jgi.p|Nanoce1779_2|611468, mRNA_10596 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611468
Unique NamemRNA_10596
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1233
Alignment locationscaffold_56:78735..79967 +

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Properties
Property NameValue
TranscriptId611554
TrackFilteredModels2
ProteinId611468
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:78735..79967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611468gene_10596Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611468mRNA_10596-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10596CDS_10596Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10596 ID=mRNA_10596|Name=jgi.p|Nanoce1779_2|611468|organism=Nannochloropsis oceanica|type=mRNA|length=1233bp
AGCTGCATCAGTCTCATTCGCCTCCCGCCCTAATAGGACTTGCAATGGCC
ATCGTCGACGACAACCCCACGGGCCCCACGCCCACCAACCCCAAGAAGGG
CAAAAAGAAGAGCCCGCGTACCTCCGCGGCCCCCGAAAAGATGCCCAAAC
CCTTGTCGTCAGTCGATTCTGCCGTTATGGAGAAGGAGGAGGAAGAGACT
TCTGCCCAGGCCGAAGCGACCATTGCCCCAGAGGAAGAGACTGATACGGA
TGCTGGGCTTCCGTACGTGGCACAAATGGCTGCAGACACTACCTCAATGG
TATTGGCAGAGTCCTATCTGTTGACGCAGCGTGGTTATGAGACGCTCAAA
TCGATTGACGCCCGTGTTGGGGTGTCCTCCCGGTTGCTCGCCTTGGACCA
GAGCGTCGGCGTGAGCAAGAGGGTGGTCTCCACTGCCGAGGCCTTGACTA
CGCGCGCACAGGCCCTGGACACTAAGTACAAGGTCGTCTCTAAGATCAAG
GACACAGCCGAGGCCGTGAGTGAGCGAGCCCTTGAATATAAGTACGTGGA
CTCGGGTGCGAAGCTTGTCGGGAAGTGGGGACGTTCCACTCTTGCCAAGA
CCCGTCAGAAGATCGTCACACGCAGCACCAAGGGAGGGAAGGACGCGAAG
ACGGTTTCGCCTGTACCTTTGACTGGGGAGGAGGATGTCCCCATCGATCT
GTCAAAGAAGTAATTGACTTGAGCCGTGGAAAGGGGACGGCCTGAAGGAG
GGAGAGAGGAAGAGGGGGGTTCATCACTATTCGGTTTGTGTGTATGTGTT
TTTAAGAGCAGCAGCAGTACCAGTACAGCAGGACACGTAGGCATGTAAGC
AGGGAGCAGTCGTCTTTCACAGCCCCCAATTTTGAAAATAATGCCTGTCC
GTGGAAGCAGGGGAGGGAGACGATGAGATAAAGAGGTGGCGAAGGAGTTA
AGGTAAAAGAAGTACCCCGACAATACTAAGAAAGCCGTTCTTAATTTGTT
TGGCGGCTGTAGATTTGATTTTGATTCATGTATGGCGATGGACGCAAAAG
CAAAGCGAAGGAGAAAAAAAGGTGGAGGGGGAAGAGGCATGGTCGTCGGA
CGACTGGGGATGGGTGGGGAAGCAGTCAATATGATAGAAATTGCTTGAAG
AAGGAAACGAATAAATAAGAAGAAGCATAAAAAATAAGAAGAAGGGTAAA
ACGAAAGGAAGGAAAGAAACGTACTTTTGATGA
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protein sequence of jgi.p|Nanoce1779_2|611468

>mRNA_10596-protein ID=mRNA_10596-protein|Name=jgi.p|Nanoce1779_2|611468|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MAIVDDNPTGPTPTNPKKGKKKSPRTSAAPEKMPKPLSSVDSAVMEKEEE
ETSAQAEATIAPEEETDTDAGLPYVAQMAADTTSMVLAESYLLTQRGYET
LKSIDARVGVSSRLLALDQSVGVSKRVVSTAEALTTRAQALDTKYKVVSK
IKDTAEAVSERALEYKYVDSGAKLVGKWGRSTLAKTRQKIVTRSTKGGKD
AKTVSPVPLTGEEDVPIDLSKK*
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mRNA from alignment at scaffold_56:78735..79967+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10596 ID=mRNA_10596|Name=jgi.p|Nanoce1779_2|611468|organism=Nannochloropsis oceanica|type=mRNA|length=1233bp|location=Sequence derived from alignment at scaffold_56:78735..79967+ (Nannochloropsis oceanica)
AGCTGCATCAGTCTCATTCGCCTCCCGCCCTAATAGGACTTGCAATGGCC
ATCGTCGACGACAACCCCACGGGCCCCACGCCCACCAACCCCAAGAAGGG
CAAAAAGAAGAGCCCGCGTACCTCCGCGGCCCCCGAAAAGATGCCCAAAC
CCTTGTCGTCAGTCGATTCTGCCGTTATGGAGAAGGAGGAGGAAGAGACT
TCTGCCCAGGCCGAAGCGACCATTGCCCCAGAGGAAGAGACTGATACGGA
TGCTGGGCTTCCGTACGTGGCACAAATGGCTGCAGACACTACCTCAATGG
TATTGGCAGAGTCCTATCTGTTGACGCAGCGTGGTTATGAGACGCTCAAA
TCGATTGACGCCCGTGTTGGGGTGTCCTCCCGGTTGCTCGCCTTGGACCA
GAGCGTCGGCGTGAGCAAGAGGGTGGTCTCCACTGCCGAGGCCTTGACTA
CGCGCGCACAGGCCCTGGACACTAAGTACAAGGTCGTCTCTAAGATCAAG
GACACAGCCGAGGCCGTGAGTGAGCGAGCCCTTGAATATAAGTACGTGGA
CTCGGGTGCGAAGCTTGTCGGGAAGTGGGGACGTTCCACTCTTGCCAAGA
CCCGTCAGAAGATCGTCACACGCAGCACCAAGGGAGGGAAGGACGCGAAG
ACGGTTTCGCCTGTACCTTTGACTGGGGAGGAGGATGTCCCCATCGATCT
GTCAAAGAAGTAATTGACTTGAGCCGTGGAAAGGGGACGGCCTGAAGGAG
GGAGAGAGGAAGAGGGGGGTTCATCACTATTCGGTTTGTGTGTATGTGTT
TTTAAGAGCAGCAGCAGTACCAGTACAGCAGGACACGTAGGCATGTAAGC
AGGGAGCAGTCGTCTTTCACAGCCCCCAATTTTGAAAATAATGCCTGTCC
GTGGAAGCAGGGGAGGGAGACGATGAGATAAAGAGGTGGCGAAGGAGTTA
AGGTAAAAGAAGTACCCCGACAATACTAAGAAAGCCGTTCTTAATTTGTT
TGGCGGCTGTAGATTTGATTTTGATTCATGTATGGCGATGGACGCAAAAG
CAAAGCGAAGGAGAAAAAAAGGTGGAGGGGGAAGAGGCATGGTCGTCGGA
CGACTGGGGATGGGTGGGGAAGCAGTCAATATGATAGAAATTGCTTGAAG
AAGGAAACGAATAAATAAGAAGAAGCATAAAAAATAAGAAGAAGGGTAAA
ACGAAAGGAAGGAAAGAAACGTACTTTTGATGA
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Coding sequence (CDS) from alignment at scaffold_56:78735..79967+

>mRNA_10596 ID=mRNA_10596|Name=jgi.p|Nanoce1779_2|611468|organism=Nannochloropsis oceanica|type=CDS|length=669bp|location=Sequence derived from alignment at scaffold_56:78735..79967+ (Nannochloropsis oceanica)
ATGGCCATCGTCGACGACAACCCCACGGGCCCCACGCCCACCAACCCCAA
GAAGGGCAAAAAGAAGAGCCCGCGTACCTCCGCGGCCCCCGAAAAGATGC
CCAAACCCTTGTCGTCAGTCGATTCTGCCGTTATGGAGAAGGAGGAGGAA
GAGACTTCTGCCCAGGCCGAAGCGACCATTGCCCCAGAGGAAGAGACTGA
TACGGATGCTGGGCTTCCGTACGTGGCACAAATGGCTGCAGACACTACCT
CAATGGTATTGGCAGAGTCCTATCTGTTGACGCAGCGTGGTTATGAGACG
CTCAAATCGATTGACGCCCGTGTTGGGGTGTCCTCCCGGTTGCTCGCCTT
GGACCAGAGCGTCGGCGTGAGCAAGAGGGTGGTCTCCACTGCCGAGGCCT
TGACTACGCGCGCACAGGCCCTGGACACTAAGTACAAGGTCGTCTCTAAG
ATCAAGGACACAGCCGAGGCCGTGAGTGAGCGAGCCCTTGAATATAAGTA
CGTGGACTCGGGTGCGAAGCTTGTCGGGAAGTGGGGACGTTCCACTCTTG
CCAAGACCCGTCAGAAGATCGTCACACGCAGCACCAAGGGAGGGAAGGAC
GCGAAGACGGTTTCGCCTGTACCTTTGACTGGGGAGGAGGATGTCCCCAT
CGATCTGTCAAAGAAGTAA
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Synonyms
Publications