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Properties
Property Name | Value |
TranscriptId | 561043 |
Track | FilteredModels2 |
ProteinId | 560957 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_56 | supercontig | scaffold_56:76985..79966 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10595 ID=mRNA_10595|Name=jgi.p|Nanoce1779_2|560957|organism=Nannochloropsis oceanica|type=mRNA|length=2820bp CAGATACAAGTAATGAAACATGTGTTGTTGTCTTCACCCCTTTGTGGCCG TCTTTCCTTCCTCTGCCTCATCGTGCCCCTCGTCCTTCTCCCACTCGCCG GGGCCACCGTCTCCACGACCGCGGAGTTCGACGCTTGGATGGCCCAACAC CATAAAATGTATGGCTCTGCGGACGAAAAGGCACAGCGATACCAGCATTG GCTCAAGGCCTATGAACGTGTGCAGCAGCACGCTCACCCGCACTACTCGT TAGGGCTGAATGAGATGAGTGATTGGTCCCCTGCGGAGCATGCGCAACGC TTACCACGCGGCGGTGCCCTCGACCACTTCGGGAGCGAGCGCCGTATTGG CTTTCACATTCCGGCCGGGTGGCGTCGAAAATTTGGCGTCACATCCATTC GCAACCAGCTATTTTGTGGAGGCTGCTATAGCTTCGGTGTGGTGGCAGCT GTGGAAGGGGTGGTTGCCGCCGACCGTGGGTGCTTGAATGCCCTGAGCGA CGAGCAGATTATAGACTGCGATGCGGCAAACAACGGGTGCGAGGGAGGGG ACCCTCAGATTGCCTTAACGTACGTCGTGGACCAACCACTAGTCGCGAAA AGCGATTATCCCTTCAATGCCGGGAAAGGTCATGCAAGCCAGTGTGCGCT GAATGAAGCAGTAGCCCCGGCGTCGCAAGTACAAAGTTATCTGTACGTGC AGCCCTGCGATGAGACAGTGCTGATGCAGGCGGTGGCTAGGGGGCCGGTG GTGGTGGCGATCGATGCCTACTGTGACGCCTTCATGCAATACTCGGGAGG CGTGCTTTCAGATTCATGTGTGGACGATTCTTTGAACCACGCTGTGGCCA TAGTGGGCTACGGGGCTGATGGAAACACGGGGTTGAAATACTGGATTATC AAAAACAGCTGGGGCACGTCGTGGGGAGAAAGGGGATTTGCGCGCGTGTT GCGTGGGGGGGGGACAGAAGGGGAGGAAGGTAAGGATTGTGGTGTAGGGT GTTTGGAGTACTACAACTTCTTGCCCACGGGTGGCGTGGCGTTTGTGAAT GGTACGGCGTTTTCGGACAACGACTTTCCCAAGGGGGATATGGACGAAGA TGCTCAGAGAGAATTATTTTTCATGGACATTCTCGTGGGCATGGCGGTAG TCTTGGCCGTGCTTATGGTGATGAGCGTGCCCAAATTGCGGCGTCAACAA GTTCAGTCTGGCGCAGAGCCCTTACTGCAGTTGGAAGACAAGGAAGAAGA GGATGACGAAAGGGGGGTCACAACTCTTGCAAACTAATGGTAGTCGATGA ATGAATCGAAATTGAAGAAAGAAGCACCCACCACTTGTACAGGAAGACTT GCATTTTTAAATCGGGAAACCATGTGATTATCATGAGCTTCGTCGACAGG CCTTGTCATCGCCCGGAAAGTGGGCACACGGTGTTCCACAAGCAGAGGGC TTTCTCTATGGAAATGCAACAACTGGACCAATCCAGACTTTGACTCGATG TCTGCAGCACTCTCTTTGTGATATCGAAGTACTCGTCGGCGGACGCACCA ATCTTTTTTACTTACTGTTGTTTTCTTCCCGTCCGCTTAGCTGCATCAGT CTCATTCGCCTCCCGCCCTAATAGGACTTGCAATGGCCATCGTCGACGAC AACCCCACGGGCCCCACGCCCACCAACCCCAAGAAGGGCAAAAAGAAGAG CCCGCGTACCTCCGCGGCCCCCGAAAAGATGCCCAAACCCTTGTCGTCAG TCGATTCTGCCGTTATGGAGAAGGAGGAGGAAGAGACTTCTGCCCAGGCC GAAGCGACCATTGCCCCAGAGGAAGAGACTGATACGGATGCTGGGCTTCC GTACGTGGCACAAATGGCTGCAGACACTACCTCAATGGTATTGGCAGAGT CCTATCTGTTGACGCAGCGTGGTTATGAGACGCTCAAATCGATTGACGCC CGTGTTGGGGTGTCCTCCCGGTTGCTCGCCTTGGACCAGAGCGTCGGCGT GAGCAAGAGGGTGGTCTCCACTGCCGAGGCCTTGACTACGCGCGCACAGG CCCTGGACACTAAGTACAAGGTCGTCTCTAAGATCAAGGACACAGCCGAG GCCGTGAGTGAGCGAGCCCTTGAATATAAGTACGTGGACTCGGGTGCGAA GCTTGTCGGGAAGTGGGGACGTTCCACTCTTGCCAAGACCCGTCAGAAGA TCGTCACACGCAGCACCAAGGGAGGGAAGGACGCGAAGACGGTTTCGCCT GTACCTTTGACTGGGGAGGAGGATGTCCCCATCGATCTGTCAAAGAAGTA ATTGACTTGAGCCGTGGAAAGGGGACGGCCTGAAGGAGGGAGAGAGGAAG AGGGGGGTTCATCACTATTCGGTTTGTGTGTATGTGTTTTTAAGAGCAGC AGCAGTACCAGTACAGCAGGACACGTAGGCATGTAAGCAGGGAGCAGTCG TCTTTCACAGCCCCCAATTTTGAAAATAATGCCTGTCCGTGGAAGCAGGG GAGGGAGACGATGAGATAAAGAGGTGGCGAAGGAGTTAAGGTAAAAGAAG TACCCCGACAATACTAAGAAAGCCGTTCTTAATTTGTTTGGCGGCTGTAG ATTTGATTTTGATTCATGTATGGCGATGGACGCAAAAGCAAAGCGAAGGA GAAAAAAAGGTGGAGGGGGAAGAGGCATGGTCGTCGGACGACTGGGGATG GGTGGGGAAGCAGTCAATATGATAGAAATTGCTTGAAGAAGGAAACGAAT AAATAAGAAGAAGCATAAAAAATAAGAAGAAGGGTAAAACGAAAGGAAGG AAAGAAACGTACTTTTGATG back to topprotein sequence of jgi.p|Nanoce1779_2|560957 >mRNA_10595-protein ID=mRNA_10595-protein|Name=jgi.p|Nanoce1779_2|560957|organism=Nannochloropsis oceanica|type=polypeptide|length=425bp MKHVLLSSPLCGRLSFLCLIVPLVLLPLAGATVSTTAEFDAWMAQHHKMY GSADEKAQRYQHWLKAYERVQQHAHPHYSLGLNEMSDWSPAEHAQRLPRG GALDHFGSERRIGFHIPAGWRRKFGVTSIRNQLFCGGCYSFGVVAAVEGV VAADRGCLNALSDEQIIDCDAANNGCEGGDPQIALTYVVDQPLVAKSDYP FNAGKGHASQCALNEAVAPASQVQSYLYVQPCDETVLMQAVARGPVVVAI DAYCDAFMQYSGGVLSDSCVDDSLNHAVAIVGYGADGNTGLKYWIIKNSW GTSWGERGFARVLRGGGTEGEEGKDCGVGCLEYYNFLPTGGVAFVNGTAF SDNDFPKGDMDEDAQRELFFMDILVGMAVVLAVLMVMSVPKLRRQQVQSG AEPLLQLEDKEEEDDERGVTTLAN* back to topmRNA from alignment at scaffold_56:76985..79966+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10595 ID=mRNA_10595|Name=jgi.p|Nanoce1779_2|560957|organism=Nannochloropsis oceanica|type=mRNA|length=2982bp|location=Sequence derived from alignment at scaffold_56:76985..79966+ (Nannochloropsis oceanica) CAGATACAAGTAATGAAACATGTGTTGTTGTCTTCACCCCTTTGTGGCCG
TCTTTCCTTCCTCTGCCTCATCGTGCCCCTCGTCCTTCTCCCACTCGCCG
GGGCCACCGTCTCCACGACCGCGGAGTTCGACGCTTGGATGGCCCAACAC
CATAAAATGTATGGCTCTGCGGACGAAAAGGCACAGCGATACCAGCATTG
GCTCAAGGCCTATGAACGTGTGCAGCAGCACGCTCACCCGCACTACTCGT
TAGGGCTGAATGAGATGAGTGATTGGTCCCCTGCGGAGCATGCGCAACGC
TTACCACGCGGCGGTGCCCTCGACCACTTCGGGAGCGAGCGCCGTATTGG
CTTTCACATTCCGGCCGGGTGGCGTCGAAAATTTGTTGATGAGTTCCGGG
CAAGCCATCCACGTGTCTTCGATGGGCGGGATGAGCCACCACCGCCCCAT
GAAGTAGATTGGCGAGACCCCCGTAAGAACCCTAAGCAAGTCAAGGGCGT
CACATCCATTCGCAACCAGCTATTTTGTGGAGGCTGCTATAGCTTCGGTG
TGGTGGCAGCTGTGGAAGGGGTGGTTGCCGCCGACCGTGGGTGCTTGAAT
GCCCTGAGCGACGAGCAGATTATAGACTGCGATGCGGCAAACAACGGGTG
CGAGGGAGGGGACCCTCAGATTGCCTTAACGTACGTCGTGGACCAACCAC
TAGTCGCGAAAAGCGATTATCCCTTCAATGCCGGGAAAGGTCATGCAAGC
CAGTGTGCGCTGAATGAAGCAGTAGCCCCGGCGTCGCAAGTACAAAGTTA
TCTGTACGTGCAGCCCTGCGATGAGACAGTGCTGATGCAGGCGGTGGCTA
GGGGGCCGGTGGTGGTGGCGATCGATGCCTACTGTGACGCCTTCATGCAA
TACTCGGGAGGCGTGCTTTCAGATTCATGTGTGGACGTCGCAGGGGCTGC
TGCTGCGGGGACGACGTCGATGGACGCCGTATGTGAGGATTCTTTGAACC
ACGCTGTGGCCATAGTGGGCTACGGGGCTGATGGAAACACGGGGTTGAAA
TACTGGATTATCAAAAACAGCTGGGGCACGTCGTGGGGAGAAAGGGGATT
TGCGCGCGTGTTGCGTGGGGGGGGGACAGAAGGGGAGGAAGGTAAGGATT
GTGGTGTAGGGTGTTTGGAGTACTACAACTTCTTGCCCACGGGTGGCGTG
GCGTTTGTGAATGGTACGGCGTTTTCGGACAACGACTTTCCCAAGGGGGA
TATGGACGAAGATGCTCAGAGAGAATTATTTTTCATGGACATTCTCGTGG
GCATGGCGGTAGTCTTGGCCGTGCTTATGGTGATGAGCGTGCCCAAATTG
CGGCGTCAACAAGTTCAGTCTGGCGCAGAGCCCTTACTGCAGTTGGAAGA
CAAGGAAGAAGAGGATGACGAAAGGGGGGTCACAACTCTTGCAAACTAAT
GGTAGTCGATGAATGAATCGAAATTGAAGAAAGAAGCACCCACCACTTGT
ACAGGAAGACTTGCATTTTTAAATCGGGAAACCATGTGATTATCATGAGC
TTCGTCGACAGGCCTTGTCATCGCCCGGAAAGTGGGCACACGGTGTTCCA
CAAGCAGAGGGCTTTCTCTATGGAAATGCAACAACTGGACCAATCCAGAC
TTTGACTCGATGTCTGCAGCACTCTCTTTGTGATATCGAAGTACTCGTCG
GCGGACGCACCAATCTTTTTTACTTACTGTTGTTTTCTTCCCGTCCGCTT
AGCTGCATCAGTCTCATTCGCCTCCCGCCCTAATAGGACTTGCAATGGCC
ATCGTCGACGACAACCCCACGGGCCCCACGCCCACCAACCCCAAGAAGGG
CAAAAAGAAGAGCCCGCGTACCTCCGCGGCCCCCGAAAAGATGCCCAAAC
CCTTGTCGTCAGTCGATTCTGCCGTTATGGAGAAGGAGGAGGAAGAGACT
TCTGCCCAGGCCGAAGCGACCATTGCCCCAGAGGAAGAGACTGATACGGA
TGCTGGGCTTCCGTACGTGGCACAAATGGCTGCAGACACTACCTCAATGG
TATTGGCAGAGTCCTATCTGTTGACGCAGCGTGGTTATGAGACGCTCAAA
TCGATTGACGCCCGTGTTGGGGTGTCCTCCCGGTTGCTCGCCTTGGACCA
GAGCGTCGGCGTGAGCAAGAGGGTGGTCTCCACTGCCGAGGCCTTGACTA
CGCGCGCACAGGCCCTGGACACTAAGTACAAGGTCGTCTCTAAGATCAAG
GACACAGCCGAGGCCGTGAGTGAGCGAGCCCTTGAATATAAGTACGTGGA
CTCGGGTGCGAAGCTTGTCGGGAAGTGGGGACGTTCCACTCTTGCCAAGA
CCCGTCAGAAGATCGTCACACGCAGCACCAAGGGAGGGAAGGACGCGAAG
ACGGTTTCGCCTGTACCTTTGACTGGGGAGGAGGATGTCCCCATCGATCT
GTCAAAGAAGTAATTGACTTGAGCCGTGGAAAGGGGACGGCCTGAAGGAG
GGAGAGAGGAAGAGGGGGGTTCATCACTATTCGGTTTGTGTGTATGTGTT
TTTAAGAGCAGCAGCAGTACCAGTACAGCAGGACACGTAGGCATGTAAGC
AGGGAGCAGTCGTCTTTCACAGCCCCCAATTTTGAAAATAATGCCTGTCC
GTGGAAGCAGGGGAGGGAGACGATGAGATAAAGAGGTGGCGAAGGAGTTA
AGGTAAAAGAAGTACCCCGACAATACTAAGAAAGCCGTTCTTAATTTGTT
TGGCGGCTGTAGATTTGATTTTGATTCATGTATGGCGATGGACGCAAAAG
CAAAGCGAAGGAGAAAAAAAGGTGGAGGGGGAAGAGGCATGGTCGTCGGA
CGACTGGGGATGGGTGGGGAAGCAGTCAATATGATAGAAATTGCTTGAAG
AAGGAAACGAATAAATAAGAAGAAGCATAAAAAATAAGAAGAAGGGTAAA
ACGAAAGGAAGGAAAGAAACGTACTTTTGATG back to topCoding sequence (CDS) from alignment at scaffold_56:76985..79966+ >mRNA_10595 ID=mRNA_10595|Name=jgi.p|Nanoce1779_2|560957|organism=Nannochloropsis oceanica|type=CDS|length=3825bp|location=Sequence derived from alignment at scaffold_56:76985..79966+ (Nannochloropsis oceanica) ATGAAACATGTGTTGTTGTCTTCACCCCTTTGTGGCCGTCTTTCCTTCCT CTGCCTCATCGTGCCCCTCGTCCTTCTCCCACTCGCCGGGGCCACCGTCT CCACGACCGCGGAGTTCGACGCTTGGATGGCCCAACACCATAAAATGTAT GGCTCTGCGGACGAAAAGGCACAGCGATACCAGCATTGGCTCAAGGCCTA TGAACGTGTGCAGCAGCACGCTCACCCGCACTACTCGTTAGGGCTGAATG AGATGAGTGATTGGTCCCCTGCGGAGCATGCGCAACGCTTACCACGCGGC GGTGCCCTCGACCACTTCGGGAGCGAGCGCCGTATTGGCTTTCACATTCC GGCCGGGTGGCGTCGAAAATTTGGCGTCACATCCATTCGCAACCAGCTAT TTTGTGGAGGCTGCTATAGCTTCGGTGTGGTGGCAGCTGTGGAAGGGGTG GTTGCCGCCGACCGTGGGTGCTTGAATGCCCTGAGCGACGAGCAGATTAT AGACTGCGATGCGGCAAACAACGGGTGCGAGGGAGGGGACCCTCAGATTG CCTTAACGTACGTCGTGGACCAACCACTAGTCGCGAAAAGCGATTATCCC TTCAATGCCGGGAAAGGTCATGCAAGCCAGTGTGCGCTGAATGAAGCAGT AGCCCCGGCGTCGCAAGTACAAAGTTATCTGTACGTGCAGCCCTGCGATG AGACAGTGCTGATGCAGGCGGTGGCTAGGGGGCCGGTGGTGGTGGCGATC GATGCCTACTGTGACGCCTTCATGCAATACTCGGGAGGCGTGCTTTCAGA TTCATGTGTGGACGATTCTTTGAACCACGCTGTGGCCATAGTGGGCTACG GGGCTGATGGAAACACGGGGTTGAAATACTGGATTATCAAAAACAGCTGG GGCACGTCGTGGGGAGAAAGGGGATTTGCGCGCGTGTTGCGTGGGGGGGG GACAGAAGGGGAGGAAGGTAAGGATTGTGGTGTAGGGTGTTTGGAGTACT ACAACTTCTTGCCCACGGGTGGCGTGGCGTTTGTGAATGGTACGGCGTTT TCGGACAACGACTTTCCCAAGGGGGATATGGACGAAGATGCTCAGAGAGA ATTATTTTTCATGGACATTCTCGTGGGCATGGCGGTAGTCTTGGCCGTGC TTATGGTGATGAGCGTGCCCAAATTGCGGCGTCAACAAGTTCAGTCTGGC GCAGAGCCCTTACTGCAGTTGGAAGACAAGGAAGAAGAGGATGACGAAAG GGGGGTCACAACTCTTGCAAACTAAATGAAACATGTGTTGTTGTCTTCAC CCCTTTGTGGCCGTCTTTCCTTCCTCTGCCTCATCGTGCCCCTCGTCCTT CTCCCACTCGCCGGGGCCACCGTCTCCACGACCGCGGAGTTCGACGCTTG GATGGCCCAACACCATAAAATGTATGGCTCTGCGGACGAAAAGGCACAGC GATACCAGCATTGGCTCAAGGCCTATGAACGTGTGCAGCAGCACGCTCAC CCGCACTACTCGTTAGGGCTGAATGAGATGAGTGATTGGTCCCCTGCGGA GCATGCGCAACGCTTACCACGCGGCGGTGCCCTCGACCACTTCGGGAGCG AGCGCCGTATTGGCTTTCACATTCCGGCCGGGTGGCGTCGAAAATTTGGC GTCACATCCATTCGCAACCAGCTATTTTGTGGAGGCTGCTATAGCTTCGG TGTGGTGGCAGCTGTGGAAGGGGTGGTTGCCGCCGACCGTGGGTGCTTGA ATGCCCTGAGCGACGAGCAGATTATAGACTGCGATGCGGCAAACAACGGG TGCGAGGGAGGGGACCCTCAGATTGCCTTAACGTACGTCGTGGACCAACC ACTAGTCGCGAAAAGCGATTATCCCTTCAATGCCGGGAAAGGTCATGCAA GCCAGTGTGCGCTGAATGAAGCAGTAGCCCCGGCGTCGCAAGTACAAAGT TATCTGTACGTGCAGCCCTGCGATGAGACAGTGCTGATGCAGGCGGTGGC TAGGGGGCCGGTGGTGGTGGCGATCGATGCCTACTGTGACGCCTTCATGC AATACTCGGGAGGCGTGCTTTCAGATTCATGTGTGGACGATTCTTTGAAC CACGCTGTGGCCATAGTGGGCTACGGGGCTGATGGAAACACGGGGTTGAA ATACTGGATTATCAAAAACAGCTGGGGCACGTCGTGGGGAGAAAGGGGAT TTGCGCGCGTGTTGCGTGGGGGGGGGACAGAAGGGGAGGAAGGTAAGGAT TGTGGTGTAGGGTGTTTGGAGTACTACAACTTCTTGCCCACGGGTGGCGT GGCGTTTGTGAATGGTACGGCGTTTTCGGACAACGACTTTCCCAAGGGGG ATATGGACGAAGATGCTCAGAGAGAATTATTTTTCATGGACATTCTCGTG GGCATGGCGGTAGTCTTGGCCGTGCTTATGGTGATGAGCGTGCCCAAATT GCGGCGTCAACAAGTTCAGTCTGGCGCAGAGCCCTTACTGCAGTTGGAAG ACAAGGAAGAAGAGGATGACGAAAGGGGGGTCACAACTCTTGCAAACTAA ATGAAACATGTGTTGTTGTCTTCACCCCTTTGTGGCCGTCTTTCCTTCCT CTGCCTCATCGTGCCCCTCGTCCTTCTCCCACTCGCCGGGGCCACCGTCT CCACGACCGCGGAGTTCGACGCTTGGATGGCCCAACACCATAAAATGTAT GGCTCTGCGGACGAAAAGGCACAGCGATACCAGCATTGGCTCAAGGCCTA TGAACGTGTGCAGCAGCACGCTCACCCGCACTACTCGTTAGGGCTGAATG AGATGAGTGATTGGTCCCCTGCGGAGCATGCGCAACGCTTACCACGCGGC GGTGCCCTCGACCACTTCGGGAGCGAGCGCCGTATTGGCTTTCACATTCC GGCCGGGTGGCGTCGAAAATTTGGCGTCACATCCATTCGCAACCAGCTAT TTTGTGGAGGCTGCTATAGCTTCGGTGTGGTGGCAGCTGTGGAAGGGGTG GTTGCCGCCGACCGTGGGTGCTTGAATGCCCTGAGCGACGAGCAGATTAT AGACTGCGATGCGGCAAACAACGGGTGCGAGGGAGGGGACCCTCAGATTG CCTTAACGTACGTCGTGGACCAACCACTAGTCGCGAAAAGCGATTATCCC TTCAATGCCGGGAAAGGTCATGCAAGCCAGTGTGCGCTGAATGAAGCAGT AGCCCCGGCGTCGCAAGTACAAAGTTATCTGTACGTGCAGCCCTGCGATG AGACAGTGCTGATGCAGGCGGTGGCTAGGGGGCCGGTGGTGGTGGCGATC GATGCCTACTGTGACGCCTTCATGCAATACTCGGGAGGCGTGCTTTCAGA TTCATGTGTGGACGATTCTTTGAACCACGCTGTGGCCATAGTGGGCTACG GGGCTGATGGAAACACGGGGTTGAAATACTGGATTATCAAAAACAGCTGG GGCACGTCGTGGGGAGAAAGGGGATTTGCGCGCGTGTTGCGTGGGGGGGG GACAGAAGGGGAGGAAGGTAAGGATTGTGGTGTAGGGTGTTTGGAGTACT ACAACTTCTTGCCCACGGGTGGCGTGGCGTTTGTGAATGGTACGGCGTTT TCGGACAACGACTTTCCCAAGGGGGATATGGACGAAGATGCTCAGAGAGA ATTATTTTTCATGGACATTCTCGTGGGCATGGCGGTAGTCTTGGCCGTGC TTATGGTGATGAGCGTGCCCAAATTGCGGCGTCAACAAGTTCAGTCTGGC GCAGAGCCCTTACTGCAGTTGGAAGACAAGGAAGAAGAGGATGACGAAAG GGGGGTCACAACTCTTGCAAACTAA back to top
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