jgi.p|Nanoce1779_2|643322, mRNA_10590 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|643322
Unique Name	mRNA_10590
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2148
Alignment location	scaffold_56:59415..61562 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	643408
Track	FilteredModels2
ProteinId	643322

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_56	supercontig	scaffold_56:59415..61562 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|643322	gene_10590	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|643322	mRNA_10590-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10590	CDS_10590	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_56:59415..61562+
coding sequence from alignment at scaffold_56:59415..61562+

mRNA sequence

>mRNA_10590 ID=mRNA_10590|Name=jgi.p|Nanoce1779_2|643322|organism=Nannochloropsis oceanica|type=mRNA|length=2148bp
ATGGCAACATCGGCAGGGGTAGCCAGCGCCGCGTCGGAGAAGCTTCGGCC
TTTATACGCAGCGCTGCACGAGGCCTTTGAGGAAGAAGACCATGAAGCTG
CCTTGGTCGCTGCCACCAAGCTCCTCAAAGTTGCACCTGATGAGGTCGAG
GCACGGGCAGCCAAGGCAGTGGCCGAGCTTTACACGGGTGACTATGCTCT
CGCCTTGTCCACGGCGTTGCCTGCCCAGGAATTGGAGCGAGCTTATGCCC
TTTATCGGTTGGGGCGAGGCGTCGAAGCCTTGGCCATTCTGGATGCTAGT
GTACTGAAGGATGAGGAGTCTTTCCGGCATCTGCGGGGTCAGGCACTATT
TAAGGAGGGGCGATACGACGAGGCAGCGGATGTCTTTGCAGCGTTGGTGT
CCGAGGCGGGCGCGAATGGAGTGGAAGACCCTGAGTTGATGACAAATCTA
TATGCTGCCTTTGTGGCGGCGCGACGGGGCCAGGAAGCCCTGGCACGCTT
TCCTTTTAGCGAAGAACTGATGGATTCGTGCTACGAGCTTGCGTTCAACA
CGGGGGCCGCCATGATCGATGCAGGGGATCTCACAGCGGCGGAAGCGAGG
CTGCGCGAGGCGCGGGCGACGTGTGTGCGTGTGGGGGAGGAGGATGGGAT
GACCCCGTCGGCATTATTGGACGAAGGGAGCGGGATCCAGATTGAGCTGG
CGTATGTCCTGGCGGCGCAGGGGAGGCGAGGAGAGGCGTTTGAGATGGTG
ACGACGTTGATGAACAAGGCAAGCAAGCTTTCGGACCCCGTGGTGCGTGT
CCTGGCGATAAACAATGCAGCGGCCTTGAGGGAGGGGGGAAGGCACCACA
AGGATATGAGCAGCAACCTGAAGAAGATGAAAGGGCCGTGGAGGGAGGCC
AAAAGCAAGCTACTGCCCATGCAACGCGTGCTCTTGACGTTGAACAAGGC
GCTGATGCTCATGCACTCTGGCAAGATCGACGATGCCAAGCAGGTCCTAG
AGGCGGTCAAGGAGGAGGGTGGAAAGGAGGGAGGGCAGGCTTGGTGGCGG
GTGGCCATGCTGGAAATCGCCATCAAAATGCAAGACGATAAATCGCGTAC
TTCGTCCTACTCCCCCAACGCAGATTTGGCGGCTTTGCTGGAACGCGTGC
GTACTGAAGCCCCCTCTGCCGATGCGGAGAAGACCGTTGGGACGGCCCTC
GCTCAAGTTCTCGTCTACCAAGGCGACCTCCACGAAGCGGCTTCTGTCCT
GGAATCGATCGCTTCTCTTCAGGGCTACCCTGCCCATGCTGCCACTTTGG
CATCGCTGTACGCCAGACTCGGCCAAAAGGATAAGAGTGCCGCTGTCTTT
GACAAAGCTCTGGCCTCCTTCCCTCCCTTTCTCCCTCCCTCTTTTAAAAT
CAAACTTCTACAAGGAGCGGCGGCGGTGCGAACGGCGCAAGGGGATCATG
CAGGAGCAGCCAATGTGTTGAAGCGCTTATTGTCGGGAGGGGAGGACGTC
AAGGAGGAACTGGAGAGTGACGCACGCCTCCGGGCAGTGGCTGCACTGGT
GGTGGCTACCTCGTGGGTGGATGTCGGAGAAGCCGAATTTCTCGCACAGA
AGGAGCTACCGGCTGTTCACCTGGAAGAAGGGCTTGATGCCGAGGCCTTG
GAGGCCCACGGCTTGCCCAGAAGGCGGTCGTCGCTGGCGGGGCTGCGGCG
GACCTCCCTCCCTACCTCTGCAGCAGGAGCAGCAGCAGGGGGAGGGGGAG
GAGGAGCACCTCAAGAGCAAGAGCAAGAGCAACGGCAGCCAAAGAAGAAG
AACCCAGAGGCCATCAAGCGGAGACGCGCCCGGGCCCGTGCCGCCTATCT
TGCCGAACTGGCAGCCGCAGGGAAATACGACGCTGCCCGCCCAGGACCCC
CCCCGGACCCTGAGCGGTGGATCGCCAAAAGCCAGAGGTCGTACAACAAG
AGGGGAAAGAAGGGCAGGAGCCGGTTTGTGGGCGCGCAGGGATCCGGGGA
TGGTGCGCAGAAGGATACAGCGAGATTGGACGTGGCATCGCGGGTGGCAG
CGGAGAAGAAAAAGGGAGGGGGGGAGTTGGAGAAGGGGGGCGCGACGGGG
GGAGCTGGTGGGGTGAAGATGGCGGGCGGGAGGAGGAGGAAAAAGTGA

protein sequence of jgi.p|Nanoce1779_2|643322

>mRNA_10590-protein ID=mRNA_10590-protein|Name=jgi.p|Nanoce1779_2|643322|organism=Nannochloropsis oceanica|type=polypeptide|length=716bp
MATSAGVASAASEKLRPLYAALHEAFEEEDHEAALVAATKLLKVAPDEVE
ARAAKAVAELYTGDYALALSTALPAQELERAYALYRLGRGVEALAILDAS
VLKDEESFRHLRGQALFKEGRYDEAADVFAALVSEAGANGVEDPELMTNL
YAAFVAARRGQEALARFPFSEELMDSCYELAFNTGAAMIDAGDLTAAEAR
LREARATCVRVGEEDGMTPSALLDEGSGIQIELAYVLAAQGRRGEAFEMV
TTLMNKASKLSDPVVRVLAINNAAALREGGRHHKDMSSNLKKMKGPWREA
KSKLLPMQRVLLTLNKALMLMHSGKIDDAKQVLEAVKEEGGKEGGQAWWR
VAMLEIAIKMQDDKSRTSSYSPNADLAALLERVRTEAPSADAEKTVGTAL
AQVLVYQGDLHEAASVLESIASLQGYPAHAATLASLYARLGQKDKSAAVF
DKALASFPPFLPPSFKIKLLQGAAAVRTAQGDHAGAANVLKRLLSGGEDV
KEELESDARLRAVAALVVATSWVDVGEAEFLAQKELPAVHLEEGLDAEAL
EAHGLPRRRSSLAGLRRTSLPTSAAGAAAGGGGGGAPQEQEQEQRQPKKK
NPEAIKRRRARARAAYLAELAAAGKYDAARPGPPPDPERWIAKSQRSYNK
RGKKGRSRFVGAQGSGDGAQKDTARLDVASRVAAEKKKGGGELEKGGATG
GAGGVKMAGGRRRKK*

mRNA from alignment at scaffold_56:59415..61562+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10590 ID=mRNA_10590|Name=jgi.p|Nanoce1779_2|643322|organism=Nannochloropsis oceanica|type=mRNA|length=2148bp|location=Sequence derived from alignment at scaffold_56:59415..61562+ (Nannochloropsis oceanica)
ATGGCAACATCGGCAGGGGTAGCCAGCGCCGCGTCGGAGAAGCTTCGGCC
TTTATACGCAGCGCTGCACGAGGCCTTTGAGGAAGAAGACCATGAAGCTG
CCTTGGTCGCTGCCACCAAGCTCCTCAAAGTTGCACCTGATGAGGTCGAG
GCACGGGCAGCCAAGGCAGTGGCCGAGCTTTACACGGGTGACTATGCTCT
CGCCTTGTCCACGGCGTTGCCTGCCCAGGAATTGGAGCGAGCTTATGCCC
TTTATCGGTTGGGGCGAGGCGTCGAAGCCTTGGCCATTCTGGATGCTAGT
GTACTGAAGGATGAGGAGTCTTTCCGGCATCTGCGGGGTCAGGCACTATT
TAAGGAGGGGCGATACGACGAGGCAGCGGATGTCTTTGCAGCGTTGGTGT
CCGAGGCGGGCGCGAATGGAGTGGAAGACCCTGAGTTGATGACAAATCTA
TATGCTGCCTTTGTGGCGGCGCGACGGGGCCAGGAAGCCCTGGCACGCTT
TCCTTTTAGCGAAGAACTGATGGATTCGTGCTACGAGCTTGCGTTCAACA
CGGGGGCCGCCATGATCGATGCAGGGGATCTCACAGCGGCGGAAGCGAGG
CTGCGCGAGGCGCGGGCGACGTGTGTGCGTGTGGGGGAGGAGGATGGGAT
GACCCCGTCGGCATTATTGGACGAAGGGAGCGGGATCCAGATTGAGCTGG
CGTATGTCCTGGCGGCGCAGGGGAGGCGAGGAGAGGCGTTTGAGATGGTG
ACGACGTTGATGAACAAGGCAAGCAAGCTTTCGGACCCCGTGGTGCGTGT
CCTGGCGATAAACAATGCAGCGGCCTTGAGGGAGGGGGGAAGGCACCACA
AGGATATGAGCAGCAACCTGAAGAAGATGAAAGGGCCGTGGAGGGAGGCC
AAAAGCAAGCTACTGCCCATGCAACGCGTGCTCTTGACGTTGAACAAGGC
GCTGATGCTCATGCACTCTGGCAAGATCGACGATGCCAAGCAGGTCCTAG
AGGCGGTCAAGGAGGAGGGTGGAAAGGAGGGAGGGCAGGCTTGGTGGCGG
GTGGCCATGCTGGAAATCGCCATCAAAATGCAAGACGATAAATCGCGTAC
TTCGTCCTACTCCCCCAACGCAGATTTGGCGGCTTTGCTGGAACGCGTGC
GTACTGAAGCCCCCTCTGCCGATGCGGAGAAGACCGTTGGGACGGCCCTC
GCTCAAGTTCTCGTCTACCAAGGCGACCTCCACGAAGCGGCTTCTGTCCT
GGAATCGATCGCTTCTCTTCAGGGCTACCCTGCCCATGCTGCCACTTTGG
CATCGCTGTACGCCAGACTCGGCCAAAAGGATAAGAGTGCCGCTGTCTTT
GACAAAGCTCTGGCCTCCTTCCCTCCCTTTCTCCCTCCCTCTTTTAAAAT
CAAACTTCTACAAGGAGCGGCGGCGGTGCGAACGGCGCAAGGGGATCATG
CAGGAGCAGCCAATGTGTTGAAGCGCTTATTGTCGGGAGGGGAGGACGTC
AAGGAGGAACTGGAGAGTGACGCACGCCTCCGGGCAGTGGCTGCACTGGT
GGTGGCTACCTCGTGGGTGGATGTCGGAGAAGCCGAATTTCTCGCACAGA
AGGAGCTACCGGCTGTTCACCTGGAAGAAGGGCTTGATGCCGAGGCCTTG
GAGGCCCACGGCTTGCCCAGAAGGCGGTCGTCGCTGGCGGGGCTGCGGCG
GACCTCCCTCCCTACCTCTGCAGCAGGAGCAGCAGCAGGGGGAGGGGGAG
GAGGAGCACCTCAAGAGCAAGAGCAAGAGCAACGGCAGCCAAAGAAGAAG
AACCCAGAGGCCATCAAGCGGAGACGCGCCCGGGCCCGTGCCGCCTATCT
TGCCGAACTGGCAGCCGCAGGGAAATACGACGCTGCCCGCCCAGGACCCC
CCCCGGACCCTGAGCGGTGGATCGCCAAAAGCCAGAGGTCGTACAACAAG
AGGGGAAAGAAGGGCAGGAGCCGGTTTGTGGGCGCGCAGGGATCCGGGGA
TGGTGCGCAGAAGGATACAGCGAGATTGGACGTGGCATCGCGGGTGGCAG
CGGAGAAGAAAAAGGGAGGGGGGGAGTTGGAGAAGGGGGGCGCGACGGGG
GGAGCTGGTGGGGTGAAGATGGCGGGCGGGAGGAGGAGGAAAAAGTGA

Coding sequence (CDS) from alignment at scaffold_56:59415..61562+

>mRNA_10590 ID=mRNA_10590|Name=jgi.p|Nanoce1779_2|643322|organism=Nannochloropsis oceanica|type=CDS|length=2148bp|location=Sequence derived from alignment at scaffold_56:59415..61562+ (Nannochloropsis oceanica)
ATGGCAACATCGGCAGGGGTAGCCAGCGCCGCGTCGGAGAAGCTTCGGCC
TTTATACGCAGCGCTGCACGAGGCCTTTGAGGAAGAAGACCATGAAGCTG
CCTTGGTCGCTGCCACCAAGCTCCTCAAAGTTGCACCTGATGAGGTCGAG
GCACGGGCAGCCAAGGCAGTGGCCGAGCTTTACACGGGTGACTATGCTCT
CGCCTTGTCCACGGCGTTGCCTGCCCAGGAATTGGAGCGAGCTTATGCCC
TTTATCGGTTGGGGCGAGGCGTCGAAGCCTTGGCCATTCTGGATGCTAGT
GTACTGAAGGATGAGGAGTCTTTCCGGCATCTGCGGGGTCAGGCACTATT
TAAGGAGGGGCGATACGACGAGGCAGCGGATGTCTTTGCAGCGTTGGTGT
CCGAGGCGGGCGCGAATGGAGTGGAAGACCCTGAGTTGATGACAAATCTA
TATGCTGCCTTTGTGGCGGCGCGACGGGGCCAGGAAGCCCTGGCACGCTT
TCCTTTTAGCGAAGAACTGATGGATTCGTGCTACGAGCTTGCGTTCAACA
CGGGGGCCGCCATGATCGATGCAGGGGATCTCACAGCGGCGGAAGCGAGG
CTGCGCGAGGCGCGGGCGACGTGTGTGCGTGTGGGGGAGGAGGATGGGAT
GACCCCGTCGGCATTATTGGACGAAGGGAGCGGGATCCAGATTGAGCTGG
CGTATGTCCTGGCGGCGCAGGGGAGGCGAGGAGAGGCGTTTGAGATGGTG
ACGACGTTGATGAACAAGGCAAGCAAGCTTTCGGACCCCGTGGTGCGTGT
CCTGGCGATAAACAATGCAGCGGCCTTGAGGGAGGGGGGAAGGCACCACA
AGGATATGAGCAGCAACCTGAAGAAGATGAAAGGGCCGTGGAGGGAGGCC
AAAAGCAAGCTACTGCCCATGCAACGCGTGCTCTTGACGTTGAACAAGGC
GCTGATGCTCATGCACTCTGGCAAGATCGACGATGCCAAGCAGGTCCTAG
AGGCGGTCAAGGAGGAGGGTGGAAAGGAGGGAGGGCAGGCTTGGTGGCGG
GTGGCCATGCTGGAAATCGCCATCAAAATGCAAGACGATAAATCGCGTAC
TTCGTCCTACTCCCCCAACGCAGATTTGGCGGCTTTGCTGGAACGCGTGC
GTACTGAAGCCCCCTCTGCCGATGCGGAGAAGACCGTTGGGACGGCCCTC
GCTCAAGTTCTCGTCTACCAAGGCGACCTCCACGAAGCGGCTTCTGTCCT
GGAATCGATCGCTTCTCTTCAGGGCTACCCTGCCCATGCTGCCACTTTGG
CATCGCTGTACGCCAGACTCGGCCAAAAGGATAAGAGTGCCGCTGTCTTT
GACAAAGCTCTGGCCTCCTTCCCTCCCTTTCTCCCTCCCTCTTTTAAAAT
CAAACTTCTACAAGGAGCGGCGGCGGTGCGAACGGCGCAAGGGGATCATG
CAGGAGCAGCCAATGTGTTGAAGCGCTTATTGTCGGGAGGGGAGGACGTC
AAGGAGGAACTGGAGAGTGACGCACGCCTCCGGGCAGTGGCTGCACTGGT
GGTGGCTACCTCGTGGGTGGATGTCGGAGAAGCCGAATTTCTCGCACAGA
AGGAGCTACCGGCTGTTCACCTGGAAGAAGGGCTTGATGCCGAGGCCTTG
GAGGCCCACGGCTTGCCCAGAAGGCGGTCGTCGCTGGCGGGGCTGCGGCG
GACCTCCCTCCCTACCTCTGCAGCAGGAGCAGCAGCAGGGGGAGGGGGAG
GAGGAGCACCTCAAGAGCAAGAGCAAGAGCAACGGCAGCCAAAGAAGAAG
AACCCAGAGGCCATCAAGCGGAGACGCGCCCGGGCCCGTGCCGCCTATCT
TGCCGAACTGGCAGCCGCAGGGAAATACGACGCTGCCCGCCCAGGACCCC
CCCCGGACCCTGAGCGGTGGATCGCCAAAAGCCAGAGGTCGTACAACAAG
AGGGGAAAGAAGGGCAGGAGCCGGTTTGTGGGCGCGCAGGGATCCGGGGA
TGGTGCGCAGAAGGATACAGCGAGATTGGACGTGGCATCGCGGGTGGCAG
CGGAGAAGAAAAAGGGAGGGGGGGAGTTGGAGAAGGGGGGCGCGACGGGG
GGAGCTGGTGGGGTGAAGATGGCGGGCGGGAGGAGGAGGAAAAAGTGA

Synonyms

Publications