jgi.p|Nanoce1779_2|352830, mRNA_10600 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|352830
Unique NamemRNA_10600
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1013
Alignment locationscaffold_56:85922..86934 -

Link to JBrowse

Properties
Property NameValue
TranscriptId352916
TrackFilteredModels2
ProteinId352830
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:85922..86934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|352830gene_10600Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|352830mRNA_10600-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10600CDS_10600Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10600 ID=mRNA_10600|Name=jgi.p|Nanoce1779_2|352830|organism=Nannochloropsis oceanica|type=mRNA|length=1013bp
TGGAGGTGAAGGGCTTTCGCGGGAGGGAAGTGGTAGGGTCGCTACAGGTG
TACCTTGGGATGAAGAGGTGGGTGGCCCTGGCCGAGAAATGGAGAAGGAC
GGCCAGACAGCTCTTGGAAGGGGAGGGAGGGGGGAAGGTCGGGAATGTCA
TCCCACCGACGGCGGGTGAATTGGAAAGCTTGTATCATCTGGGAACTGTA
CTGGCTCCGGGTTCGGAGGCAGCAGTCGGTGAAACCTTGGCTGTATTGCA
CGAGAAATACGGGTTGAAGCCTACCCCTGCCTTCCCTCCTTCCCTCCTTC
CCTCTGTTGGTGGGCCCTTGGCTTTGGTTTCGACGGTGGCGGCGGAGCTG
GCGGCGAAGAAGGAAGGGAGGGAGGGCGGGAAGGAGGGATGGTCTCGGTC
AGCGACGCCGATTAGTTTTGAGGCTGATAGTGAGGGAGAGGAGGAGGGAA
GGAAGGAGGAAGGGGAGGGCGGGATAAAAGTGGAAGGTGAGAAGGAGGAG
GACAGAGAGGAGGAGGAGGACAGAGAGGAGGAGGAGGACAGAGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGA
GAGTGGGGAGGAAGAAAAAGACAAGACAGGGCAGGGGAAGGCCAAGAATA
AATCCCCCAAGAATCCTCTCGTCGTCGGCCGTGAGGGGGGGAGGGAGGGG
GAGGGGGGAGGGGGAGGAAGAGAGGGAGGCTGAGCATGAATGTTTCTTCC
TCCTCCTCTGTCCCCTCCTCACCAGTGCTTGGTGTCGGTGCTGGAGACCG
CATGCATGTCGATGAGGCTCCCGTGGCACGTCAGTCCAAGCGAGCTGGAG
TAGCAATAACAGCAGCAGCTAGAGGTAGGAGAGAAAGGGGGGGCAGGGCA
GTCAAGAGGTTGAAGCGGGAAGCAAAGAAAGAGGCGGCGGCAGCGGCCGA
AGCACTAGAAAAAGATGCAGGAGAAAGAGGAGGAGGAGGAAGTGGAGGAG
GAGGAGGAAATGG
back to top

protein sequence of jgi.p|Nanoce1779_2|352830

>mRNA_10600-protein ID=mRNA_10600-protein|Name=jgi.p|Nanoce1779_2|352830|organism=Nannochloropsis oceanica|type=polypeptide|length=252bp
MKRWVALAEKWRRTARQLLEGEGGGKVGNVIPPTAGELESLYHLGTVLAP
GSEAAVGETLAVLHEKYGLKPTPAFPPSLLPSVGGPLALVSTVAAELAAK
KEGREGGKEGWSRSATPISFEADSEGEEEGRKEEGEGGIKVEGEKEEDRE
EEEDREEEEDREEEEEEEEEEEEEEEEEEERVGRKKKTRQGRGRPRINPP
RILSSSAVRGGGRGRGEGEEEREAEHECFFLLLCPLLTSAWCRCWRPHAC
R*
back to top

mRNA from alignment at scaffold_56:85922..86934-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10600 ID=mRNA_10600|Name=jgi.p|Nanoce1779_2|352830|organism=Nannochloropsis oceanica|type=mRNA|length=1013bp|location=Sequence derived from alignment at scaffold_56:85922..86934- (Nannochloropsis oceanica)
TGGAGGTGAAGGGCTTTCGCGGGAGGGAAGTGGTAGGGTCGCTACAGGTG
TACCTTGGGATGAAGAGGTGGGTGGCCCTGGCCGAGAAATGGAGAAGGAC
GGCCAGACAGCTCTTGGAAGGGGAGGGAGGGGGGAAGGTCGGGAATGTCA
TCCCACCGACGGCGGGTGAATTGGAAAGCTTGTATCATCTGGGAACTGTA
CTGGCTCCGGGTTCGGAGGCAGCAGTCGGTGAAACCTTGGCTGTATTGCA
CGAGAAATACGGGTTGAAGCCTACCCCTGCCTTCCCTCCTTCCCTCCTTC
CCTCTGTTGGTGGGCCCTTGGCTTTGGTTTCGACGGTGGCGGCGGAGCTG
GCGGCGAAGAAGGAAGGGAGGGAGGGCGGGAAGGAGGGATGGTCTCGGTC
AGCGACGCCGATTAGTTTTGAGGCTGATAGTGAGGGAGAGGAGGAGGGAA
GGAAGGAGGAAGGGGAGGGCGGGATAAAAGTGGAAGGTGAGAAGGAGGAG
GACAGAGAGGAGGAGGAGGACAGAGAGGAGGAGGAGGACAGAGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGA
GAGTGGGGAGGAAGAAAAAGACAAGACAGGGCAGGGGAAGGCCAAGAATA
AATCCCCCAAGAATCCTCTCGTCGTCGGCCGTGAGGGGGGGAGGGAGGGG
GAGGGGGGAGGGGGAGGAAGAGAGGGAGGCTGAGCATGAATGTTTCTTCC
TCCTCCTCTGTCCCCTCCTCACCAGTGCTTGGTGTCGGTGCTGGAGACCG
CATGCATGTCGATGAGGCTCCCGTGGCACGTCAGTCCAAGCGAGCTGGAG
TAGCAATAACAGCAGCAGCTAGAGGTAGGAGAGAAAGGGGGGGCAGGGCA
GTCAAGAGGTTGAAGCGGGAAGCAAAGAAAGAGGCGGCGGCAGCGGCCGA
AGCACTAGAAAAAGATGCAGGAGAAAGAGGAGGAGGAGGAAGTGGAGGAG
GAGGAGGAAATGG
back to top

Coding sequence (CDS) from alignment at scaffold_56:85922..86934-

>mRNA_10600 ID=mRNA_10600|Name=jgi.p|Nanoce1779_2|352830|organism=Nannochloropsis oceanica|type=CDS|length=756bp|location=Sequence derived from alignment at scaffold_56:85922..86934- (Nannochloropsis oceanica)
ATGAAGAGGTGGGTGGCCCTGGCCGAGAAATGGAGAAGGACGGCCAGACA
GCTCTTGGAAGGGGAGGGAGGGGGGAAGGTCGGGAATGTCATCCCACCGA
CGGCGGGTGAATTGGAAAGCTTGTATCATCTGGGAACTGTACTGGCTCCG
GGTTCGGAGGCAGCAGTCGGTGAAACCTTGGCTGTATTGCACGAGAAATA
CGGGTTGAAGCCTACCCCTGCCTTCCCTCCTTCCCTCCTTCCCTCTGTTG
GTGGGCCCTTGGCTTTGGTTTCGACGGTGGCGGCGGAGCTGGCGGCGAAG
AAGGAAGGGAGGGAGGGCGGGAAGGAGGGATGGTCTCGGTCAGCGACGCC
GATTAGTTTTGAGGCTGATAGTGAGGGAGAGGAGGAGGGAAGGAAGGAGG
AAGGGGAGGGCGGGATAAAAGTGGAAGGTGAGAAGGAGGAGGACAGAGAG
GAGGAGGAGGACAGAGAGGAGGAGGAGGACAGAGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGAGTGGGGA
GGAAGAAAAAGACAAGACAGGGCAGGGGAAGGCCAAGAATAAATCCCCCA
AGAATCCTCTCGTCGTCGGCCGTGAGGGGGGGAGGGAGGGGGAGGGGGGA
GGGGGAGGAAGAGAGGGAGGCTGAGCATGAATGTTTCTTCCTCCTCCTCT
GTCCCCTCCTCACCAGTGCTTGGTGTCGGTGCTGGAGACCGCATGCATGT
CGATGA
back to top
Synonyms
Publications