jgi.p|Nanoce1779_2|611477, mRNA_10601 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|611477
Unique Name	mRNA_10601
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1594
Alignment location	scaffold_56:89609..91691 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	611563
Track	FilteredModels2
ProteinId	611477

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_56	supercontig	scaffold_56:89609..91691 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611477	gene_10601	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611477	mRNA_10601-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10601	CDS_10601	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_56:89609..91691-
coding sequence from alignment at scaffold_56:89609..91691-

mRNA sequence

>mRNA_10601 ID=mRNA_10601|Name=jgi.p|Nanoce1779_2|611477|organism=Nannochloropsis oceanica|type=mRNA|length=1594bp
ACAGAAATACGTCAGTTTGATCAATATAAAAGCTATTCCTGCCCCGGCTA
GAGGCTACCGCCCCTCCGCCTTTACTTGTATCGATCTGAACGCACTTCGA
CTCGACACCACGGGAGGTTGCCCTTGCCCTAGCACTATTTATTACCATGG
CCTGCACCAGCGACGACAACGAGAATGCGATTACTTTGGCCCTGCGCGCG
GCGTTTTACGCCAGCTTGGGGAGCAACGAGGAGGAAATGGACGTGAATAT
CGTGGACTACCTAATCAGTGTCCTCGTCGACACGGACGTGGAAGAAGAAG
ACGCATGGGGGGTCCTACAAGGATACCTTCCTGACAATAGGGAAGTAGGA
GAAGAGGCTGTTGAGGCATTACGACAGACCCTCAAGGACACTTCGATTGC
CAAGGAGATGGAGGAGGAAGCAGCGGCGGTGCGGAGGAGGGAGGCGGCAC
GAGCGGCAGCTCTAGCGGCGGCGAGCAGCAGTGACGATGGTGTGCGGACA
GGAGTGGAGGAAGAGGAGGAATGGAAGAAGGAAGAGGACGAGGAAGAGGA
GGAGGTGTTGACGGAGGCCCAGCTGCTGGACCTGGATTTCCTTCACGACT
TATTGGGCGAAGGGGGGGTCGAGGAAGAAGATGAGAGAAGCGGAAACATA
GCTGCAGCAACGACGGGGAAAACCAGCTCTTTGCCCTCTTCTTCTGTGCC
ATCCTCCTTATCTCCCTCTTCGAATTCCGTGGTAGCCTTCCCGAGGGACG
TGATAAAGTACGTGTACCAGGTGAAGTGCGGCAACACCAGGCAACGCGCG
GCGGAGGTCCTCGTCACGTCGGCATCGGAGGAGGGCATTGCATCCCTGAG
GAAGGAGCAGGAACGTTACATCGAGTCCCGCGCCCTTGCCCGCGCCAATC
GCCTCCGTGACGCCTTGCGTCTAAAGCAACAAATCGTGGACCGATTCGCA
GATCAAGTGACCTTCCACGACGGTAATCCCTCAACGACCTCTTACTCCTC
CTCCTTCTCCTCCTCCTCCTCCTCCTCCTCGTCTTCCTCCTCGTCGGCGA
AGCGCAGTAAGCTCCGGTTCCGAGATGGGGTGGTAGTGGCATCTAAAGGA
GAGAAGTATTTGATCGAGAAAATCACGCCCGATTGGGACGGAGGGAGCCG
GGGGAAGATCAAGACGAAGGGAAAGAGGGGGCCAGGATTTGTGTAGTGGA
GGAAGAGGAGTAGGAAATTTAGTATGGAAGCGAGAGATGGTGGAAAGGGA
AGATTTCTACTTGTTTGAAAGCGATCGGCTTTGAAGCCGCCGTCCCTGTC
CAGATGTGTCAAAGGGGGCAAGCAATGCGAAAGAAGCACCGTGGCTTCCC
TCTGGCGAATGGCTCGACGTAGAATTTGCGTCCGTACGCCCATGTGCGCG
TGAAGACAAAAGACAAAACAGATCATGTTCCCCTTCCATAGACGATAGAG
AATGGGTGACAAAATGTACAATAAATAGAGAATATGTACTGCAAATATCG
ACGCTTCCCACAAAATTTCTATGCTCATGACGTACGCCTGTCCTTGCAGC
CCCACGACCCAAGGTGCAAGAAACTCTTCAACGAAATAAAACAG

protein sequence of jgi.p|Nanoce1779_2|611477

>mRNA_10601-protein ID=mRNA_10601-protein|Name=jgi.p|Nanoce1779_2|611477|organism=Nannochloropsis oceanica|type=polypeptide|length=350bp
MACTSDDNENAITLALRAAFYASLGSNEEEMDVNIVDYLISVLVDTDVEE
EDAWGVLQGYLPDNREVGEEAVEALRQTLKDTSIAKEMEEEAAAVRRREA
ARAAALAAASSSDDGVRTGVEEEEEWKKEEDEEEEEVLTEAQLLDLDFLH
DLLGEGGVEEEDERSGNIAAATTGKTSSLPSSSVPSSLSPSSNSVVAFPR
DVIKYVYQVKCGNTRQRAAEVLVTSASEEGIASLRKEQERYIESRALARA
NRLRDALRLKQQIVDRFADQVTFHDGNPSTTSYSSSFSSSSSSSSSSSSS
AKRSKLRFRDGVVVASKGEKYLIEKITPDWDGGSRGKIKTKGKRGPGFV*

mRNA from alignment at scaffold_56:89609..91691-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10601 ID=mRNA_10601|Name=jgi.p|Nanoce1779_2|611477|organism=Nannochloropsis oceanica|type=mRNA|length=2083bp|location=Sequence derived from alignment at scaffold_56:89609..91691- (Nannochloropsis oceanica)
ACAGAAATACGTCAGTTTGATCAATATAAAAGCTATTCCTGCCCCGGCTA
GAGGCTACCGCCCCTCCGCCTTTACTTGTATCGATCTGAACGCACTTCGA
CTCGACACCACGGGAGGTTGCCCTTGCCCTAGCACTATTTATTACCATGG
CCTGCACCAGCGACGACAACGAGAATGCGATTACTTTGGCCCTGCGCGCG
GCGTTTTACGCCAGCTTGGGGAGCAACGAGGAGGAAATGGACGTGAATAT
CGTGGTACGTCTCTCTTCAAACTACCCCTTCCCTCCCTTCCCCTTCCCAC
TATCCTCGCCACCCTCCCGACCCCCGCATGCCATTGCTCTCCTCTCGCCA
CACTTACCACTCAAACAGACCCAAATGCTTATCTTCTTAGCTAAATCTCC
TCTTTATCTCTCCTTTTACCCAATAGGACTACCTAATCAGTGTCCTCGTC
GACACGGACGTGGAAGAAGAAGACGCATGGGGGGTCCTACAAGGATACCT
TCCTGACAATAGGGAAGTAGGAGAAGAGGCTGTTGAGGCATTACGACAGA
CCCTCAAGGACACTTCGATTGCCAAGGAGATGGAGGAGGAAGCAGCGGCG
GTGCGGAGGAGGGAGGCGGCACGAGCGGCAGCTCTAGCGGCGGCGAGCAG
CAGTGACGATGGTGTGCGGACAGGAGTGGAGGAAGAGGAGGAATGGAAGA
AGGAAGAGGACGAGGAAGAGGAGGAGGTGTTGACGGAGGCCCAGCTGCTG
GACCTGGATTTCCTTCACGACTTATTGGGCGAAGGGGGGGTCGAGGAAGA
AGATGAGAGAAGCGGAAACATAGCTGCAGCAACGACGGGGAAAACCAGCT
CTTTGCCCTCTTCTTCTGTGCCATCCTCCTTATCTCCCTCTTCGAATTCC
GTGGTAGCCTTCCCGAGGGACGTGATAAAGTACGTGTACCAGGTGAAGTG
CGGCAACACCAGGCAACGCGCGGCGGAGGTCCTCGTCACGTCGGCATCGG
AGGAGGGCATTGCATCCCTGAGGAAGGAGCAGGTGAGTTGAAGAGGGAAA
GAAGGGGGGAAGAGGTTGGAAGGAGGAAAGTTTCCCCTGTGGGAGTGGCA
GATAGATGAAAGGTGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAAGGAGGGAGGGTCGTCGCGATTCCGGGTAGT
ATTGGACGGCTTGTGGGAGACTTCTCCGCCACCACAACAGGCTTCTTCCT
GTCTCTTTCTCTCCCAGTCATCCTTAAACTTCCCTCCCCCTCCCCTCCCC
CCATTCCTCGAATAGGAACGTTACATCGAGTCCCGCGCCCTTGCCCGCGC
CAATCGCCTCCGTGACGCCTTGCGTCTAAAGCAACAAATCGTGGACCGAT
TCGCAGATCAAGTGACCTTCCACGACGGTAATCCCTCAACGACCTCTTAC
TCCTCCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCGTCTTCCTCCTCGTC
GGCGAAGCGCGTACCGATCTCTATCCCTGCCCCCCCCGGCGGAGAGTAAG
CTCCGGTTCCGAGATGGGGTGGTAGTGGCATCTAAAGGAGAGAAGTATTT
GATCGAGAAAATCACGCCCGATTGGGACGGAGGGAGCCGGGGGAAGATCA
AGACGAAGGGAAAGAGGGGGCCAGGATTTGTGTAGTGGAGGAAGAGGAGT
AGGAAATTTAGTATGGAAGCGAGAGATGGTGGAAAGGGAAGATTTCTACT
TGTTTGAAAGCGATCGGCTTTGAAGCCGCCGTCCCTGTCCAGATGTGTCA
AAGGGGGCAAGCAATGCGAAAGAAGCACCGTGGCTTCCCTCTGGCGAATG
GCTCGACGTAGAATTTGCGTCCGTACGCCCATGTGCGCGTGAAGACAAAA
GACAAAACAGATCATGTTCCCCTTCCATAGACGATAGAGAATGGGTGACA
AAATGTACAATAAATAGAGAATATGTACTGCAAATATCGACGCTTCCCAC
AAAATTTCTATGCTCATGACGTACGCCTGTCCTTGCAGCCCCACGACCCA
AGGTGCAAGAAACTCTTCAACGAAATAAAACAG

Coding sequence (CDS) from alignment at scaffold_56:89609..91691-

>mRNA_10601 ID=mRNA_10601|Name=jgi.p|Nanoce1779_2|611477|organism=Nannochloropsis oceanica|type=CDS|length=4200bp|location=Sequence derived from alignment at scaffold_56:89609..91691- (Nannochloropsis oceanica)
AGTAAGCTCCGGTTCCGAGATGGGGTGGTAGTGGCATCTAAAGGAGAGAA
GTATTTGATCGAGAAAATCACGCCCGATTGGGACGGAGGGAGCCGGGGGA
AGATCAAGACGAAGGGAAAGAGGGGGCCAGGATTTGTGTAGGAACGTTAC
ATCGAGTCCCGCGCCCTTGCCCGCGCCAATCGCCTCCGTGACGCCTTGCG
TCTAAAGCAACAAATCGTGGACCGATTCGCAGATCAAGTGACCTTCCACG
ACGGTAATCCCTCAACGACCTCTTACTCCTCCTCCTTCTCCTCCTCCTCC
TCCTCCTCCTCGTCTTCCTCCTCGTCGGCGAAGCGCGACTACCTAATCAG
TGTCCTCGTCGACACGGACGTGGAAGAAGAAGACGCATGGGGGGTCCTAC
AAGGATACCTTCCTGACAATAGGGAAGTAGGAGAAGAGGCTGTTGAGGCA
TTACGACAGACCCTCAAGGACACTTCGATTGCCAAGGAGATGGAGGAGGA
AGCAGCGGCGGTGCGGAGGAGGGAGGCGGCACGAGCGGCAGCTCTAGCGG
CGGCGAGCAGCAGTGACGATGGTGTGCGGACAGGAGTGGAGGAAGAGGAG
GAATGGAAGAAGGAAGAGGACGAGGAAGAGGAGGAGGTGTTGACGGAGGC
CCAGCTGCTGGACCTGGATTTCCTTCACGACTTATTGGGCGAAGGGGGGG
TCGAGGAAGAAGATGAGAGAAGCGGAAACATAGCTGCAGCAACGACGGGG
AAAACCAGCTCTTTGCCCTCTTCTTCTGTGCCATCCTCCTTATCTCCCTC
TTCGAATTCCGTGGTAGCCTTCCCGAGGGACGTGATAAAGTACGTGTACC
AGGTGAAGTGCGGCAACACCAGGCAACGCGCGGCGGAGGTCCTCGTCACG
TCGGCATCGGAGGAGGGCATTGCATCCCTGAGGAAGGAGCAGATGGCCTG
CACCAGCGACGACAACGAGAATGCGATTACTTTGGCCCTGCGCGCGGCGT
TTTACGCCAGCTTGGGGAGCAACGAGGAGGAAATGGACGTGAATATCGTG
AGTAAGCTCCGGTTCCGAGATGGGGTGGTAGTGGCATCTAAAGGAGAGAA
GTATTTGATCGAGAAAATCACGCCCGATTGGGACGGAGGGAGCCGGGGGA
AGATCAAGACGAAGGGAAAGAGGGGGCCAGGATTTGTGTAGGAACGTTAC
ATCGAGTCCCGCGCCCTTGCCCGCGCCAATCGCCTCCGTGACGCCTTGCG
TCTAAAGCAACAAATCGTGGACCGATTCGCAGATCAAGTGACCTTCCACG
ACGGTAATCCCTCAACGACCTCTTACTCCTCCTCCTTCTCCTCCTCCTCC
TCCTCCTCCTCGTCTTCCTCCTCGTCGGCGAAGCGCGACTACCTAATCAG
TGTCCTCGTCGACACGGACGTGGAAGAAGAAGACGCATGGGGGGTCCTAC
AAGGATACCTTCCTGACAATAGGGAAGTAGGAGAAGAGGCTGTTGAGGCA
TTACGACAGACCCTCAAGGACACTTCGATTGCCAAGGAGATGGAGGAGGA
AGCAGCGGCGGTGCGGAGGAGGGAGGCGGCACGAGCGGCAGCTCTAGCGG
CGGCGAGCAGCAGTGACGATGGTGTGCGGACAGGAGTGGAGGAAGAGGAG
GAATGGAAGAAGGAAGAGGACGAGGAAGAGGAGGAGGTGTTGACGGAGGC
CCAGCTGCTGGACCTGGATTTCCTTCACGACTTATTGGGCGAAGGGGGGG
TCGAGGAAGAAGATGAGAGAAGCGGAAACATAGCTGCAGCAACGACGGGG
AAAACCAGCTCTTTGCCCTCTTCTTCTGTGCCATCCTCCTTATCTCCCTC
TTCGAATTCCGTGGTAGCCTTCCCGAGGGACGTGATAAAGTACGTGTACC
AGGTGAAGTGCGGCAACACCAGGCAACGCGCGGCGGAGGTCCTCGTCACG
TCGGCATCGGAGGAGGGCATTGCATCCCTGAGGAAGGAGCAGATGGCCTG
CACCAGCGACGACAACGAGAATGCGATTACTTTGGCCCTGCGCGCGGCGT
TTTACGCCAGCTTGGGGAGCAACGAGGAGGAAATGGACGTGAATATCGTG
AGTAAGCTCCGGTTCCGAGATGGGGTGGTAGTGGCATCTAAAGGAGAGAA
GTATTTGATCGAGAAAATCACGCCCGATTGGGACGGAGGGAGCCGGGGGA
AGATCAAGACGAAGGGAAAGAGGGGGCCAGGATTTGTGTAGGAACGTTAC
ATCGAGTCCCGCGCCCTTGCCCGCGCCAATCGCCTCCGTGACGCCTTGCG
TCTAAAGCAACAAATCGTGGACCGATTCGCAGATCAAGTGACCTTCCACG
ACGGTAATCCCTCAACGACCTCTTACTCCTCCTCCTTCTCCTCCTCCTCC
TCCTCCTCCTCGTCTTCCTCCTCGTCGGCGAAGCGCGACTACCTAATCAG
TGTCCTCGTCGACACGGACGTGGAAGAAGAAGACGCATGGGGGGTCCTAC
AAGGATACCTTCCTGACAATAGGGAAGTAGGAGAAGAGGCTGTTGAGGCA
TTACGACAGACCCTCAAGGACACTTCGATTGCCAAGGAGATGGAGGAGGA
AGCAGCGGCGGTGCGGAGGAGGGAGGCGGCACGAGCGGCAGCTCTAGCGG
CGGCGAGCAGCAGTGACGATGGTGTGCGGACAGGAGTGGAGGAAGAGGAG
GAATGGAAGAAGGAAGAGGACGAGGAAGAGGAGGAGGTGTTGACGGAGGC
CCAGCTGCTGGACCTGGATTTCCTTCACGACTTATTGGGCGAAGGGGGGG
TCGAGGAAGAAGATGAGAGAAGCGGAAACATAGCTGCAGCAACGACGGGG
AAAACCAGCTCTTTGCCCTCTTCTTCTGTGCCATCCTCCTTATCTCCCTC
TTCGAATTCCGTGGTAGCCTTCCCGAGGGACGTGATAAAGTACGTGTACC
AGGTGAAGTGCGGCAACACCAGGCAACGCGCGGCGGAGGTCCTCGTCACG
TCGGCATCGGAGGAGGGCATTGCATCCCTGAGGAAGGAGCAGATGGCCTG
CACCAGCGACGACAACGAGAATGCGATTACTTTGGCCCTGCGCGCGGCGT
TTTACGCCAGCTTGGGGAGCAACGAGGAGGAAATGGACGTGAATATCGTG
AGTAAGCTCCGGTTCCGAGATGGGGTGGTAGTGGCATCTAAAGGAGAGAA
GTATTTGATCGAGAAAATCACGCCCGATTGGGACGGAGGGAGCCGGGGGA
AGATCAAGACGAAGGGAAAGAGGGGGCCAGGATTTGTGTAGGAACGTTAC
ATCGAGTCCCGCGCCCTTGCCCGCGCCAATCGCCTCCGTGACGCCTTGCG
TCTAAAGCAACAAATCGTGGACCGATTCGCAGATCAAGTGACCTTCCACG
ACGGTAATCCCTCAACGACCTCTTACTCCTCCTCCTTCTCCTCCTCCTCC
TCCTCCTCCTCGTCTTCCTCCTCGTCGGCGAAGCGCGACTACCTAATCAG
TGTCCTCGTCGACACGGACGTGGAAGAAGAAGACGCATGGGGGGTCCTAC
AAGGATACCTTCCTGACAATAGGGAAGTAGGAGAAGAGGCTGTTGAGGCA
TTACGACAGACCCTCAAGGACACTTCGATTGCCAAGGAGATGGAGGAGGA
AGCAGCGGCGGTGCGGAGGAGGGAGGCGGCACGAGCGGCAGCTCTAGCGG
CGGCGAGCAGCAGTGACGATGGTGTGCGGACAGGAGTGGAGGAAGAGGAG
GAATGGAAGAAGGAAGAGGACGAGGAAGAGGAGGAGGTGTTGACGGAGGC
CCAGCTGCTGGACCTGGATTTCCTTCACGACTTATTGGGCGAAGGGGGGG
TCGAGGAAGAAGATGAGAGAAGCGGAAACATAGCTGCAGCAACGACGGGG
AAAACCAGCTCTTTGCCCTCTTCTTCTGTGCCATCCTCCTTATCTCCCTC
TTCGAATTCCGTGGTAGCCTTCCCGAGGGACGTGATAAAGTACGTGTACC
AGGTGAAGTGCGGCAACACCAGGCAACGCGCGGCGGAGGTCCTCGTCACG
TCGGCATCGGAGGAGGGCATTGCATCCCTGAGGAAGGAGCAGATGGCCTG
CACCAGCGACGACAACGAGAATGCGATTACTTTGGCCCTGCGCGCGGCGT
TTTACGCCAGCTTGGGGAGCAACGAGGAGGAAATGGACGTGAATATCGTG

Synonyms

Publications