jgi.p|Nanoce1779_2|352785, mRNA_10593 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|352785
Unique NamemRNA_10593
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length971
Alignment locationscaffold_56:71877..72972 -

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Properties
Property NameValue
TranscriptId352871
TrackFilteredModels2
ProteinId352785
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:71877..72972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|352785gene_10593Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|352785mRNA_10593-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10593CDS_10593Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10593 ID=mRNA_10593|Name=jgi.p|Nanoce1779_2|352785|organism=Nannochloropsis oceanica|type=mRNA|length=971bp
CCGACACCCCCACTCGCAGGGATACGTTCGCGCCAACCATGGACAACGGC
AACAGCACCAACAGTTTGCACCCTTCGCCTTCCGGGGCTATGCCGGCAGC
GAATCCGACGCCTTCCAAGCCGGCCTTTGCGCCCCCTGCTTCTGTGTCTT
CATCTTCATCTTCTTCCATCAATGGAGCCACAGGAGGAGGAGCAGGACCA
GCCCCCATGCCCGTCCTCACGGTGACAGGCGGAGGAGGAGGAGCAGGAGG
GGGAGGGGGAGGGGCAGGAGGAGAGATGCCCAAGCTGAAGGTGGTGACGT
TCCCTCGTCCTTCTGCCTCTTCTTCCACTGTAGGCGGGGCTGCTCCTATC
AAGCTTACCGTGGCACCCCCCCCTTCAGCTTCTTCTTCTTCCGCCTCTTC
GACACAGGCAGCAGAATCTCAGCAGCAGCAACAACAGCAATTACAGCAAC
CAGTGAAAGAAGAGGATAACATGGATGAAGATGAGAAAGCCTTGGTAGAT
GCGGAAGACACGGACGGGATGGTCGACAAGGAAATGGCAGCAGCGGTGGC
GGGCGAGGCTCCTGTGTTGCTGAAGGAGGAGGGAGCGATCGAGGCGTACA
CAGAGGCGAGGTCTGAGCAGCAGAAGCAGCTGGAGGAGCTCAAGGCCAAG
CGGTCGGTGATCGAGGAACAAGCCGCCGCAACGGGCGCAGATAAGTCCCT
GCGGAAGTTGGAGTACCTCATGGCGCAGAGCGAGATGTTCGCGCATTTTT
TGGGGGCGCAGGTAAAGGGAGGGAGAGGGGAGAGAGGGGGAGGGATCAAT
CAACACAATTGAAGTACTTCACTCATATCAATCAAATCACCTGAATAAAT
CAAATGAAGTAAATCACTTGAATCAATCAAATCAATAAAATTTCTTGAAT
CAATCAGATAAATGAAATCACATCAATCAACTAAACCAACTAACTCACTC
ATGTCAATCAAATGAATCAAA
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protein sequence of jgi.p|Nanoce1779_2|352785

>mRNA_10593-protein ID=mRNA_10593-protein|Name=jgi.p|Nanoce1779_2|352785|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MDNGNSTNSLHPSPSGAMPAANPTPSKPAFAPPASVSSSSSSSINGATGG
GAGPAPMPVLTVTGGGGGAGGGGGGAGGEMPKLKVVTFPRPSASSSTVGG
AAPIKLTVAPPPSASSSSASSTQAAESQQQQQQQLQQPVKEEDNMDEDEK
ALVDAEDTDGMVDKEMAAAVAGEAPVLLKEEGAIEAYTEARSEQQKQLEE
LKAKRSVIEEQAAATGADKSLRKLEYLMAQSEMFAHFLGAQVKGGRGERG
GGINQHN*
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mRNA from alignment at scaffold_56:71877..72972-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10593 ID=mRNA_10593|Name=jgi.p|Nanoce1779_2|352785|organism=Nannochloropsis oceanica|type=mRNA|length=1096bp|location=Sequence derived from alignment at scaffold_56:71877..72972- (Nannochloropsis oceanica)
CCGACACCCCCACTCGCAGGGATACGTTCGCGCCAACCATGGACAACGGC
AACAGCACCAACAGTTTGCACCCTTCGCCTTCCGGGGCTATGCCGGCAGC
GAATCCGACGCCTTCCAAGCCGGCCTTTGCGCCCCCTGCTTCTGTGTCTT
CATCTTCATCTTCTTCCATCAATGGAGCCACAGGAGGAGGAGCAGGACCA
GCCCCCATGCCCGTCCTCACGGTGACAGGCGGAGGAGGAGGAGCAGGAGG
GGGAGGGGGAGGGGCAGGAGGAGAGATGCCCAAGCTGAAGGTGGTGACGT
TCCCTCGTCCTTCTGCCTCTTCTTCCACTGTAGGCGGGGCTGCTCCTATC
AAGCTTACCGTGGCACCCCCCCCTTCAGCTTCTTCTTCTTCCGCCTCTTC
GACACAGGCAGCAGAATCTCAGCAGCAGCAACAACAGCAATTACAGCAAC
CAGTGAAAGAAGAGGATAACATGGATGAAGATGAGAAAGCCTTGGTAGAT
GCGGAAGACACGGACGGGATGGTCGACAAGGAAATGGCAGCAGCGGTGGC
GGGCGAGGCTCCTGTGTTGCTGAAGGAGGAGGGAGCGATCGAGGCGTACA
CAGAGGCGAGGTCTGAGCAGCAGAAGCAGCTGGAGGAGCTCAAGGCCAAG
GTGAAGAGGGGAGATGGAGGGAGGAGGGGAGGAGGGGAGGGGGAGGGAGG
GACTTGGTGATGGGATGCGTTTTGGCCATGCGAGTCTCACCCCTTTCTCC
CTCCCTCCCTCTCTCCCTCCCTTAGCGGTCGGTGATCGAGGAACAAGCCG
CCGCAACGGGCGCAGATAAGTCCCTGCGGAAGTTGGAGTACCTCATGGCG
CAGAGCGAGATGTTCGCGCATTTTTTGGGGGCGCAGGTAAAGGGAGGGAG
AGGGGAGAGAGGGGGAGGGATCAATCAACACAATTGAAGTACTTCACTCA
TATCAATCAAATCACCTGAATAAATCAAATGAAGTAAATCACTTGAATCA
ATCAAATCAATAAAATTTCTTGAATCAATCAGATAAATGAAATCACATCA
ATCAACTAAACCAACTAACTCACTCATGTCAATCAAATGAATCAAA
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Coding sequence (CDS) from alignment at scaffold_56:71877..72972-

>mRNA_10593 ID=mRNA_10593|Name=jgi.p|Nanoce1779_2|352785|organism=Nannochloropsis oceanica|type=CDS|length=1548bp|location=Sequence derived from alignment at scaffold_56:71877..72972- (Nannochloropsis oceanica)
CGGTCGGTGATCGAGGAACAAGCCGCCGCAACGGGCGCAGATAAGTCCCT
GCGGAAGTTGGAGTACCTCATGGCGCAGAGCGAGATGTTCGCGCATTTTT
TGGGGGCGCAGGTAAAGGGAGGGAGAGGGGAGAGAGGGGGAGGGATCAAT
CAACACAATTGAATGGACAACGGCAACAGCACCAACAGTTTGCACCCTTC
GCCTTCCGGGGCTATGCCGGCAGCGAATCCGACGCCTTCCAAGCCGGCCT
TTGCGCCCCCTGCTTCTGTGTCTTCATCTTCATCTTCTTCCATCAATGGA
GCCACAGGAGGAGGAGCAGGACCAGCCCCCATGCCCGTCCTCACGGTGAC
AGGCGGAGGAGGAGGAGCAGGAGGGGGAGGGGGAGGGGCAGGAGGAGAGA
TGCCCAAGCTGAAGGTGGTGACGTTCCCTCGTCCTTCTGCCTCTTCTTCC
ACTGTAGGCGGGGCTGCTCCTATCAAGCTTACCGTGGCACCCCCCCCTTC
AGCTTCTTCTTCTTCCGCCTCTTCGACACAGGCAGCAGAATCTCAGCAGC
AGCAACAACAGCAATTACAGCAACCAGTGAAAGAAGAGGATAACATGGAT
GAAGATGAGAAAGCCTTGGTAGATGCGGAAGACACGGACGGGATGGTCGA
CAAGGAAATGGCAGCAGCGGTGGCGGGCGAGGCTCCTGTGTTGCTGAAGG
AGGAGGGAGCGATCGAGGCGTACACAGAGGCGAGGTCTGAGCAGCAGAAG
CAGCTGGAGGAGCTCAAGGCCAAGCGGTCGGTGATCGAGGAACAAGCCGC
CGCAACGGGCGCAGATAAGTCCCTGCGGAAGTTGGAGTACCTCATGGCGC
AGAGCGAGATGTTCGCGCATTTTTTGGGGGCGCAGGTAAAGGGAGGGAGA
GGGGAGAGAGGGGGAGGGATCAATCAACACAATTGAATGGACAACGGCAA
CAGCACCAACAGTTTGCACCCTTCGCCTTCCGGGGCTATGCCGGCAGCGA
ATCCGACGCCTTCCAAGCCGGCCTTTGCGCCCCCTGCTTCTGTGTCTTCA
TCTTCATCTTCTTCCATCAATGGAGCCACAGGAGGAGGAGCAGGACCAGC
CCCCATGCCCGTCCTCACGGTGACAGGCGGAGGAGGAGGAGCAGGAGGGG
GAGGGGGAGGGGCAGGAGGAGAGATGCCCAAGCTGAAGGTGGTGACGTTC
CCTCGTCCTTCTGCCTCTTCTTCCACTGTAGGCGGGGCTGCTCCTATCAA
GCTTACCGTGGCACCCCCCCCTTCAGCTTCTTCTTCTTCCGCCTCTTCGA
CACAGGCAGCAGAATCTCAGCAGCAGCAACAACAGCAATTACAGCAACCA
GTGAAAGAAGAGGATAACATGGATGAAGATGAGAAAGCCTTGGTAGATGC
GGAAGACACGGACGGGATGGTCGACAAGGAAATGGCAGCAGCGGTGGCGG
GCGAGGCTCCTGTGTTGCTGAAGGAGGAGGGAGCGATCGAGGCGTACACA
GAGGCGAGGTCTGAGCAGCAGAAGCAGCTGGAGGAGCTCAAGGCCAAG
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Synonyms
Publications