jgi.p|Nanoce1779_2|611412, mRNA_10584 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|611412
Unique Name	mRNA_10584
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1621
Alignment location	scaffold_56:37300..38920 +

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Properties


Property Name	Value
TranscriptId	611498
Track	FilteredModels2
ProteinId	611412

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_56	supercontig	scaffold_56:37300..38920 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611412	gene_10584	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611412	mRNA_10584-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10584	CDS_10584	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_56:37300..38920+
coding sequence from alignment at scaffold_56:37300..38920+

mRNA sequence

>mRNA_10584 ID=mRNA_10584|Name=jgi.p|Nanoce1779_2|611412|organism=Nannochloropsis oceanica|type=mRNA|length=1621bp
AGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGAAGGAGGAGCAAAGG
CAGCACCACCACGACCACAGCATGCCATGTCACGCATCTTGCTGCAAGAA
AAGCTTGATAACTTTAGAGGTGCCGTTGCATTGGCCTTGCCGTCTTTTTC
TTCTTCCGCCACGCGCACAAGCAGCAGCAGTGCCAGCAGCAGCAGCGGCG
GCACCAACGTCACCACGAGCTTGAACGAAGACGAGAAAACTGCCATTTTA
CGCATTCTTTCCTCGCATGCAAACAAAGAAATGATCGCAACCTCCTCTAC
TGCCACCCCCTCCGAGGAAGAGAAGCACAAGGACCGCTTGCGCCTTGATC
CAGCTACAGCCCAGCTCTGGGCGATGGGGAAAGAGTTTGCTCGTGGACAA
ACAGTGGGAGACCGGCTAGGAGGCAGCAAGAACGAAAAGACTAAGGTGGT
GGTCAAATTGAACGGGCCAGGCGAAGGTCCTCCTGTGAGAGAGCCGGTGG
TGAGGGAGGAGGAACGACAGGCGATGCTGGCGCATTACTTCAAAAGGCAA
GAGGAGTTGAAAAAGCTTGCAGAGGCGGACGATGATGACTACATGCGTGC
AGGCTGGGCGGATGGGAAGCAGCTGCAGCGGGGATTGCGAGGGGTGGGAA
ACGTCAAGGCGCCGGGATTAGGAGGATTGGGGTAGGACATGGAAAAGGAA
GGGGAGAGAGAGAGCGTGATATAGATCGAATAAAAATCCATAAAGCAATG
TTACGAAGAAGCGTTAAAAGTCGCTTTATCTCTTTGAGTTTTTTGGTGTA
TGTACTTCTTTTGTTGCGCGAGTCGAGCCTTTGGCTTTGGAGTGGTGTAT
GCTTCAGATCACGTGCAATTCCGTAACAGTGAGGAAGTACCTGGCATACA
AGAGAATCTCATTACCAAAACTGCTTCGTCGCCTGAGCAATATGCTTTTT
GCATCTTAACATCATGTCTTGCGTGCCTGCACCAGGGGAAGTGAGAAAAA
AGACGTACTGCAATGCCTCAATTAATACAACACTCATATGTACGATGTAC
TCCTCGGACGACGCATCGAGGGCTTTGCGCTAACGCTCTTACATCGCTAA
CCACTTCATTGCCCTTGAGCGAAGAGTCGGAAAAAAAAGGGTGGTCAGCA
ATAGGCACGCGTACGAGAGGACAGGGCGGACAGTCTTCGTCGCTCTTAGC
TTGTAAAGTGCCCTGCCTTGGATTTTCGTTGCCGCAAACAAGCACGCACC
AGACTATACACCTCTATCTCGATGAGAATTTATACTCATAATTTTTTGGT
GCGACGGTGCATGTGCTTTTGGTCACTTTGGGTGGGGCGAGAGAGGGAAG
AACCGTTTCAAGCCCTTGACATGACCTCAAGTTGATTTAGAAGGCGAACG
CCTGGAAACACATACGCACATGCGCTTTGAGAGGAGTCGATTGGAGCCTC
TTTAACCTGGTTGGATAGACCGCATCTTCTTCCCATCCCATGGCCCTCTG
CAATTAAATTAAAGTGCTTTTACCTTGCGTTGAAGCAGAGGGTTTCGACC
AATCACAGCCCGCCTCTGGGAAACGGCGGGCATCTGCTTTCCGCCGACCT
CCTCCTTTGAAAGCAGATGGC

protein sequence of jgi.p|Nanoce1779_2|611412

>mRNA_10584-protein ID=mRNA_10584-protein|Name=jgi.p|Nanoce1779_2|611412|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MSRILLQEKLDNFRGAVALALPSFSSSATRTSSSSASSSSGGTNVTTSLN
EDEKTAILRILSSHANKEMIATSSTATPSEEEKHKDRLRLDPATAQLWAM
GKEFARGQTVGDRLGGSKNEKTKVVVKLNGPGEGPPVREPVVREEERQAM
LAHYFKRQEELKKLAEADDDDYMRAGWADGKQLQRGLRGVGNVKAPGLGG
LG*

mRNA from alignment at scaffold_56:37300..38920+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10584 ID=mRNA_10584|Name=jgi.p|Nanoce1779_2|611412|organism=Nannochloropsis oceanica|type=mRNA|length=1621bp|location=Sequence derived from alignment at scaffold_56:37300..38920+ (Nannochloropsis oceanica)
AGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGAAGGAGGAGCAAAGG
CAGCACCACCACGACCACAGCATGCCATGTCACGCATCTTGCTGCAAGAA
AAGCTTGATAACTTTAGAGGTGCCGTTGCATTGGCCTTGCCGTCTTTTTC
TTCTTCCGCCACGCGCACAAGCAGCAGCAGTGCCAGCAGCAGCAGCGGCG
GCACCAACGTCACCACGAGCTTGAACGAAGACGAGAAAACTGCCATTTTA
CGCATTCTTTCCTCGCATGCAAACAAAGAAATGATCGCAACCTCCTCTAC
TGCCACCCCCTCCGAGGAAGAGAAGCACAAGGACCGCTTGCGCCTTGATC
CAGCTACAGCCCAGCTCTGGGCGATGGGGAAAGAGTTTGCTCGTGGACAA
ACAGTGGGAGACCGGCTAGGAGGCAGCAAGAACGAAAAGACTAAGGTGGT
GGTCAAATTGAACGGGCCAGGCGAAGGTCCTCCTGTGAGAGAGCCGGTGG
TGAGGGAGGAGGAACGACAGGCGATGCTGGCGCATTACTTCAAAAGGCAA
GAGGAGTTGAAAAAGCTTGCAGAGGCGGACGATGATGACTACATGCGTGC
AGGCTGGGCGGATGGGAAGCAGCTGCAGCGGGGATTGCGAGGGGTGGGAA
ACGTCAAGGCGCCGGGATTAGGAGGATTGGGGTAGGACATGGAAAAGGAA
GGGGAGAGAGAGAGCGTGATATAGATCGAATAAAAATCCATAAAGCAATG
TTACGAAGAAGCGTTAAAAGTCGCTTTATCTCTTTGAGTTTTTTGGTGTA
TGTACTTCTTTTGTTGCGCGAGTCGAGCCTTTGGCTTTGGAGTGGTGTAT
GCTTCAGATCACGTGCAATTCCGTAACAGTGAGGAAGTACCTGGCATACA
AGAGAATCTCATTACCAAAACTGCTTCGTCGCCTGAGCAATATGCTTTTT
GCATCTTAACATCATGTCTTGCGTGCCTGCACCAGGGGAAGTGAGAAAAA
AGACGTACTGCAATGCCTCAATTAATACAACACTCATATGTACGATGTAC
TCCTCGGACGACGCATCGAGGGCTTTGCGCTAACGCTCTTACATCGCTAA
CCACTTCATTGCCCTTGAGCGAAGAGTCGGAAAAAAAAGGGTGGTCAGCA
ATAGGCACGCGTACGAGAGGACAGGGCGGACAGTCTTCGTCGCTCTTAGC
TTGTAAAGTGCCCTGCCTTGGATTTTCGTTGCCGCAAACAAGCACGCACC
AGACTATACACCTCTATCTCGATGAGAATTTATACTCATAATTTTTTGGT
GCGACGGTGCATGTGCTTTTGGTCACTTTGGGTGGGGCGAGAGAGGGAAG
AACCGTTTCAAGCCCTTGACATGACCTCAAGTTGATTTAGAAGGCGAACG
CCTGGAAACACATACGCACATGCGCTTTGAGAGGAGTCGATTGGAGCCTC
TTTAACCTGGTTGGATAGACCGCATCTTCTTCCCATCCCATGGCCCTCTG
CAATTAAATTAAAGTGCTTTTACCTTGCGTTGAAGCAGAGGGTTTCGACC
AATCACAGCCCGCCTCTGGGAAACGGCGGGCATCTGCTTTCCGCCGACCT
CCTCCTTTGAAAGCAGATGGC

Coding sequence (CDS) from alignment at scaffold_56:37300..38920+

>mRNA_10584 ID=mRNA_10584|Name=jgi.p|Nanoce1779_2|611412|organism=Nannochloropsis oceanica|type=CDS|length=609bp|location=Sequence derived from alignment at scaffold_56:37300..38920+ (Nannochloropsis oceanica)
ATGTCACGCATCTTGCTGCAAGAAAAGCTTGATAACTTTAGAGGTGCCGT
TGCATTGGCCTTGCCGTCTTTTTCTTCTTCCGCCACGCGCACAAGCAGCA
GCAGTGCCAGCAGCAGCAGCGGCGGCACCAACGTCACCACGAGCTTGAAC
GAAGACGAGAAAACTGCCATTTTACGCATTCTTTCCTCGCATGCAAACAA
AGAAATGATCGCAACCTCCTCTACTGCCACCCCCTCCGAGGAAGAGAAGC
ACAAGGACCGCTTGCGCCTTGATCCAGCTACAGCCCAGCTCTGGGCGATG
GGGAAAGAGTTTGCTCGTGGACAAACAGTGGGAGACCGGCTAGGAGGCAG
CAAGAACGAAAAGACTAAGGTGGTGGTCAAATTGAACGGGCCAGGCGAAG
GTCCTCCTGTGAGAGAGCCGGTGGTGAGGGAGGAGGAACGACAGGCGATG
CTGGCGCATTACTTCAAAAGGCAAGAGGAGTTGAAAAAGCTTGCAGAGGC
GGACGATGATGACTACATGCGTGCAGGCTGGGCGGATGGGAAGCAGCTGC
AGCGGGGATTGCGAGGGGTGGGAAACGTCAAGGCGCCGGGATTAGGAGGA
TTGGGGTAG

Synonyms

Publications