jgi.p|Nanoce1779_2|611471, mRNA_10598 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611471
Unique NamemRNA_10598
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1213
Alignment locationscaffold_56:82401..83613 +

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Properties
Property NameValue
TranscriptId611557
TrackFilteredModels2
ProteinId611471
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:82401..83613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611471gene_10598Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611471mRNA_10598-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10598CDS_10598Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10598 ID=mRNA_10598|Name=jgi.p|Nanoce1779_2|611471|organism=Nannochloropsis oceanica|type=mRNA|length=1213bp
GGATTCGCCGGGTCCCTCAACCTCCTCTGATACTCCCACCAGCCCCCCCC
TCCCTTCTTCCCTCCCTCCTCCTCCTCCTCCTCCTCCTCCTTGCCTTGAT
CATAGACAGGGAGCACTCGGATATGCACGAAGAAGTGTCTCTCGGGGTGT
CGCTGTGCAGTCGACAAGACCTTCCTGAGGAATTGAGTGCCGGCATCCAG
TGACGTCCATCCCCCCACCACCAAGGAGGGCGGGAGGAAGGTCATGAGCC
GGGGGAGGGCAAGAATAGGAGCAGCGAGGCCCACGTCCATCCGTAGGGGA
GAAGGACGGAGGGAAGGACAAGGCTTGTGAAAGGAGAAGGGGGGGTGGTC
GAGGTGCAAATGGTAGACACAGGGGAAAGGGGACCCAGGGGGCGCAGGGG
TGGAGGAAGCGGAAAGGAAGGCCCAGGCTGGAGGGAGGGGGGTGCTAGCG
ATGGCAACCTGCCCACCCTCCCTCCCTCTCTCCCTCCCTTCCTTCCTTCT
GTTGGCCATGGTATGGCTACTGCGAGCGACTGCTGGAGGAAGGGAGGGAG
GACGCTGGGGAGCAGCAGCAGTAGAGACACAGCTGACTGCACCATTAGTG
CAGGAGGGGTGAGGTTCTTTCCCCTCCTCCACCCTTGTGGCTCCCTCCCT
CCTCTTCCCCCCTCCTTCTGCCATGGCCCAGGTCGCCGGCAGACGCTCTT
CTGCTTTATCCCCCTTTCCCTCCTCCTCCTCTTTTCCCTCCTCCTCCTCC
TCCTCCCTCGAGCTGTTGCTTTCCCCACTCTTTGTCTCCCACTGCGGCAT
CTCCAGTCGCAAGGAGGAAGGCAGCATCAGAGCAGTGGGAGGAGCAGGAG
CAGTGGAAGGAGTAGAAGAAGCACCCCGAGAGGGGAGGAGTGTGGGTGGA
ACCACGTGGATGCCATCCTTCCTATCACCCAACGCGGCAGCTGCTGCTTC
AGCTGCCTCCACCAGGAGGAGCGCCGTCCCCGGTGACTCGTTCCCTACCC
CTTGGGGGGGGAATGAGCCGAAGAAAGAAGAGGCAGAGGGGAAGGGGGAT
GCCAACACTTGCTGCCGCTCCTTTTCCTCCTGTTGCTGCTCGGCTTTCCC
CTTCTCTTCTTTCTTCTGTTGCTGCTGCTGCTGCTGCTGCTCTTGTTGTT
GTTGTTGTTGCTGTTGTTGTTGTTGTTGTTGTTGCTGTTGTTGTTGTTGT
TGTTGTTGTTGTT
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protein sequence of jgi.p|Nanoce1779_2|611471

>mRNA_10598-protein ID=mRNA_10598-protein|Name=jgi.p|Nanoce1779_2|611471|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MVDTGERGPRGRRGGGSGKEGPGWREGGASDGNLPTLPPSLPPFLPSVGH
GMATASDCWRKGGRTLGSSSSRDTADCTISAGGVRFFPLLHPCGSLPPLP
PSFCHGPGRRQTLFCFIPLSLLLLFSLLLLLLPRAVAFPTLCLPLRHLQS
QGGRQHQSSGRSRSSGRSRRSTPRGEECGWNHVDAILPITQRGSCCFSCL
HQEERRPR*
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mRNA from alignment at scaffold_56:82401..83613+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10598 ID=mRNA_10598|Name=jgi.p|Nanoce1779_2|611471|organism=Nannochloropsis oceanica|type=mRNA|length=1213bp|location=Sequence derived from alignment at scaffold_56:82401..83613+ (Nannochloropsis oceanica)
GGATTCGCCGGGTCCCTCAACCTCCTCTGATACTCCCACCAGCCCCCCCC
TCCCTTCTTCCCTCCCTCCTCCTCCTCCTCCTCCTCCTCCTTGCCTTGAT
CATAGACAGGGAGCACTCGGATATGCACGAAGAAGTGTCTCTCGGGGTGT
CGCTGTGCAGTCGACAAGACCTTCCTGAGGAATTGAGTGCCGGCATCCAG
TGACGTCCATCCCCCCACCACCAAGGAGGGCGGGAGGAAGGTCATGAGCC
GGGGGAGGGCAAGAATAGGAGCAGCGAGGCCCACGTCCATCCGTAGGGGA
GAAGGACGGAGGGAAGGACAAGGCTTGTGAAAGGAGAAGGGGGGGTGGTC
GAGGTGCAAATGGTAGACACAGGGGAAAGGGGACCCAGGGGGCGCAGGGG
TGGAGGAAGCGGAAAGGAAGGCCCAGGCTGGAGGGAGGGGGGTGCTAGCG
ATGGCAACCTGCCCACCCTCCCTCCCTCTCTCCCTCCCTTCCTTCCTTCT
GTTGGCCATGGTATGGCTACTGCGAGCGACTGCTGGAGGAAGGGAGGGAG
GACGCTGGGGAGCAGCAGCAGTAGAGACACAGCTGACTGCACCATTAGTG
CAGGAGGGGTGAGGTTCTTTCCCCTCCTCCACCCTTGTGGCTCCCTCCCT
CCTCTTCCCCCCTCCTTCTGCCATGGCCCAGGTCGCCGGCAGACGCTCTT
CTGCTTTATCCCCCTTTCCCTCCTCCTCCTCTTTTCCCTCCTCCTCCTCC
TCCTCCCTCGAGCTGTTGCTTTCCCCACTCTTTGTCTCCCACTGCGGCAT
CTCCAGTCGCAAGGAGGAAGGCAGCATCAGAGCAGTGGGAGGAGCAGGAG
CAGTGGAAGGAGTAGAAGAAGCACCCCGAGAGGGGAGGAGTGTGGGTGGA
ACCACGTGGATGCCATCCTTCCTATCACCCAACGCGGCAGCTGCTGCTTC
AGCTGCCTCCACCAGGAGGAGCGCCGTCCCCGGTGACTCGTTCCCTACCC
CTTGGGGGGGGAATGAGCCGAAGAAAGAAGAGGCAGAGGGGAAGGGGGAT
GCCAACACTTGCTGCCGCTCCTTTTCCTCCTGTTGCTGCTCGGCTTTCCC
CTTCTCTTCTTTCTTCTGTTGCTGCTGCTGCTGCTGCTGCTCTTGTTGTT
GTTGTTGTTGCTGTTGTTGTTGTTGTTGTTGTTGCTGTTGTTGTTGTTGT
TGTTGTTGTTGTT
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Coding sequence (CDS) from alignment at scaffold_56:82401..83613+

>mRNA_10598 ID=mRNA_10598|Name=jgi.p|Nanoce1779_2|611471|organism=Nannochloropsis oceanica|type=CDS|length=627bp|location=Sequence derived from alignment at scaffold_56:82401..83613+ (Nannochloropsis oceanica)
ATGGTAGACACAGGGGAAAGGGGACCCAGGGGGCGCAGGGGTGGAGGAAG
CGGAAAGGAAGGCCCAGGCTGGAGGGAGGGGGGTGCTAGCGATGGCAACC
TGCCCACCCTCCCTCCCTCTCTCCCTCCCTTCCTTCCTTCTGTTGGCCAT
GGTATGGCTACTGCGAGCGACTGCTGGAGGAAGGGAGGGAGGACGCTGGG
GAGCAGCAGCAGTAGAGACACAGCTGACTGCACCATTAGTGCAGGAGGGG
TGAGGTTCTTTCCCCTCCTCCACCCTTGTGGCTCCCTCCCTCCTCTTCCC
CCCTCCTTCTGCCATGGCCCAGGTCGCCGGCAGACGCTCTTCTGCTTTAT
CCCCCTTTCCCTCCTCCTCCTCTTTTCCCTCCTCCTCCTCCTCCTCCCTC
GAGCTGTTGCTTTCCCCACTCTTTGTCTCCCACTGCGGCATCTCCAGTCG
CAAGGAGGAAGGCAGCATCAGAGCAGTGGGAGGAGCAGGAGCAGTGGAAG
GAGTAGAAGAAGCACCCCGAGAGGGGAGGAGTGTGGGTGGAACCACGTGG
ATGCCATCCTTCCTATCACCCAACGCGGCAGCTGCTGCTTCAGCTGCCTC
CACCAGGAGGAGCGCCGTCCCCGGTGA
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Synonyms
Publications