jgi.p|Nanoce1779_2|611410, mRNA_10583 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|611410
Unique Name	mRNA_10583
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2879
Alignment location	scaffold_56:33742..36620 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	611496
Track	FilteredModels2
ProteinId	611410

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_56	supercontig	scaffold_56:33742..36620 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611410	gene_10583	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611410	mRNA_10583-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10583	CDS_10583	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_56:33742..36620+
coding sequence from alignment at scaffold_56:33742..36620+

mRNA sequence

>mRNA_10583 ID=mRNA_10583|Name=jgi.p|Nanoce1779_2|611410|organism=Nannochloropsis oceanica|type=mRNA|length=2879bp
GCCCTCACCTTTTTCACACGACATGCGGTCTGAGAGGTCGAAAAATGTGT
GCCTCAAAATGTGCGCCACACGAAACAGAAAATGTGCAGAGCAGACACAT
CAAGCCGCCGCGTCAATCCTACCACCACTTACGAGTCAAAGCATAGCAAG
AGACATGAAAGAAGCCGCTCACTTTTTCTCCTTCACTTTCCTCCCCTTTC
CCCCGTCCAGCCCAAACGAAAATGGGGGAGGACGACGACCCACAAGCACT
CTTGGCCACATTTGACAAGTGTCGTCGTCGGGCAGATGGCACCGTAGATA
CCAACACCTTGGTGCATTGGCTATGTCTCGAGGTGGACGCACCCCAATTT
GTCAAGAGGCTGGAGAGTCTGGGCAAGACTAACTACACCCGGGCCGAGTT
TGAGCACCTTCTCTTGAATGGGGTCGTAAAAGGCAGCAGCGACGGCAGTA
GAACTTCGCCTGAAAGCAGAGGGATGGATAATCATACGTTTCACACAAGT
GCTGGCAGGAAGAAAAAGAAAGAGGCAAGGAAGCAGCGTCCATCTTCGCA
AGGGCGGGAACGTCTGGTGGAGGAGGAAGTTGAGTCGCCTCATGCCAAGG
AGCAACCCCCATCCAACGAAATTAATAAAACTTCGACCGAAAGTAATGCT
AAGCATAACCATCATCATCATCACCACCAGGGCCAGGGGGACATCGATTC
CAAGACCAGAAAGGAAATGCACATCACCACCACCCCGCCACGATCCCTTT
CTGCCAGCCCAGAACGAACCTTTTCCACCCATTATTCGTTCTCGCCAAAT
CGTTCGAGGCATCAGCGTGTCATGAAGCAAGGTAGCAGCGCGCGTTTGGT
CAGGCGTCAGCAGCAGCAACAGCATGCGTCCTCCAAATGGAGCGTAGATC
AAGAGCAGGATGAGTACCCATATCACAGCAGCAGCGGCCTGAGCGAGTAC
AGCAGCAGCAGCAGCGGCAGCAGCGGCAGCAGCGAGGACGAAAAGGGAGC
AAACGCCGGATACAGGCACCATCGACACGATTATTTCCACCGACACCATC
GCAAGCCCTCCTCAAATACAAGCCGCCGTCGGAACGCCCGTTCCAAGCAC
TGGAGCCCGGGCCCTTCTCCCAACATCAGCCATTTCTTGAGTCCACTACT
CACAGAAGGGATTCGGGATTTCTTTCGCCTAGGCGTTGGCAATGCCAGAA
GCGGTACACACAGTAGCAGCAGCAGCCGCAACACCAGGCGCGGGAATCGT
CGTGGCGCCGCGGGACGAGATCAGGAGAGTGACGTTGAGGCGGCTCAAGA
CGGACGAACGAAAGCCACGGTCATAAGTCGAAAAGATCATGGATCTTGGA
CCGAGGCGTTGGCGCAGTCTAGATTGCTAAATGGAAAGAAGGGGAAAAGG
AACGGAGGGGGCCCCGGAAGCTCATCATCCCACAAGACCAATCGTCGCGG
CCACAGTCGCAGCCACTGGCACCGTGATCACCGCAGCACATCTCCACCAC
CACATCCCTCATCCACAGGAAATTACGTCTCGCATGACCAGCAGCAGGAG
CGGCAGCCAGTTTCGTCCATTCACCACACGTCCTTTGGCTTTCCACAGAC
AACCACAGGCACAAACCCAAGTCGCAGTTCTCTCTCCTATCGCCGAGAAC
AGCGTATAAATCACCGCGAAGAAGAAAAACCAAATGGAGGCTTCAAGCCA
ACCATTACCAGGAGCTGTACTTTGACCAACCCCGCCCTGGACTCTGGCTC
TCCCACTGCCTTTGACCAAAGCTTGCCTTGGGACGGGAAGCTGGTCCCGC
GAGACAGCGAAGCCGCTTCCCTGATCACAGGTCGCACCTACTGGCGTAGA
AACAAAGAGGACAGTGATAGGCAAGCTTTGCAGTCGAGGACGGTGGACCC
GGCCCTCCGCGCTGTGATGGATGGCCTCGACCACCTCTCTGGCACCCCCC
GCCCCCAGCTCCAAGGGCTCCTGCTGACCGCACAAGACAATGCCGCCAGC
GCTTTGGCTAACAAAAATCAGGCGCAGAACCGTGTTCTTCTTGAAGGCAA
TGTCGAATTGTGGTTACCGTCCCGTTTTTTGGGTAGTCTCTATAAATCCT
GGGTGCCCTTTCACCTTGTCCTTTATGCCGGCACCAAGGAGATTCGGCTC
TACCAGTCCTCCATCCCCTCCGCCTGGGGCATCATCCCCTTGCACGAGAA
GGGCACTTTAGAGCTGCGACTGTTGGAAAAGATCGAGTGTCCGACCGACC
CGCAGTGGGGTGGTCGGCGCTTTGACTTGGTTGTGCGAGCCTCATCGAGT
GCTGCCGTCGATGCCAAGTATCCCGGCTTGGGAGTCTACCCTGGGGACGA
AAAGAGGGCCACGCACACTGCGCGGTACAATTTCCGGTCACAAACAGCCC
AAAATCGACTGTTATGGGTGTCTCTGATCACAGCCGTCTTGGACTCGTGC
AGTGCGCCGCCGTCGTCTTCCTCTCGAGAGAGGACTTTGACGCTCGCTCC
CCATGACCCTGCCCCAATATCGTTTTCATTACCCTGCCGAACATCCTCCG
ACGAAGTCACCTTACCGTCTCCGCCTGTATCCTCGACTGCAGCAGCCATG
TCGACGACCTCCTCGGCGGCATTGGCGCGGGGCGGCGTGGGCCTGGGTGG
GAGCGGCGACTTATTGAACTCGCCCAGCAGGACGCCTTTGCGGGCGACTT
ACTCTTCCCTTTCCGCAACAGCCTCGAGAAGCCTGCCAAGCGACAATGTC
AAGGCCCTGGCCACACACCACATATCCTCAACATCCTCTCCTGCCTCACC
ACAACGAGGCGGCGCGGGGCAGGCCCCGGTGGGAGGGCGGTGATAATGAG
GGGGGTTTCCTGGCGAGAAGAGGGCTATT

protein sequence of jgi.p|Nanoce1779_2|611410

>mRNA_10583-protein ID=mRNA_10583-protein|Name=jgi.p|Nanoce1779_2|611410|organism=Nannochloropsis oceanica|type=polypeptide|length=874bp
MGEDDDPQALLATFDKCRRRADGTVDTNTLVHWLCLEVDAPQFVKRLESL
GKTNYTRAEFEHLLLNGVVKGSSDGSRTSPESRGMDNHTFHTSAGRKKKK
EARKQRPSSQGRERLVEEEVESPHAKEQPPSNEINKTSTESNAKHNHHHH
HHQGQGDIDSKTRKEMHITTTPPRSLSASPERTFSTHYSFSPNRSRHQRV
MKQGSSARLVRRQQQQQHASSKWSVDQEQDEYPYHSSSGLSEYSSSSSGS
SGSSEDEKGANAGYRHHRHDYFHRHHRKPSSNTSRRRNARSKHWSPGPSP
NISHFLSPLLTEGIRDFFRLGVGNARSGTHSSSSSRNTRRGNRRGAAGRD
QESDVEAAQDGRTKATVISRKDHGSWTEALAQSRLLNGKKGKRNGGGPGS
SSSHKTNRRGHSRSHWHRDHRSTSPPPHPSSTGNYVSHDQQQERQPVSSI
HHTSFGFPQTTTGTNPSRSSLSYRREQRINHREEEKPNGGFKPTITRSCT
LTNPALDSGSPTAFDQSLPWDGKLVPRDSEAASLITGRTYWRRNKEDSDR
QALQSRTVDPALRAVMDGLDHLSGTPRPQLQGLLLTAQDNAASALANKNQ
AQNRVLLEGNVELWLPSRFLGSLYKSWVPFHLVLYAGTKEIRLYQSSIPS
AWGIIPLHEKGTLELRLLEKIECPTDPQWGGRRFDLVVRASSSAAVDAKY
PGLGVYPGDEKRATHTARYNFRSQTAQNRLLWVSLITAVLDSCSAPPSSS
SRERTLTLAPHDPAPISFSLPCRTSSDEVTLPSPPVSSTAAAMSTTSSAA
LARGGVGLGGSGDLLNSPSRTPLRATYSSLSATASRSLPSDNVKALATHH
ISSTSSPASPQRGGAGQAPVGGR*

mRNA from alignment at scaffold_56:33742..36620+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10583 ID=mRNA_10583|Name=jgi.p|Nanoce1779_2|611410|organism=Nannochloropsis oceanica|type=mRNA|length=2879bp|location=Sequence derived from alignment at scaffold_56:33742..36620+ (Nannochloropsis oceanica)
GCCCTCACCTTTTTCACACGACATGCGGTCTGAGAGGTCGAAAAATGTGT
GCCTCAAAATGTGCGCCACACGAAACAGAAAATGTGCAGAGCAGACACAT
CAAGCCGCCGCGTCAATCCTACCACCACTTACGAGTCAAAGCATAGCAAG
AGACATGAAAGAAGCCGCTCACTTTTTCTCCTTCACTTTCCTCCCCTTTC
CCCCGTCCAGCCCAAACGAAAATGGGGGAGGACGACGACCCACAAGCACT
CTTGGCCACATTTGACAAGTGTCGTCGTCGGGCAGATGGCACCGTAGATA
CCAACACCTTGGTGCATTGGCTATGTCTCGAGGTGGACGCACCCCAATTT
GTCAAGAGGCTGGAGAGTCTGGGCAAGACTAACTACACCCGGGCCGAGTT
TGAGCACCTTCTCTTGAATGGGGTCGTAAAAGGCAGCAGCGACGGCAGTA
GAACTTCGCCTGAAAGCAGAGGGATGGATAATCATACGTTTCACACAAGT
GCTGGCAGGAAGAAAAAGAAAGAGGCAAGGAAGCAGCGTCCATCTTCGCA
AGGGCGGGAACGTCTGGTGGAGGAGGAAGTTGAGTCGCCTCATGCCAAGG
AGCAACCCCCATCCAACGAAATTAATAAAACTTCGACCGAAAGTAATGCT
AAGCATAACCATCATCATCATCACCACCAGGGCCAGGGGGACATCGATTC
CAAGACCAGAAAGGAAATGCACATCACCACCACCCCGCCACGATCCCTTT
CTGCCAGCCCAGAACGAACCTTTTCCACCCATTATTCGTTCTCGCCAAAT
CGTTCGAGGCATCAGCGTGTCATGAAGCAAGGTAGCAGCGCGCGTTTGGT
CAGGCGTCAGCAGCAGCAACAGCATGCGTCCTCCAAATGGAGCGTAGATC
AAGAGCAGGATGAGTACCCATATCACAGCAGCAGCGGCCTGAGCGAGTAC
AGCAGCAGCAGCAGCGGCAGCAGCGGCAGCAGCGAGGACGAAAAGGGAGC
AAACGCCGGATACAGGCACCATCGACACGATTATTTCCACCGACACCATC
GCAAGCCCTCCTCAAATACAAGCCGCCGTCGGAACGCCCGTTCCAAGCAC
TGGAGCCCGGGCCCTTCTCCCAACATCAGCCATTTCTTGAGTCCACTACT
CACAGAAGGGATTCGGGATTTCTTTCGCCTAGGCGTTGGCAATGCCAGAA
GCGGTACACACAGTAGCAGCAGCAGCCGCAACACCAGGCGCGGGAATCGT
CGTGGCGCCGCGGGACGAGATCAGGAGAGTGACGTTGAGGCGGCTCAAGA
CGGACGAACGAAAGCCACGGTCATAAGTCGAAAAGATCATGGATCTTGGA
CCGAGGCGTTGGCGCAGTCTAGATTGCTAAATGGAAAGAAGGGGAAAAGG
AACGGAGGGGGCCCCGGAAGCTCATCATCCCACAAGACCAATCGTCGCGG
CCACAGTCGCAGCCACTGGCACCGTGATCACCGCAGCACATCTCCACCAC
CACATCCCTCATCCACAGGAAATTACGTCTCGCATGACCAGCAGCAGGAG
CGGCAGCCAGTTTCGTCCATTCACCACACGTCCTTTGGCTTTCCACAGAC
AACCACAGGCACAAACCCAAGTCGCAGTTCTCTCTCCTATCGCCGAGAAC
AGCGTATAAATCACCGCGAAGAAGAAAAACCAAATGGAGGCTTCAAGCCA
ACCATTACCAGGAGCTGTACTTTGACCAACCCCGCCCTGGACTCTGGCTC
TCCCACTGCCTTTGACCAAAGCTTGCCTTGGGACGGGAAGCTGGTCCCGC
GAGACAGCGAAGCCGCTTCCCTGATCACAGGTCGCACCTACTGGCGTAGA
AACAAAGAGGACAGTGATAGGCAAGCTTTGCAGTCGAGGACGGTGGACCC
GGCCCTCCGCGCTGTGATGGATGGCCTCGACCACCTCTCTGGCACCCCCC
GCCCCCAGCTCCAAGGGCTCCTGCTGACCGCACAAGACAATGCCGCCAGC
GCTTTGGCTAACAAAAATCAGGCGCAGAACCGTGTTCTTCTTGAAGGCAA
TGTCGAATTGTGGTTACCGTCCCGTTTTTTGGGTAGTCTCTATAAATCCT
GGGTGCCCTTTCACCTTGTCCTTTATGCCGGCACCAAGGAGATTCGGCTC
TACCAGTCCTCCATCCCCTCCGCCTGGGGCATCATCCCCTTGCACGAGAA
GGGCACTTTAGAGCTGCGACTGTTGGAAAAGATCGAGTGTCCGACCGACC
CGCAGTGGGGTGGTCGGCGCTTTGACTTGGTTGTGCGAGCCTCATCGAGT
GCTGCCGTCGATGCCAAGTATCCCGGCTTGGGAGTCTACCCTGGGGACGA
AAAGAGGGCCACGCACACTGCGCGGTACAATTTCCGGTCACAAACAGCCC
AAAATCGACTGTTATGGGTGTCTCTGATCACAGCCGTCTTGGACTCGTGC
AGTGCGCCGCCGTCGTCTTCCTCTCGAGAGAGGACTTTGACGCTCGCTCC
CCATGACCCTGCCCCAATATCGTTTTCATTACCCTGCCGAACATCCTCCG
ACGAAGTCACCTTACCGTCTCCGCCTGTATCCTCGACTGCAGCAGCCATG
TCGACGACCTCCTCGGCGGCATTGGCGCGGGGCGGCGTGGGCCTGGGTGG
GAGCGGCGACTTATTGAACTCGCCCAGCAGGACGCCTTTGCGGGCGACTT
ACTCTTCCCTTTCCGCAACAGCCTCGAGAAGCCTGCCAAGCGACAATGTC
AAGGCCCTGGCCACACACCACATATCCTCAACATCCTCTCCTGCCTCACC
ACAACGAGGCGGCGCGGGGCAGGCCCCGGTGGGAGGGCGGTGATAATGAG
GGGGGTTTCCTGGCGAGAAGAGGGCTATT

Coding sequence (CDS) from alignment at scaffold_56:33742..36620+

>mRNA_10583 ID=mRNA_10583|Name=jgi.p|Nanoce1779_2|611410|organism=Nannochloropsis oceanica|type=CDS|length=2622bp|location=Sequence derived from alignment at scaffold_56:33742..36620+ (Nannochloropsis oceanica)
ATGGGGGAGGACGACGACCCACAAGCACTCTTGGCCACATTTGACAAGTG
TCGTCGTCGGGCAGATGGCACCGTAGATACCAACACCTTGGTGCATTGGC
TATGTCTCGAGGTGGACGCACCCCAATTTGTCAAGAGGCTGGAGAGTCTG
GGCAAGACTAACTACACCCGGGCCGAGTTTGAGCACCTTCTCTTGAATGG
GGTCGTAAAAGGCAGCAGCGACGGCAGTAGAACTTCGCCTGAAAGCAGAG
GGATGGATAATCATACGTTTCACACAAGTGCTGGCAGGAAGAAAAAGAAA
GAGGCAAGGAAGCAGCGTCCATCTTCGCAAGGGCGGGAACGTCTGGTGGA
GGAGGAAGTTGAGTCGCCTCATGCCAAGGAGCAACCCCCATCCAACGAAA
TTAATAAAACTTCGACCGAAAGTAATGCTAAGCATAACCATCATCATCAT
CACCACCAGGGCCAGGGGGACATCGATTCCAAGACCAGAAAGGAAATGCA
CATCACCACCACCCCGCCACGATCCCTTTCTGCCAGCCCAGAACGAACCT
TTTCCACCCATTATTCGTTCTCGCCAAATCGTTCGAGGCATCAGCGTGTC
ATGAAGCAAGGTAGCAGCGCGCGTTTGGTCAGGCGTCAGCAGCAGCAACA
GCATGCGTCCTCCAAATGGAGCGTAGATCAAGAGCAGGATGAGTACCCAT
ATCACAGCAGCAGCGGCCTGAGCGAGTACAGCAGCAGCAGCAGCGGCAGC
AGCGGCAGCAGCGAGGACGAAAAGGGAGCAAACGCCGGATACAGGCACCA
TCGACACGATTATTTCCACCGACACCATCGCAAGCCCTCCTCAAATACAA
GCCGCCGTCGGAACGCCCGTTCCAAGCACTGGAGCCCGGGCCCTTCTCCC
AACATCAGCCATTTCTTGAGTCCACTACTCACAGAAGGGATTCGGGATTT
CTTTCGCCTAGGCGTTGGCAATGCCAGAAGCGGTACACACAGTAGCAGCA
GCAGCCGCAACACCAGGCGCGGGAATCGTCGTGGCGCCGCGGGACGAGAT
CAGGAGAGTGACGTTGAGGCGGCTCAAGACGGACGAACGAAAGCCACGGT
CATAAGTCGAAAAGATCATGGATCTTGGACCGAGGCGTTGGCGCAGTCTA
GATTGCTAAATGGAAAGAAGGGGAAAAGGAACGGAGGGGGCCCCGGAAGC
TCATCATCCCACAAGACCAATCGTCGCGGCCACAGTCGCAGCCACTGGCA
CCGTGATCACCGCAGCACATCTCCACCACCACATCCCTCATCCACAGGAA
ATTACGTCTCGCATGACCAGCAGCAGGAGCGGCAGCCAGTTTCGTCCATT
CACCACACGTCCTTTGGCTTTCCACAGACAACCACAGGCACAAACCCAAG
TCGCAGTTCTCTCTCCTATCGCCGAGAACAGCGTATAAATCACCGCGAAG
AAGAAAAACCAAATGGAGGCTTCAAGCCAACCATTACCAGGAGCTGTACT
TTGACCAACCCCGCCCTGGACTCTGGCTCTCCCACTGCCTTTGACCAAAG
CTTGCCTTGGGACGGGAAGCTGGTCCCGCGAGACAGCGAAGCCGCTTCCC
TGATCACAGGTCGCACCTACTGGCGTAGAAACAAAGAGGACAGTGATAGG
CAAGCTTTGCAGTCGAGGACGGTGGACCCGGCCCTCCGCGCTGTGATGGA
TGGCCTCGACCACCTCTCTGGCACCCCCCGCCCCCAGCTCCAAGGGCTCC
TGCTGACCGCACAAGACAATGCCGCCAGCGCTTTGGCTAACAAAAATCAG
GCGCAGAACCGTGTTCTTCTTGAAGGCAATGTCGAATTGTGGTTACCGTC
CCGTTTTTTGGGTAGTCTCTATAAATCCTGGGTGCCCTTTCACCTTGTCC
TTTATGCCGGCACCAAGGAGATTCGGCTCTACCAGTCCTCCATCCCCTCC
GCCTGGGGCATCATCCCCTTGCACGAGAAGGGCACTTTAGAGCTGCGACT
GTTGGAAAAGATCGAGTGTCCGACCGACCCGCAGTGGGGTGGTCGGCGCT
TTGACTTGGTTGTGCGAGCCTCATCGAGTGCTGCCGTCGATGCCAAGTAT
CCCGGCTTGGGAGTCTACCCTGGGGACGAAAAGAGGGCCACGCACACTGC
GCGGTACAATTTCCGGTCACAAACAGCCCAAAATCGACTGTTATGGGTGT
CTCTGATCACAGCCGTCTTGGACTCGTGCAGTGCGCCGCCGTCGTCTTCC
TCTCGAGAGAGGACTTTGACGCTCGCTCCCCATGACCCTGCCCCAATATC
GTTTTCATTACCCTGCCGAACATCCTCCGACGAAGTCACCTTACCGTCTC
CGCCTGTATCCTCGACTGCAGCAGCCATGTCGACGACCTCCTCGGCGGCA
TTGGCGCGGGGCGGCGTGGGCCTGGGTGGGAGCGGCGACTTATTGAACTC
GCCCAGCAGGACGCCTTTGCGGGCGACTTACTCTTCCCTTTCCGCAACAG
CCTCGAGAAGCCTGCCAAGCGACAATGTCAAGGCCCTGGCCACACACCAC
ATATCCTCAACATCCTCTCCTGCCTCACCACAACGAGGCGGCGCGGGGCA
GGCCCCGGTGGGAGGGCGGTGA

Synonyms

Publications