jgi.p|Nanoce1779_2|352256, mRNA_10581 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|352256
Unique NamemRNA_10581
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length856
Alignment locationscaffold_56:29007..30004 -

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Properties
Property NameValue
TranscriptId352342
TrackFilteredModels2
ProteinId352256
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:29007..30004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|352256gene_10581Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|352256mRNA_10581-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10581CDS_10581Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10581 ID=mRNA_10581|Name=jgi.p|Nanoce1779_2|352256|organism=Nannochloropsis oceanica|type=mRNA|length=856bp
CCGACCCTCCCCTGACTCCTTCCCCGCCGTCCGTGCTGTCCTTCCCAGGT
GCCATTCCCTCAGGTTTCCTCCTCATTTCGGCCCCGGTGCTGTACCTCGT
CACGTTGCGAAACAAACGCGTGCGTAACGGTGAGTACACTTAAGAGAAAC
CCAGAAAGCAGACGTCGTCGTTGAGGTGGAAGGGGAGGGAAGAGGCAGAT
GTGTGATGGATGTCAGCTTTCGCTTCCAACATGGTCTCCTCCTCGCTTCC
TCCCTCCTTCCAGGTTACAAATACGATCTCCTCGACATTGCTCGTCATGC
AGCATCCCTCCTTCTTGCCCTCGTGCCCCTCCTATTACTCATCATTCAAA
ATGCCCGGGCATCCGAAGGGGCGGAAGTGAAGGTGAGAAGCGAGGGAGGA
AGGGAGGGAGGGAAGGAAGAGAGGTTGATTCCCGCCGCTTTGTGGTCACT
CCCGCATGTTCTTTTTACTCATTTCATATTTCATGTGGGCCTCAAGCACC
GGCAGCGCTACAGCGAGAGGAGTCAACGTGGTCTCCTTTTCTTCGAAGCA
CCTGAAGGCACAAGGATACTTTTACTCAACCACTCACCCTCCCTCCCTCC
CTCCCTCCCCTTCCCTTTCCTCTCCCATAGAAGGGTGCCTGGTGGACCGC
GGGCGTCACGGCGGGAGGGGCCTTGCTCTCCATCCCCCTGGCCCATATGG
AGGTGGTGCGCGGCCTGCGGGAGTCGTGGGTGTGGCACGCTTTCTGGCTG
CTGCAGCTGGTGGTGGGCATTTTCGCGGTAGTGCCGGCGGCGAACACTGC
TTACGCCCGTCAGGCCGTTCATTTGGTCGAGGCCACCGTCTTTGCTCGCG
CCATTT
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protein sequence of jgi.p|Nanoce1779_2|352256

>mRNA_10581-protein ID=mRNA_10581-protein|Name=jgi.p|Nanoce1779_2|352256|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MDVSFRFQHGLLLASSLLPGYKYDLLDIARHAASLLLALVPLLLLIIQNA
RASEGAEVKVRSEGGREGGKEERLIPAALWSLPHVLFTHFIFHVGLKHRQ
RYSERSQRGLLFFEAPEGTRILLLNHSPSLPPSLPFPFLSHRRVPGGPRA
SRREGPCSPSPWPIWRWCAACGSRGCGTLSGCCSWWWAFSR*
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mRNA from alignment at scaffold_56:29007..30004-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10581 ID=mRNA_10581|Name=jgi.p|Nanoce1779_2|352256|organism=Nannochloropsis oceanica|type=mRNA|length=998bp|location=Sequence derived from alignment at scaffold_56:29007..30004- (Nannochloropsis oceanica)
CCGACCCTCCCCTGACTCCTTCCCCGCCGTCCGTGCTGTCCTTCCCAGGT
GCCATTCCCTCAGGTTTCCTCCTCATTTCGGCCCCGGTGCTGTACCTCGT
CACGTTGCGAAACAAACGCGTGCGTAACGGTGAGTACACTTAAGAGAAAC
CCAGAAAGCAGACGTCGTCGTTGAGGTGGAAGGGGAGGGAAGAGGCAGAT
GTGTGATGGATGTCAGCTTTCGCTTCCAACATGGTCTCCTCCTCGCTTCC
TCCCTCCTTCCAGGTTACAAATACGATCTCCTCGACATTGCTCGTCATGC
AGCATCCCTCCTTCTTGCCCTCGTGCCCCTCCTATTACTCATCATTCAAA
ATGCCCGGGCATCCGAAGGGGCGGAAGTGAAGGTGAGAAGCGAGGGAGGA
AGGGAGGGAGGGAAGGAAGAGAGGTTGATTCCCGCCGCTTTGTGGTCACT
CCCGCATGTTCTTTTTACTCATTTCATATTTCATGTGGGCCTCAAGCACC
GGCAGCGCTACAGCGAGAGGAGTCAACGTGGTCTCCTTTTCTTCGAAGCA
CCTGAAGGCACAAGGATACTTTTACTCAACCACTCACCCTCCCTCCCTCC
CTCCCTCCCCTTCCCTTTCCTCTCCCATAGAAGGGTGCCTGGTGGACCGC
GGGCGTCACGGCGGGAGGGGCCTTGCTCTCCATCCCCCTGGCCCATATGG
AGGTGGTGCGCGGCCTGCGGGAGTCGTGGGTGTGGCACGCTTTCTGGCTG
CTGCAGCTGGTGGTGGGCATTTTCGCGGTAGTGCCGGCGGCGAACACTGC
TTGTGAGTAGGGGGGGAGGGAGGGAGAGGGGAGGGAGGGAGGGAGGGTCT
GGCGCACCGACTGACGGAGTGAACATACTTGAAGCTTGAAGGCTAAACCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCAGACGCCC
GTCAGGCCGTTCATTTGGTCGAGGCCACCGTCTTTGCTCGCGCCATTT
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Coding sequence (CDS) from alignment at scaffold_56:29007..30004-

>mRNA_10581 ID=mRNA_10581|Name=jgi.p|Nanoce1779_2|352256|organism=Nannochloropsis oceanica|type=CDS|length=576bp|location=Sequence derived from alignment at scaffold_56:29007..30004- (Nannochloropsis oceanica)
ATGGATGTCAGCTTTCGCTTCCAACATGGTCTCCTCCTCGCTTCCTCCCT
CCTTCCAGGTTACAAATACGATCTCCTCGACATTGCTCGTCATGCAGCAT
CCCTCCTTCTTGCCCTCGTGCCCCTCCTATTACTCATCATTCAAAATGCC
CGGGCATCCGAAGGGGCGGAAGTGAAGGTGAGAAGCGAGGGAGGAAGGGA
GGGAGGGAAGGAAGAGAGGTTGATTCCCGCCGCTTTGTGGTCACTCCCGC
ATGTTCTTTTTACTCATTTCATATTTCATGTGGGCCTCAAGCACCGGCAG
CGCTACAGCGAGAGGAGTCAACGTGGTCTCCTTTTCTTCGAAGCACCTGA
AGGCACAAGGATACTTTTACTCAACCACTCACCCTCCCTCCCTCCCTCCC
TCCCCTTCCCTTTCCTCTCCCATAGAAGGGTGCCTGGTGGACCGCGGGCG
TCACGGCGGGAGGGGCCTTGCTCTCCATCCCCCTGGCCCATATGGAGGTG
GTGCGCGGCCTGCGGGAGTCGTGGGTGTGGCACGCTTTCTGGCTGCTGCA
GCTGGTGGTGGGCATTTTCGCGGTAG
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Synonyms
Publications