jgi.p|Nanoce1779_2|611464, mRNA_10594 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|611464
Unique Name	mRNA_10594
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1524
Alignment location	scaffold_56:75283..76806 +

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Properties


Property Name	Value
TranscriptId	611550
Track	FilteredModels2
ProteinId	611464

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_56	supercontig	scaffold_56:75283..76806 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611464	gene_10594	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611464	mRNA_10594-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10594	CDS_10594	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_56:75283..76806+
coding sequence from alignment at scaffold_56:75283..76806+

mRNA sequence

>mRNA_10594 ID=mRNA_10594|Name=jgi.p|Nanoce1779_2|611464|organism=Nannochloropsis oceanica|type=mRNA|length=1524bp
CAGCACGCAGGCATGCACCTCGGCAAAGGCATTATGCGAGCCCTTTTCAT
CCACAGACCGTCTCCACCACCGACACTCTCCGATGCAGACCATGATCGCC
TAGTTCAGGCGGCTTACAAGGGAGATTTGCCGCAGCTACGGCATCTGGCT
CAAGAGAAGCCGAGCTTTGCGCATGCCATGTATAGTGCCATCGTCCACGA
GGACGGCTGGAATGTCTTGATGCTTTCGACGCTCTTTTGCCACATGGAGG
TGATTAAATGGCTGATAACCGGATGTGCAAGCAAGGAGAATGATGAAGAG
ACAGAGGAAGCGGCTGGAAATGAGGCAGAGGAAGCTAGCACTGACGTCGC
CGTAGCACATCAGATCTCGCAAATGATCAACCAACAAGATCGAGAAGGCA
TCACAGCCGCTTTCTTGGCGGCTTATCACGACCATCGGTCCCTCCTAGCC
TTACTTCTGGCTCATGGCGCGGACCCCAATAAGCAGCACAAGGACGGGCT
TTCCCCTTTGGGCGTGGCTATCTATCGTGGGCACTTACAGCTGGTCCGTG
AGGTCTTGCTACCGCATCCAAGACTTGATATCGATGCCCGGGACGACGCC
GGCGGACGCACAGCATTGTTTCAAGCGGCGTACTGGGGGAGAACTGAGGC
GTTGCAGTTGTTACTTCGGGACACGAGAGAGGGTGGTGGAGGGGCTGACC
CGACGGTTTTGACGAAAATGGCCACTTGCGCTGTGCAGGTAGCGCGGATC
AAGGGACATAAGGGGTGTGTGATGTTGCTCGAGGTAAGACGACAAGAAAA
ATACTGAGGAAGGAGGATAGGATGGTGAACAATGACGGCAGATAACGAGG
GAGGGGGGGCGACGTGAATTCTGACCCAACGGCGTTTCCCCTTCGAACAT
ACAGGAATGGGAGAGAACCTTCTTGTTGCACAAGCTACGCGGTATTCATG
ACGCCGCCTTGGCGAGGGAAGTGTCAACAGCTGCCTACTCCTCATTTTCG
GCGTTGGCAACAATAGCGGGATCATTGCCGTCGCCATCGTTTACACTTAG
TGGAACAGCAAGTGGAAATGCTTCAGAAGGAGCCATCCCCCGGCTGCAGA
TGCACATGGTTGGGGACGAGACCAAAGGCCTGCTGGAGGTGAAGAGAGAC
ACAAATACGGGCATGAATTATGCTTTCACGGCCCTCGTATTGGGGATGGT
GGTAGCGGAGCTCAAAGGCGATCTATTCGGAGAATTGCAGGAGTACATGG
GCCGCACATGCGGTTGGATTGAGGAGTGAATAAGTTAGGTGGATCGTCCT
GAGGCAGGGAAAGAGTTGTACAGAATGAATCCGTTGGCTTCTGTCTTATC
CTTTTTGCTTGAATTTGTGGGCTGTATGACAACCACAAGGAATGGAAATA
ATAAAGTTTGAGAAGAGGTATAGCACTGTTTGGTGCTTCTCTGAGGGGGG
AGGATTTTTCTCTTTACTGACCTTGCTAGAAATTAACTTCTTACCGAAAG
TCAGATTGTTAAAGCAAAATGGCG

protein sequence of jgi.p|Nanoce1779_2|611464

>mRNA_10594-protein ID=mRNA_10594-protein|Name=jgi.p|Nanoce1779_2|611464|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MHLGKGIMRALFIHRPSPPPTLSDADHDRLVQAAYKGDLPQLRHLAQEKP
SFAHAMYSAIVHEDGWNVLMLSTLFCHMEVIKWLITGCASKENDEETEEA
AGNEAEEASTDVAVAHQISQMINQQDREGITAAFLAAYHDHRSLLALLLA
HGADPNKQHKDGLSPLGVAIYRGHLQLVREVLLPHPRLDIDARDDAGGRT
ALFQAAYWGRTEALQLLLRDTREGGGGADPTVLTKMATCAVQVARIKGHK
GCVMLLEVRRQEKY*

mRNA from alignment at scaffold_56:75283..76806+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10594 ID=mRNA_10594|Name=jgi.p|Nanoce1779_2|611464|organism=Nannochloropsis oceanica|type=mRNA|length=1524bp|location=Sequence derived from alignment at scaffold_56:75283..76806+ (Nannochloropsis oceanica)
CAGCACGCAGGCATGCACCTCGGCAAAGGCATTATGCGAGCCCTTTTCAT
CCACAGACCGTCTCCACCACCGACACTCTCCGATGCAGACCATGATCGCC
TAGTTCAGGCGGCTTACAAGGGAGATTTGCCGCAGCTACGGCATCTGGCT
CAAGAGAAGCCGAGCTTTGCGCATGCCATGTATAGTGCCATCGTCCACGA
GGACGGCTGGAATGTCTTGATGCTTTCGACGCTCTTTTGCCACATGGAGG
TGATTAAATGGCTGATAACCGGATGTGCAAGCAAGGAGAATGATGAAGAG
ACAGAGGAAGCGGCTGGAAATGAGGCAGAGGAAGCTAGCACTGACGTCGC
CGTAGCACATCAGATCTCGCAAATGATCAACCAACAAGATCGAGAAGGCA
TCACAGCCGCTTTCTTGGCGGCTTATCACGACCATCGGTCCCTCCTAGCC
TTACTTCTGGCTCATGGCGCGGACCCCAATAAGCAGCACAAGGACGGGCT
TTCCCCTTTGGGCGTGGCTATCTATCGTGGGCACTTACAGCTGGTCCGTG
AGGTCTTGCTACCGCATCCAAGACTTGATATCGATGCCCGGGACGACGCC
GGCGGACGCACAGCATTGTTTCAAGCGGCGTACTGGGGGAGAACTGAGGC
GTTGCAGTTGTTACTTCGGGACACGAGAGAGGGTGGTGGAGGGGCTGACC
CGACGGTTTTGACGAAAATGGCCACTTGCGCTGTGCAGGTAGCGCGGATC
AAGGGACATAAGGGGTGTGTGATGTTGCTCGAGGTAAGACGACAAGAAAA
ATACTGAGGAAGGAGGATAGGATGGTGAACAATGACGGCAGATAACGAGG
GAGGGGGGGCGACGTGAATTCTGACCCAACGGCGTTTCCCCTTCGAACAT
ACAGGAATGGGAGAGAACCTTCTTGTTGCACAAGCTACGCGGTATTCATG
ACGCCGCCTTGGCGAGGGAAGTGTCAACAGCTGCCTACTCCTCATTTTCG
GCGTTGGCAACAATAGCGGGATCATTGCCGTCGCCATCGTTTACACTTAG
TGGAACAGCAAGTGGAAATGCTTCAGAAGGAGCCATCCCCCGGCTGCAGA
TGCACATGGTTGGGGACGAGACCAAAGGCCTGCTGGAGGTGAAGAGAGAC
ACAAATACGGGCATGAATTATGCTTTCACGGCCCTCGTATTGGGGATGGT
GGTAGCGGAGCTCAAAGGCGATCTATTCGGAGAATTGCAGGAGTACATGG
GCCGCACATGCGGTTGGATTGAGGAGTGAATAAGTTAGGTGGATCGTCCT
GAGGCAGGGAAAGAGTTGTACAGAATGAATCCGTTGGCTTCTGTCTTATC
CTTTTTGCTTGAATTTGTGGGCTGTATGACAACCACAAGGAATGGAAATA
ATAAAGTTTGAGAAGAGGTATAGCACTGTTTGGTGCTTCTCTGAGGGGGG
AGGATTTTTCTCTTTACTGACCTTGCTAGAAATTAACTTCTTACCGAAAG
TCAGATTGTTAAAGCAAAATGGCG

Coding sequence (CDS) from alignment at scaffold_56:75283..76806+

>mRNA_10594 ID=mRNA_10594|Name=jgi.p|Nanoce1779_2|611464|organism=Nannochloropsis oceanica|type=CDS|length=795bp|location=Sequence derived from alignment at scaffold_56:75283..76806+ (Nannochloropsis oceanica)
ATGCACCTCGGCAAAGGCATTATGCGAGCCCTTTTCATCCACAGACCGTC
TCCACCACCGACACTCTCCGATGCAGACCATGATCGCCTAGTTCAGGCGG
CTTACAAGGGAGATTTGCCGCAGCTACGGCATCTGGCTCAAGAGAAGCCG
AGCTTTGCGCATGCCATGTATAGTGCCATCGTCCACGAGGACGGCTGGAA
TGTCTTGATGCTTTCGACGCTCTTTTGCCACATGGAGGTGATTAAATGGC
TGATAACCGGATGTGCAAGCAAGGAGAATGATGAAGAGACAGAGGAAGCG
GCTGGAAATGAGGCAGAGGAAGCTAGCACTGACGTCGCCGTAGCACATCA
GATCTCGCAAATGATCAACCAACAAGATCGAGAAGGCATCACAGCCGCTT
TCTTGGCGGCTTATCACGACCATCGGTCCCTCCTAGCCTTACTTCTGGCT
CATGGCGCGGACCCCAATAAGCAGCACAAGGACGGGCTTTCCCCTTTGGG
CGTGGCTATCTATCGTGGGCACTTACAGCTGGTCCGTGAGGTCTTGCTAC
CGCATCCAAGACTTGATATCGATGCCCGGGACGACGCCGGCGGACGCACA
GCATTGTTTCAAGCGGCGTACTGGGGGAGAACTGAGGCGTTGCAGTTGTT
ACTTCGGGACACGAGAGAGGGTGGTGGAGGGGCTGACCCGACGGTTTTGA
CGAAAATGGCCACTTGCGCTGTGCAGGTAGCGCGGATCAAGGGACATAAG
GGGTGTGTGATGTTGCTCGAGGTAAGACGACAAGAAAAATACTGA

Synonyms

Publications