATCCTT
TGGCAACGTTTCAAACTGACGACGATGAGAGAGCCAGATCTTGGAACATT
GGCAGTGTGGAGTGGCGGTGAGTAGAGGAAAATCCGGCAATAACCTTCAA
AGACCATGGCCTGCACACAGTGCTCCTTTTCTCGCCCACGGCCCCCTCCC
TCGCCATCCGCGGTCTCACGAAAGCTGACATTCCAACCCTGGTCAAGCTC
CTCGTCACTAAGGAGAACTACTCAGCCGCCCTTCCTTCAGCCCTTCCTTC
GCAGGTCATTATCCAACCTCTACCCGGCAAGGATCTATTTGTTTGCGCGC
ATGCCTCGCGGGACATTCGGTGCAAGACCTGTGGGCCACGGCTGGTGGGG
TGGTTGAAAGAAGAGGCTATCAAAGCGGCGAAATCGGGGTCTGGAGAAGA
CGAAGTAAGGATCTGGCCATCGTCGCATGTGGGAGGACACATGCACGCGG
GAAATGTCTTGGTTTTCCCCAGCGGGGATTGGTATGGCCAGGTGAATGAC
CCTGCAAAGGCCCAGTTGGTGCTGGAGAAGAAGGGCGTGGAGGACGACCT
GAAAAAGTTGTGGCGGGGGTCTTCGTCTTGGATCCCGTGCGTGGCCACGA
GCTCTGGCCGACGCACGTGGAAGAGTCGTCTTTCTTGCTGATCGCCGACT
ACAAGAAAGCACAAAAAGCGCTCACGGCGGCGGCCGGCGCCGCGGGGACG
GTTGGGAAAATGTTCACGCTTAAATTCACCGTCGCCGAGGCCTTGGGCCA
TGCGTTGGCCGCCCCCAGTGATGATGAGACGAACACTCCTTCTTCGTCCG
TCGTCCCTTGCCACTGCCGCCTTTACAACTACCACCACTACCACCACCAC
CAACCCCACGATAAGGCGGCGTCGTCTCCTTCGCCGTCGGGCCGTCAACC
CCGAAGCAACCATGGCTGGTACTGTCAAGTTGTATGATCGACATCCTTTG
GCAACGTTTCAAACTGACGACGATGAGAGAGCCAGATCTTGGAACATTGG
CAGTGTGGAGTGGCGGTGAGTAGAGGAAAATCCGGCAATAACCTTCAAAG
ACCATGGCCTGCACACAGTGCTCCTTTTCTCGCCCACGGCCCCCTCCCTC
GCCATCCGCGGTCTCACGAAAGCTGACATTCCAACCCTGGTCAAGCTCCT
CGTCACTAAGGAGAACTACTCAGCCGCCCTTCCTTCAGCCCTTCCTTCGC
AGGTCATTATCCAACCTCTACCCGGCAAGGATCTATTTGTTTGCGCGCAT
GCCTCGCGGGACATTCGGTGCAAGACCTGTGGGCCACGGCTGGTGGGGTG
GTTGAAAGAAGAGGCTATCAAAGCGGCGAAATCGGGGTCTGGAGAAGACG
AAGTAAGGATCTGGCCATCGTCGCATGTGGGAGGACACATGCACGCGGGA
AATGTCTTGGTTTTCCCCAGCGGGGATTGGTATGGCCAGGTGAATGACCC
TGCAAAGGCCCAGTTGGTGCTGGAGAAGAAGGGCGTGGAGGACGACCTGA
AAAAGTTGTGGCGGGGGTCTTCGTCTTGGATCCCGTGCGTGGCCACGAGC
TCTGGCCGACGCACGTGGAAGAGTCGTCTTTCTTGCTGATCGCCGACTAC
AAGAAAGCACAAAAAGCGCTCACGGCGGCGGCCGGCGCCGCGGGGACGGT
TGGGAAAATGTTCACGCTTAAATTCACCGTCGCCGAGGCCTTGGGCCATG
CGTTGGCCGCCCCCAGTGATGATGAGACGAACACTCCTTCTTCGTCCGTC
GTCCCTTGCCACTGCCGCCTTTACAACTACCACCACTACCACCACCACCA
ACCCCACGATAAGGCGGCGTCGTCTCCTTCGCCGTCGGGCCGTCAACCCC
GAAGCAACCATGGCTGGTACTGTCAAGTTGTATGATCGACAT

Synonyms

Publications