jgi.p|Nanoce1779_2|352229, mRNA_10579 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|352229
Unique NamemRNA_10579
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length916
Alignment locationscaffold_56:19534..20996 -

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Properties
Property NameValue
TranscriptId352315
TrackFilteredModels2
ProteinId352229
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:19534..20996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|352229gene_10579Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|352229mRNA_10579-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10579CDS_10579Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10579 ID=mRNA_10579|Name=jgi.p|Nanoce1779_2|352229|organism=Nannochloropsis oceanica|type=mRNA|length=916bp
TTATCTTTACCCCTCCCTCTCCCTCACTTCCTCCCCCAGGACCCCGTTCT
CTTCACGGGCACAGTGCGCTTTAACCTCGACCCCTTCGACCAGTACTCGG
ATCGCGACGTTTGGACGGCCTTGGAGAGGGCTCATTTGGCGGCGCAGGTC
CGCCGGTTGCCGCAGGGGCTGCTGGCCGAGGTAGAGGAGGGGGGGAAGAA
CTTCAGTCTGGGCGAGCGGCAATTGCTGTGCATGGCCCGTGCGCTGCTGC
GGCATTCGCAGGTGTTGCTACTCGACGAGGCCACGAGCGCTGTGGACGCC
GAGACGGACCGGCTGATACAAGAGACCATTCGCACCGAATTTAAGGGAGC
GACCCTCCTTACCATTGCCCATCGCATCTTCACGTTGGTTGATTACAATC
GAATTGCGGTGCTGGACGCGGGAACGGTGGTAGAGTTCGATGCGCCCCTG
ACGCTTTTGAAAAAGAAGGGGGGGCATTTCCGGGGTTTGGCTGAAAAGGC
GGCGGGTGACATGGGGATGGTGATGGAGATGTTTGAGCAGGGCGCGGCGG
GTTTGCTGAATGGAGGGGGGAAGGAAAATGGCGGACATGGACAGGAAATG
ATAACCATCTCGAAATAATAATAATAATAATAATAATAATAATAATAATA
ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA
ATAGTAATAATAATAGTCTGGTCGAGAGATAGAAGTGCTGGTTGTTGTTT
GTGGTTTGTGGTAGCATAGACGAGCAATAATGAGCAGCGAAAAAAGCAAA
AACGAAGGGGATATCA
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protein sequence of jgi.p|Nanoce1779_2|352229

>mRNA_10579-protein ID=mRNA_10579-protein|Name=jgi.p|Nanoce1779_2|352229|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
LSLPLPLPHFLPQDPVLFTGTVRFNLDPFDQYSDRDVWTALERAHLAAQV
RRLPQGLLAEVEEGGKNFSLGERQLLCMARALLRHSQVLLLDEATSAVDA
ETDRLIQETIRTEFKGATLLTIAHRIFTLVDYNRIAVLDAGTVVEFDAPL
TLLKKKGGHFRGLAEKAAGDMGMVMEMFEQGAAGLLNGGGKENGGHGQEM
ITISK*
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mRNA from alignment at scaffold_56:19534..20996-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10579 ID=mRNA_10579|Name=jgi.p|Nanoce1779_2|352229|organism=Nannochloropsis oceanica|type=mRNA|length=1463bp|location=Sequence derived from alignment at scaffold_56:19534..20996- (Nannochloropsis oceanica)
TTATCTTTACCCCTCCCTCTCCCTCACTTCCTCCCCCAGGACCCCGTTCT
CTTCACGGGCACAGTGCGCTTTAACCTCGACCCCTTCGACCAGTACTCGG
ATCGCGACGTTTGGACGGCCTTGGAGAGGGCTCATTTGGCGGCGCAGGTC
CGCCGGTTGCCGCAGGTGAGGGAGGCAAGGAGGGAGGGAGGGAGGGGAGC
TTGCTTCTTGGTTTGTCTCTCGGGAAGCTTATCGTTACTGCTTTCGTTCC
CTATTTTCCCCCCTCTCTCTTCCTTTCTACTATCGCAGGGGCTGCTGGCC
GAGGTAGAGGAGGGGGGGAAGAACTTCAGTCTGGGCGAGCGGCAATTGCT
GTGCATGGCCCGTGCGCTGCTGCGGCATTCGCAGGTGTTGCTACTCGACG
AGGCCACGAGCGCTGGTACGGAACGGAAAAGCAGGGGGGGGCTACATTCG
CTGGAACGAATGGAGGGAGATGCAGAGGGTGGGCAGAGACACGCACGCGT
ATAGATAATAATAATAATAATATTGATAATAATAATAATAATAATCAAAG
CGAAAACTCCGAGGAAAGAGGGTGGCAAATATATTGACATCGACTCACGC
TTATGTTGCACTCTCTCCCGCACCACATCAACCACAGTGGACGCCGAGAC
GGACCGGCTGATACAAGAGACCATTCGCACCGAATTTAAGGGAGCGACCC
TCCTTACCATTGCCCATCGCATCTTCACGTTGGTTGATTACAATCGAATT
GCGGTGCTGGACGCGGGAACGGTGGTAGAGTTCGATGCGCCCCTGGTACG
TTATTATTATTATTCGGTGAATAGTGAGAGGGAAGGCAGAGGGGACAAGG
CGTGAAGGAAACTCGGTGATGAGGGAGGAGTGTGTGGAACCAAGGCGCAC
ATTCCGGTGGGAAAGACCCAATTTTCGATTCAAATCTGACCCAGGCTCCC
ATTCGTTTTCACCACCATCATCGCTGTCACCACCACAATCCATACAGACG
CTTTTGAAAAAGAAGGGGGGGCATTTCCGGGGTTTGGCTGAAAAGGCGGC
GGGTGACATGGGGATGGTGATGGAGATGTTTGAGCAGGGCGCGGCGGGTT
TGCTGAATGGAGGGGGGAAGGAAAATGGCGGACATGGACAGGAAATGATA
ACCATCTCGAAATAATAATAATAATAATAATAATAATAATAATAATAATA
ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA
GTAATAATAATAGTCTGGTCGAGAGATAGAAGTGCTGGTTGTTGTTTGTG
GTTTGTGGTAGCATAGACGAGCAATAATGAGCAGCGAAAAAAGCAAAAAC
GAAGGGGATATCA
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Coding sequence (CDS) from alignment at scaffold_56:19534..20996-

>mRNA_10579 ID=mRNA_10579|Name=jgi.p|Nanoce1779_2|352229|organism=Nannochloropsis oceanica|type=CDS|length=2472bp|location=Sequence derived from alignment at scaffold_56:19534..20996- (Nannochloropsis oceanica)
ACGCTTTTGAAAAAGAAGGGGGGGCATTTCCGGGGTTTGGCTGAAAAGGC
GGCGGGTGACATGGGGATGGTGATGGAGATGTTTGAGCAGGGCGCGGCGG
GTTTGCTGAATGGAGGGGGGAAGGAAAATGGCGGACATGGACAGGAAATG
ATAACCATCTCGAAATAATGGACGCCGAGACGGACCGGCTGATACAAGAG
ACCATTCGCACCGAATTTAAGGGAGCGACCCTCCTTACCATTGCCCATCG
CATCTTCACGTTGGTTGATTACAATCGAATTGCGGTGCTGGACGCGGGAA
CGGTGGTAGAGTTCGATGCGCCCCTGGGGCTGCTGGCCGAGGTAGAGGAG
GGGGGGAAGAACTTCAGTCTGGGCGAGCGGCAATTGCTGTGCATGGCCCG
TGCGCTGCTGCGGCATTCGCAGGTGTTGCTACTCGACGAGGCCACGAGCG
CTGTTATCTTTACCCCTCCCTCTCCCTCACTTCCTCCCCCAGGACCCCGT
TCTCTTCACGGGCACAGTGCGCTTTAACCTCGACCCCTTCGACCAGTACT
CGGATCGCGACGTTTGGACGGCCTTGGAGAGGGCTCATTTGGCGGCGCAG
GTCCGCCGGTTGCCGCAGACGCTTTTGAAAAAGAAGGGGGGGCATTTCCG
GGGTTTGGCTGAAAAGGCGGCGGGTGACATGGGGATGGTGATGGAGATGT
TTGAGCAGGGCGCGGCGGGTTTGCTGAATGGAGGGGGGAAGGAAAATGGC
GGACATGGACAGGAAATGATAACCATCTCGAAATAATGGACGCCGAGACG
GACCGGCTGATACAAGAGACCATTCGCACCGAATTTAAGGGAGCGACCCT
CCTTACCATTGCCCATCGCATCTTCACGTTGGTTGATTACAATCGAATTG
CGGTGCTGGACGCGGGAACGGTGGTAGAGTTCGATGCGCCCCTGGGGCTG
CTGGCCGAGGTAGAGGAGGGGGGGAAGAACTTCAGTCTGGGCGAGCGGCA
ATTGCTGTGCATGGCCCGTGCGCTGCTGCGGCATTCGCAGGTGTTGCTAC
TCGACGAGGCCACGAGCGCTGTTATCTTTACCCCTCCCTCTCCCTCACTT
CCTCCCCCAGGACCCCGTTCTCTTCACGGGCACAGTGCGCTTTAACCTCG
ACCCCTTCGACCAGTACTCGGATCGCGACGTTTGGACGGCCTTGGAGAGG
GCTCATTTGGCGGCGCAGGTCCGCCGGTTGCCGCAGACGCTTTTGAAAAA
GAAGGGGGGGCATTTCCGGGGTTTGGCTGAAAAGGCGGCGGGTGACATGG
GGATGGTGATGGAGATGTTTGAGCAGGGCGCGGCGGGTTTGCTGAATGGA
GGGGGGAAGGAAAATGGCGGACATGGACAGGAAATGATAACCATCTCGAA
ATAATGGACGCCGAGACGGACCGGCTGATACAAGAGACCATTCGCACCGA
ATTTAAGGGAGCGACCCTCCTTACCATTGCCCATCGCATCTTCACGTTGG
TTGATTACAATCGAATTGCGGTGCTGGACGCGGGAACGGTGGTAGAGTTC
GATGCGCCCCTGGGGCTGCTGGCCGAGGTAGAGGAGGGGGGGAAGAACTT
CAGTCTGGGCGAGCGGCAATTGCTGTGCATGGCCCGTGCGCTGCTGCGGC
ATTCGCAGGTGTTGCTACTCGACGAGGCCACGAGCGCTGTTATCTTTACC
CCTCCCTCTCCCTCACTTCCTCCCCCAGGACCCCGTTCTCTTCACGGGCA
CAGTGCGCTTTAACCTCGACCCCTTCGACCAGTACTCGGATCGCGACGTT
TGGACGGCCTTGGAGAGGGCTCATTTGGCGGCGCAGGTCCGCCGGTTGCC
GCAGACGCTTTTGAAAAAGAAGGGGGGGCATTTCCGGGGTTTGGCTGAAA
AGGCGGCGGGTGACATGGGGATGGTGATGGAGATGTTTGAGCAGGGCGCG
GCGGGTTTGCTGAATGGAGGGGGGAAGGAAAATGGCGGACATGGACAGGA
AATGATAACCATCTCGAAATAATGGACGCCGAGACGGACCGGCTGATACA
AGAGACCATTCGCACCGAATTTAAGGGAGCGACCCTCCTTACCATTGCCC
ATCGCATCTTCACGTTGGTTGATTACAATCGAATTGCGGTGCTGGACGCG
GGAACGGTGGTAGAGTTCGATGCGCCCCTGGGGCTGCTGGCCGAGGTAGA
GGAGGGGGGGAAGAACTTCAGTCTGGGCGAGCGGCAATTGCTGTGCATGG
CCCGTGCGCTGCTGCGGCATTCGCAGGTGTTGCTACTCGACGAGGCCACG
AGCGCTGTTATCTTTACCCCTCCCTCTCCCTCACTTCCTCCCCCAGGACC
CCGTTCTCTTCACGGGCACAGTGCGCTTTAACCTCGACCCCTTCGACCAG
TACTCGGATCGCGACGTTTGGACGGCCTTGGAGAGGGCTCATTTGGCGGC
GCAGGTCCGCCGGTTGCCGCAG
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Synonyms
Publications