jgi.p|Nanoce1779_2|611473, mRNA_10599 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611473
Unique NamemRNA_10599
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length709
Alignment locationscaffold_56:85052..85760 -

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Properties
Property NameValue
TranscriptId611559
TrackFilteredModels2
ProteinId611473
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:85052..85760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611473gene_10599Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611473mRNA_10599-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10599CDS_10599Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10599 ID=mRNA_10599|Name=jgi.p|Nanoce1779_2|611473|organism=Nannochloropsis oceanica|type=mRNA|length=709bp
CCCCCCCCCCTCCCCCGAGCCCTCCTTAGGGGAGGAAATGGAGGGAGAGG
TGGACTATGACAGTGAGGAAGAAGAGAAGCAGGACAAGGAGGAGAATGAT
GAGAAGGAGGATAATAAAGAGTCATTACCAGTACCCTCAGCGGAGGGAAA
ACAGGAAGGGTCGTCGGGAGGCCCTGCCCCCTCCTCTCCCTTCTTCTCCC
CCTCCTCCTCTTCCCGCCTTCCACCGTCACCCCGTACCTCCACGTCCTGT
TCCTCCTTCTCGCCCTCCCGCCCGAGACCTCTTGCGGCTGCCAACTGCTC
TCCATCCCCTCCTCACCACACCTCCGTCGCTATCATTCCATCTGCTGCGG
CTGCTGCGGTTGCTGCTAGTAGCACAGCCACAAGCCCAAAATCTACCTGC
ATTGCCCCTCCGTCCATTTCGGACCTTCCCCCCAAATCATCCACCTGCAT
TGCCCTCGGCTGCCATTCTTCCCTCCCTCCCTCCTCCCCTCCCTCCTCCT
CGCCATCGCCCTACTGCAGCCAGCTCTGCTTGGTGAAGGAAGCACGCCCC
CTCCTTTGGGCTCTGGGGGAGGTTAAGGAGCACCTTGCCATGGACTGGCT
CGCACGGGCGATTTGTGCGGTGGAGGGAAAGGGGGAGGAAGGGAAGGACG
CAGGGAGGGAAGCTAGGAGTGCGGTGCTGCAGAATATTCTGACGTTTGTC
GGGGAGGAG
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protein sequence of jgi.p|Nanoce1779_2|611473

>mRNA_10599-protein ID=mRNA_10599-protein|Name=jgi.p|Nanoce1779_2|611473|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MTVRKKRSRTRRRMMRRRIIKSHYQYPQRRENRKGRREALPPPLPSSPPP
PLPAFHRHPVPPRPVPPSRPPARDLLRLPTALHPLLTTPPSLSFHLLRLL
RLLLVAQPQAQNLPALPLRPFRTFPPNHPPALPSAAILPSLPPPLPPPRH
RPTAASSAW*
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mRNA from alignment at scaffold_56:85052..85760-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10599 ID=mRNA_10599|Name=jgi.p|Nanoce1779_2|611473|organism=Nannochloropsis oceanica|type=mRNA|length=709bp|location=Sequence derived from alignment at scaffold_56:85052..85760- (Nannochloropsis oceanica)
CCCCCCCCCCTCCCCCGAGCCCTCCTTAGGGGAGGAAATGGAGGGAGAGG
TGGACTATGACAGTGAGGAAGAAGAGAAGCAGGACAAGGAGGAGAATGAT
GAGAAGGAGGATAATAAAGAGTCATTACCAGTACCCTCAGCGGAGGGAAA
ACAGGAAGGGTCGTCGGGAGGCCCTGCCCCCTCCTCTCCCTTCTTCTCCC
CCTCCTCCTCTTCCCGCCTTCCACCGTCACCCCGTACCTCCACGTCCTGT
TCCTCCTTCTCGCCCTCCCGCCCGAGACCTCTTGCGGCTGCCAACTGCTC
TCCATCCCCTCCTCACCACACCTCCGTCGCTATCATTCCATCTGCTGCGG
CTGCTGCGGTTGCTGCTAGTAGCACAGCCACAAGCCCAAAATCTACCTGC
ATTGCCCCTCCGTCCATTTCGGACCTTCCCCCCAAATCATCCACCTGCAT
TGCCCTCGGCTGCCATTCTTCCCTCCCTCCCTCCTCCCCTCCCTCCTCCT
CGCCATCGCCCTACTGCAGCCAGCTCTGCTTGGTGAAGGAAGCACGCCCC
CTCCTTTGGGCTCTGGGGGAGGTTAAGGAGCACCTTGCCATGGACTGGCT
CGCACGGGCGATTTGTGCGGTGGAGGGAAAGGGGGAGGAAGGGAAGGACG
CAGGGAGGGAAGCTAGGAGTGCGGTGCTGCAGAATATTCTGACGTTTGTC
GGGGAGGAG
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Coding sequence (CDS) from alignment at scaffold_56:85052..85760-

>mRNA_10599 ID=mRNA_10599|Name=jgi.p|Nanoce1779_2|611473|organism=Nannochloropsis oceanica|type=CDS|length=480bp|location=Sequence derived from alignment at scaffold_56:85052..85760- (Nannochloropsis oceanica)
ATGACAGTGAGGAAGAAGAGAAGCAGGACAAGGAGGAGAATGATGAGAAG
GAGGATAATAAAGAGTCATTACCAGTACCCTCAGCGGAGGGAAAACAGGA
AGGGTCGTCGGGAGGCCCTGCCCCCTCCTCTCCCTTCTTCTCCCCCTCCT
CCTCTTCCCGCCTTCCACCGTCACCCCGTACCTCCACGTCCTGTTCCTCC
TTCTCGCCCTCCCGCCCGAGACCTCTTGCGGCTGCCAACTGCTCTCCATC
CCCTCCTCACCACACCTCCGTCGCTATCATTCCATCTGCTGCGGCTGCTG
CGGTTGCTGCTAGTAGCACAGCCACAAGCCCAAAATCTACCTGCATTGCC
CCTCCGTCCATTTCGGACCTTCCCCCCAAATCATCCACCTGCATTGCCCT
CGGCTGCCATTCTTCCCTCCCTCCCTCCTCCCCTCCCTCCTCCTCGCCAT
CGCCCTACTGCAGCCAGCTCTGCTTGGTGA
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Synonyms
Publications