jgi.p|Nanoce1779_2|634112, mRNA_10588 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|634112
Unique Name	mRNA_10588
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2072
Alignment location	scaffold_56:53105..55280 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	634198
Track	FilteredModels2
ProteinId	634112

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_56	supercontig	scaffold_56:53105..55280 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|634112	gene_10588	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|634112	mRNA_10588-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10588	CDS_10588	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_56:53105..55280+
coding sequence from alignment at scaffold_56:53105..55280+

mRNA sequence

>mRNA_10588 ID=mRNA_10588|Name=jgi.p|Nanoce1779_2|634112|organism=Nannochloropsis oceanica|type=mRNA|length=2072bp
CACCAGCTCCTCCCTCTCCTGCTACCCCTTGTGCAACAGTTGTACGCGGC
GTTTGTGTCTTTGTACCTGTAGTGTGTGGTGCCGTTGCGGGTCGTATAGT
AGGTAGCTCAGACGTCATATCAAACGCGGTAGGCGATGCATGGCGGGATG
GCTGGGATCGTGCGGTGCGTTGGCAACTCAAGCCAGTCGTATGCACGCAA
AGGACCCGCAGGCGTTTGACTGGCCCGCTTGAGCCCTGTTGTACAGATTC
TTTCCTATATGTGAGAGCTTAGATTGGCATGCTGGTGGTCAGGTGTGCTG
GCGTCACTGTTTGATAGTCCATCCAACACTGGTGGAGTGTCGCCTGCCTT
CGCCTTGCCTTCAACCATAACGTTACGCGTTATACAGCCTGGGTCGTATG
GTCGCCTCGATGGGCCTTCCCCTCCTTCAAGCATAGACACTTTTAAATAG
AAACATCTATGCGGTTAACAGTTGTCGGCATTGTCGGGGGCATCTTGTTG
GACTGAACCTGCTTCGCTAACCCAAATGAGGCACGCATGGGCCTCTCTGT
ACACATGGCCGCCTATTTCTCACGGTATTGATATTTATAGCACACACAGG
CCTACATCACGCAATATACGCTTAAATCAACTTTTGCGCTTATGTGTCAT
CTGAGGTTTGCCCTACTCCCGCATGCTCCGATGCCTCTCACTTCCCCACC
ATCCCCACCAATACCACCCCAAGAAATCGGATGATGCATCAATGCGTCCT
CCTCACCACCGGCGTTCTCTTGGCTGCCGTCAGTGCCACCACTACCAGCA
TGACACATGAGTCTGAACCCCAGCACCAGAGCCTCCGTGGTGTCCGTCGT
GCCCTCCAATGGGGATGGCCCTCCATTTTCCCTGATATTATTGAGGAGGG
GGAGGCCGAGATCGAGAGTGGCGTGACGGACGTGCCGCTCAATAAAATCA
TGGGAGAGCAGGTCAAGGCAGAAAGTGGAGGGGCAATATTGCTAGAGGGG
AAATCCCGAGAAGGTGTGTGGGTGTTAGCGGATACGATGGTAAAGGAGGA
AGAGCACAACATAAACATTCCACGGACGGCGATGCTGGGTGGAGAGCGAC
CGGCCAAGGTGGTGCTACCCGACAACTACCCCCAGAAGAGCGAGCACAAT
GATAAGAAGCTGTGGCCTATGATTTTAATGCTCCACGGTTACGGTTCTGA
CGCGCCTTACCATGACCACTTCTTGGGTCTGAGTGAACGGGTGAATCGGC
ACGGTGGGTTTCTGGCGCTGATGCCGAATGGGACGCTCAACAGCCAAGGC
CGCCGATTTTGGAATGGACTACGTTGCTGTGATTTCGATCACCAGGGGCC
TGATGACGTAGCTTACTTGACCGGGCTGATTGCTGAGGCAGTTAAGTCAT
TGAGTGTTGATCCCAAACGCGTGTACATGCTAGGGCATTCGAACGGAGGG
GCGATGACTCAAATCCTGGGTTGTGACCACGCTGAGCTCTTTGCGGCCTT
GGCCAGCGTGACGCCCGGAGAAATTCCGAGCGTGTGTGCACCATCGCACC
CGGTCTCTGTGCTGGAGGTGTGCGCTAGCAAGGATCCGATTGTGAAGCTG
GACTTGTGTACAAGTGTTATCGAGAATTGGACTTTAAACGATGGATGTGC
CAAGAAGCCGACGTTTGAGAAGACGAGGGACTACGACTGTGACTTGTCTA
AGCCGGTGGATGATAATAAAGGGTATGACCAGTGGAGGGATCATAATTGC
ATGTTGTCTGGGAATGAGACGGAGATGAGTGGGTGGACGTGTGAAGGGGG
GAGCGAGGTAGAGTTCTGGTGGATGCGGGGGGCGATGCATAATCCGGCCT
TCTCGAGCCAGTGGTCGGATGACGTGGTGGCATGGTTGATGAGTAAGACT
TACGTTGAGGCTTGAGTGCTAAGGGTCCGTTAAGGGGGAGTAAAGGGAGG
AGATGGGGTATGGGAGGTTGTTTTGGGAAAGAGAAGTGGTGTTGTGAGCA
TACGCATTTTCCGGTATTTGTGGCAGAGAATGAATGGGTGCGATGGAGTT
GAGAGAATGACAAGAAAGAGGG

protein sequence of jgi.p|Nanoce1779_2|634112

>mRNA_10588-protein ID=mRNA_10588-protein|Name=jgi.p|Nanoce1779_2|634112|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MMHQCVLLTTGVLLAAVSATTTSMTHESEPQHQSLRGVRRALQWGWPSIF
PDIIEEGEAEIESGVTDVPLNKIMGEQVKAESGGAILLEGKSREGVWVLA
DTMVKEEEHNINIPRTAMLGGERPAKVVLPDNYPQKSEHNDKKLWPMILM
LHGYGSDAPYHDHFLGLSERVNRHGGFLALMPNGTLNSQGRRFWNGLRCC
DFDHQGPDDVAYLTGLIAEAVKSLSVDPKRVYMLGHSNGGAMTQILGCDH
AELFAALASVTPGEIPSVCAPSHPVSVLEVCASKDPIVKLDLCTSVIENW
TLNDGCAKKPTFEKTRDYDCDLSKPVDDNKGYDQWRDHNCMLSGNETEMS
GWTCEGGSEVEFWWMRGAMHNPAFSSQWSDDVVAWLMSKTYVEA*

mRNA from alignment at scaffold_56:53105..55280+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10588 ID=mRNA_10588|Name=jgi.p|Nanoce1779_2|634112|organism=Nannochloropsis oceanica|type=mRNA|length=2176bp|location=Sequence derived from alignment at scaffold_56:53105..55280+ (Nannochloropsis oceanica)
CACCAGCTCCTCCCTCTCCTGCTACCCCTTGTGCAACAGTTGTACGCGGC
GTTTGTGTCTTTGTACCTGTAGTGTGTGGTGCCGTTGCGGGTCGTATAGT
AGGTAGCTCAGACGTCATATCAAACGCGGTAGGCGATGCATGGCGGGATG
GCTGGGATCGTGCGGTGCGTTGGCAACTCAAGCCAGTCGTATGCACGCAA
AGGACCCGCAGGCGTTTGACTGGCCCGCTTGAGCCCTGTTGTACAGATTC
TTTCCTATATGTGAGAGCTTAGATTGGCATGCTGGTGGTCAGGTGTGCTG
GCGTCACTGTTTGATAGTCCATCCAACACTGGTGGAGTGTCGCCTGCCTT
CGCCTTGCCTTCAACCATAACGTTACGCGTTATACAGCCTGGGTCGTATG
GTCGCCTCGATGGGCCTTCCCCTCCTTCAAGCATAGACACTTTTAAATAG
AAACATCTATGCGGTTAACAGTTGTCGGCATTGTCGGGGGCATCTTGTTG
GACTGAACCTGCTTCGCTAACCCAAATGAGGCACGCATGGGCCTCTCTGT
ACACATGGCCGCCTATTTCTCACGGTATTGATATTTATAGCACACACAGG
CCTACATCACGCAATATACGCTTAAATCAACTTTTGCGCTTATGTGTCAT
CTGAGGTTTGCCCTACTCCCGCATGCTCCGATGCCTCTCACTTCCCCACC
ATCCCCACCAATACCACCCCAAGAAATCGGATGATGCATCAATGCGTCCT
CCTCACCACCGGCGTTCTCTTGGCTGCCGTCAGTGCCACCACTACCAGCA
TGACACATGAGTCTGAACCCCAGCACCAGAGCCTCCGTGGTGTCCGTCGT
GCCCTCCAATGGGGATGGCCCTCCATTTTCCCTGATATTATTGAGGAGGG
GGAGGCCGAGATCGAGAGTGGCGTGACGGACGTGCCGCTCAATAAAATCA
TGGGAGAGCAGGTCAAGGCAGAAAGTGGAGGGGCAATATTGCTAGAGGGG
AAATCCCGAGAAGGTGTGTGGGTGTTAGCGGATACGATGGTAAAGGAGGA
AGAGCACAACATAAACATTCCACGGACGGCGATGCTGGGTGGAGAGCGAC
CGGCCAAGGTGGTGCTACCCGACAACTACCCCCAGAAGAGCGAGCACAAT
GATAAGAAGCTGTGGCCTATGATTTTAATGCTCCGTAAGTCGCCAATTGC
CGAGAGTGTGAAAGATCGGACCTCCTCACCCAGTATTTAACTCTATGTCC
ACAACACACACACTGCTCCCGCCCATTCTCCTACATAGACGGTTACGGTT
CTGACGCGCCTTACCATGACCACTTCTTGGGTCTGAGTGAACGGGTGAAT
CGGCACGGTGGGTTTCTGGCGCTGATGCCGAATGGGACGCTCAACAGCCA
AGGCCGCCGATTTTGGAATGGACTACGTTGCTGTGATTTCGATCACCAGG
GGCCTGATGACGTAGCTTACTTGACCGGGCTGATTGCTGAGGCAGTTAAG
TCATTGAGTGTTGATCCCAAACGCGTGTACATGCTAGGGCATTCGAACGG
AGGGGCGATGACTCAAATCCTGGGTTGTGACCACGCTGAGCTCTTTGCGG
CCTTGGCCAGCGTGACGCCCGGAGAAATTCCGAGCGTGTGTGCACCATCG
CACCCGGTCTCTGTGCTGGAGGTGTGCGCTAGCAAGGATCCGATTGTGAA
GCTGGACTTGTGTACAAGTGTTATCGAGAATTGGACTTTAAACGATGGAT
GTGCCAAGAAGCCGACGTTTGAGAAGACGAGGGACTACGACTGTGACTTG
TCTAAGCCGGTGGATGATAATAAAGGGTATGACCAGTGGAGGGATCATAA
TTGCATGTTGTCTGGGAATGAGACGGAGATGAGTGGGTGGACGTGTGAAG
GGGGGAGCGAGGTAGAGTTCTGGTGGATGCGGGGGGCGATGCATAATCCG
GCCTTCTCGAGCCAGTGGTCGGATGACGTGGTGGCATGGTTGATGAGTAA
GACTTACGTTGAGGCTTGAGTGCTAAGGGTCCGTTAAGGGGGAGTAAAGG
GAGGAGATGGGGTATGGGAGGTTGTTTTGGGAAAGAGAAGTGGTGTTGTG
AGCATACGCATTTTCCGGTATTTGTGGCAGAGAATGAATGGGTGCGATGG
AGTTGAGAGAATGACAAGAAAGAGGG

Coding sequence (CDS) from alignment at scaffold_56:53105..55280+

>mRNA_10588 ID=mRNA_10588|Name=jgi.p|Nanoce1779_2|634112|organism=Nannochloropsis oceanica|type=CDS|length=2370bp|location=Sequence derived from alignment at scaffold_56:53105..55280+ (Nannochloropsis oceanica)
ATGATGCATCAATGCGTCCTCCTCACCACCGGCGTTCTCTTGGCTGCCGT
CAGTGCCACCACTACCAGCATGACACATGAGTCTGAACCCCAGCACCAGA
GCCTCCGTGGTGTCCGTCGTGCCCTCCAATGGGGATGGCCCTCCATTTTC
CCTGATATTATTGAGGAGGGGGAGGCCGAGATCGAGAGTGGCGTGACGGA
CGTGCCGCTCAATAAAATCATGGGAGAGCAGGTCAAGGCAGAAAGTGGAG
GGGCAATATTGCTAGAGGGGAAATCCCGAGAAGGTGTGTGGGTGTTAGCG
GATACGATGGTAAAGGAGGAAGAGCACAACATAAACATTCCACGGACGGC
GATGCTGGGTGGAGAGCGACCGGCCAAGGTGGTGCTACCCGACAACTACC
CCCAGAAGAGCGAGCACAATGATAAGAAGCTGTGGCCTATGATTTTAATG
CTCCACGGTTACGGTTCTGACGCGCCTTACCATGACCACTTCTTGGGTCT
GAGTGAACGGGTGAATCGGCACGGTGGGTTTCTGGCGCTGATGCCGAATG
GGACGCTCAACAGCCAAGGCCGCCGATTTTGGAATGGACTACGTTGCTGT
GATTTCGATCACCAGGGGCCTGATGACGTAGCTTACTTGACCGGGCTGAT
TGCTGAGGCAGTTAAGTCATTGAGTGTTGATCCCAAACGCGTGTACATGC
TAGGGCATTCGAACGGAGGGGCGATGACTCAAATCCTGGGTTGTGACCAC
GCTGAGCTCTTTGCGGCCTTGGCCAGCGTGACGCCCGGAGAAATTCCGAG
CGTGTGTGCACCATCGCACCCGGTCTCTGTGCTGGAGGTGTGCGCTAGCA
AGGATCCGATTGTGAAGCTGGACTTGTGTACAAGTGTTATCGAGAATTGG
ACTTTAAACGATGGATGTGCCAAGAAGCCGACGTTTGAGAAGACGAGGGA
CTACGACTGTGACTTGTCTAAGCCGGTGGATGATAATAAAGGGTATGACC
AGTGGAGGGATCATAATTGCATGTTGTCTGGGAATGAGACGGAGATGAGT
GGGTGGACGTGTGAAGGGGGGAGCGAGGTAGAGTTCTGGTGGATGCGGGG
GGCGATGCATAATCCGGCCTTCTCGAGCCAGTGGTCGGATGACGTGGTGG
CATGGTTGATGAGTAAGACTTACGTTGAGGCTTGAATGATGCATCAATGC
GTCCTCCTCACCACCGGCGTTCTCTTGGCTGCCGTCAGTGCCACCACTAC
CAGCATGACACATGAGTCTGAACCCCAGCACCAGAGCCTCCGTGGTGTCC
GTCGTGCCCTCCAATGGGGATGGCCCTCCATTTTCCCTGATATTATTGAG
GAGGGGGAGGCCGAGATCGAGAGTGGCGTGACGGACGTGCCGCTCAATAA
AATCATGGGAGAGCAGGTCAAGGCAGAAAGTGGAGGGGCAATATTGCTAG
AGGGGAAATCCCGAGAAGGTGTGTGGGTGTTAGCGGATACGATGGTAAAG
GAGGAAGAGCACAACATAAACATTCCACGGACGGCGATGCTGGGTGGAGA
GCGACCGGCCAAGGTGGTGCTACCCGACAACTACCCCCAGAAGAGCGAGC
ACAATGATAAGAAGCTGTGGCCTATGATTTTAATGCTCCACGGTTACGGT
TCTGACGCGCCTTACCATGACCACTTCTTGGGTCTGAGTGAACGGGTGAA
TCGGCACGGTGGGTTTCTGGCGCTGATGCCGAATGGGACGCTCAACAGCC
AAGGCCGCCGATTTTGGAATGGACTACGTTGCTGTGATTTCGATCACCAG
GGGCCTGATGACGTAGCTTACTTGACCGGGCTGATTGCTGAGGCAGTTAA
GTCATTGAGTGTTGATCCCAAACGCGTGTACATGCTAGGGCATTCGAACG
GAGGGGCGATGACTCAAATCCTGGGTTGTGACCACGCTGAGCTCTTTGCG
GCCTTGGCCAGCGTGACGCCCGGAGAAATTCCGAGCGTGTGTGCACCATC
GCACCCGGTCTCTGTGCTGGAGGTGTGCGCTAGCAAGGATCCGATTGTGA
AGCTGGACTTGTGTACAAGTGTTATCGAGAATTGGACTTTAAACGATGGA
TGTGCCAAGAAGCCGACGTTTGAGAAGACGAGGGACTACGACTGTGACTT
GTCTAAGCCGGTGGATGATAATAAAGGGTATGACCAGTGGAGGGATCATA
ATTGCATGTTGTCTGGGAATGAGACGGAGATGAGTGGGTGGACGTGTGAA
GGGGGGAGCGAGGTAGAGTTCTGGTGGATGCGGGGGGCGATGCATAATCC
GGCCTTCTCGAGCCAGTGGTCGGATGACGTGGTGGCATGGTTGATGAGTA
AGACTTACGTTGAGGCTTGA

Synonyms

Publications