jgi.p|Nanoce1779_2|611387, mRNA_10577 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611387
Unique NamemRNA_10577
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1194
Alignment locationscaffold_56:14020..15942 +

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Properties
Property NameValue
TranscriptId611473
TrackFilteredModels2
ProteinId611387
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:14020..15942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611387gene_10577Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611387mRNA_10577-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10577CDS_10577Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10577 ID=mRNA_10577|Name=jgi.p|Nanoce1779_2|611387|organism=Nannochloropsis oceanica|type=mRNA|length=1194bp
GCTCCTCCTCACACAGAATTTTTCGTTCGCTATTGATTTTCTCTGATTCC
TTATTGACTGTATTATCTATCATCCCTATGTCTTTACTATCTACCATTGG
CAAGGGGCTTTTTTGATGCCTCCTGCCCAATCATTGGCCATCTTCCTTGC
CCCTCCTGCTCTCCTTGTCCGCCAAGACCGCTTATCCACTGTACTGAGGC
CTTCGCACGCGGAGAGAAAGTTCAGAGAGTTTTAATTTCCCTGCCATTTT
CTGCTGAAGTGTAGCTGCAAGGAAGCAATATGCAAAGACCCCACTTTCCC
CCCCTATACTCTATACAACCAGCCACGGGGTGGGACACGACATGGCACCT
TTGGAACAGTGACCACTCCCTTACCACGCGGCTGCATCGACATTCCTGAC
GCAAGGCCTTTGTCCCCTTTGTACAAGCCACTTCCCCCCCAAAAAATATG
CCCACTTACCATCGGACCCCCGCCCCAGCGGCGACAACATGCCCACTCTC
CCATGACACCTTACATTCTTCTCCCTTTTCTCCCCCCTCCCCCTTAATTC
ACACATGTACGCCGCCGCCTCTCCCGTCTTTTTCCGTGCTGTTCTTCTGA
TCATCTCAAAACGTCCCCCCGTAGCCTTCCAACGTCACTACCACCCAGCA
CCTTAACTATGCGTTTTCTTTCCCTCATCGTCTCCGCCGTCGCCGTCCTC
GGTGCTGTGGCTGATCCCGAGCCCCTGCGCGGTCAGGGGCGTGCACTGTA
CGTGTCGACCTTCGGTGGCATCGCCTACAACAATAACTATCCCATCAACG
CCTGTATGTACTTCGACCGGTACCCCAAGGCCGTATTCAGCGACTGCGAC
GGACACTCCGCCGCAGATGCTTACTGCCACAACCAGGGCTATGCTCGTGC
AATCGACTACACGCTCACCTCCTTCAGGACACTCAAGACACCCTCCTCCT
TCATCATGGGCAGCCAAAAAATCGTTGAGGCCGCTCTCATGGATGACGCC
AGCTCGGTCCTGACGGACGTCCAATGCGATCAGGCCTAAGCCACTCTCTT
CTCGCTACTTGACCCTACCCTCTTTCTCTCGGTGTTGAAGGAGGGAAGGA
AGCAGGAGGAGGGAGGGGGCGCGGTAGGGACAGCAATAGCAGCAGCAGCA
GCAGAATATTTTGTGAAGTCAAATTTTTGGGGGCGGACAGAAGG
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protein sequence of jgi.p|Nanoce1779_2|611387

>mRNA_10577-protein ID=mRNA_10577-protein|Name=jgi.p|Nanoce1779_2|611387|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MRFLSLIVSAVAVLGAVADPEPLRGQGRALYVSTFGGIAYNNNYPINACM
YFDRYPKAVFSDCDGHSAADAYCHNQGYARAIDYTLTSFRTLKTPSSFIM
GSQKIVEAALMDDASSVLTDVQCDQA*
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mRNA from alignment at scaffold_56:14020..15942+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10577 ID=mRNA_10577|Name=jgi.p|Nanoce1779_2|611387|organism=Nannochloropsis oceanica|type=mRNA|length=1923bp|location=Sequence derived from alignment at scaffold_56:14020..15942+ (Nannochloropsis oceanica)
GCTCCTCCTCACACAGAATTTTTCGTTCGCTATTGATTTTCTCTGATTCC
TTATTGACTGTATTATCTATCATCCCTATGTCTTTACTATCTACCATTGG
CAAGGGGCTTTTTTGATGCCTCCTGCCCAATCATTGGCCATCTTCCTTGC
CCCTCCTGCTCTCCTTGTCCGCCAAGACCGCTTATCCACTGTACTGAGGC
CTTCGCACGCGGAGAGAAAGTTCAGAGAGTTTTAATTTCCCTGCCATTTT
CTGCTGAAGTGTAGCTGCAAGGAAGCAATATGCAAAGACCCCACTTTCCC
CCCCTATACTCTATACAACCAGCCACGGGGTGGGACACGACATGGCACCT
TTGGAACAGTGACCACTCCCTTACCACGCGGCTGCATCGACATTCCTGAC
GCAAGGCCTTTGTCCCCTTTGTACAAGCCACTTCCCCCCCAAAAAATATG
CCCACTTACCATCGGACCCCCGCCCCAGCGGCGACAACATGCCCACTCTC
CCATGACACCTTACATTCTTCTCCCTTTTCTCCCCCCTCCCCCTTAATTC
ACACATGTACGCCGCCGCCTCTCCCGTCTTTTTCCGTGCTGTTCTTCTGA
TCATCTCAAAACGTCCCCCCGTAGCCTTCCAACGTCACTACCACCCAGCA
CCTTAACTATGCGTTTTCTTTCCCTCATCGTCTCCGCCGTCGCCGTCCTC
GGTGCTGTGGCTGATCCCGAGGTACGTATTATATTCAGTGCTTGGGTGCC
TTCACTGTGGGCTTTTCCGACATCGAAAAATCTCATTTCCCTCAGTAAGC
TTTTTTTTCCTTGAAGGAATTTCCTCCCCAAGGCAGCTACTCTCAATTTA
CCCCTCCACTCCCGTATTAAATCCTCATGCCAGAAGGTGCAGGCTCAACA
GTTTGGGTTTGTGTACACACATGTTTGGTATCTTCTGCCTCCCTCTTTCT
GCAACTGCTCTATTACTTCTCCATTCACATCCTCCCTTTCTCTCCCTTCC
TTTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCCCCCTTCCTCCCTCCCTCCCTCCCACACAGCCCCTGCGCGGTCAGG
GGCGTGCACTGTACGTGTCGACCTTCGGTGGCATCGCCTACAACAATAAC
TATCCCATCAACGCCTGTATGTACTTCGACCGGTACCCCAAGGCCGTATT
CAGGTAATTCCAGAGGGAGGGCGGGAGGGAGGGCGTGAGGGAGGGAGGCC
AGTGCCAGACGTACCGCCTAGGTCCTCATTCTTCGGTGGTGTGCATCCCC
GGCTCCCTAAAAGGCATTACCGGCCACTGACTCACCACCAAGCCCTTCCC
TCCCTCCCTTCCTCCCTCCATTCCACGTAGCGACTGCGACGGACACTCCG
CCGCAGATGCTTACTGCCACAACCAGGGCTATGCTCGTGCAATCGACTAC
ACGCTCACCTCCTTCAGGACACTCAAGACACCCTGTACGTCCTCCCTTCT
CCCTTCTCCCTCTCCTCCTTCACCCCCTCCCTCCCTCCCTCCCTCCTCAT
CCACCCACGGTCCCTTTCCCTCCATCCCTTCTTCCCTCCTTCCCTCCTTC
CCTCGGCTCTGAACCCCCCTTAGCCTCCTTCATCATGGGCAGCCAAAAAA
TCGTTGAGGCCGCTCTCATGGATGACGCCAGCTCGGTCCTGACGGACGTC
CAATGCGATCAGGCCTAAGCCACTCTCTTCTCGCTACTTGACCCTACCCT
CTTTCTCTCGGTGTTGAAGGAGGGAAGGAAGCAGGAGGAGGGAGGGGGCG
CGGTAGGGACAGCAATAGCAGCAGCAGCAGCAGAATATTTTGTGAAGTCA
AATTTTTGGGGGCGGACAGAAGG
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Coding sequence (CDS) from alignment at scaffold_56:14020..15942+

>mRNA_10577 ID=mRNA_10577|Name=jgi.p|Nanoce1779_2|611387|organism=Nannochloropsis oceanica|type=CDS|length=1524bp|location=Sequence derived from alignment at scaffold_56:14020..15942+ (Nannochloropsis oceanica)
ATGCGTTTTCTTTCCCTCATCGTCTCCGCCGTCGCCGTCCTCGGTGCTGT
GGCTGATCCCGAGCCCCTGCGCGGTCAGGGGCGTGCACTGTACGTGTCGA
CCTTCGGTGGCATCGCCTACAACAATAACTATCCCATCAACGCCTGTATG
TACTTCGACCGGTACCCCAAGGCCGTATTCAGCGACTGCGACGGACACTC
CGCCGCAGATGCTTACTGCCACAACCAGGGCTATGCTCGTGCAATCGACT
ACACGCTCACCTCCTTCAGGACACTCAAGACACCCTCCTCCTTCATCATG
GGCAGCCAAAAAATCGTTGAGGCCGCTCTCATGGATGACGCCAGCTCGGT
CCTGACGGACGTCCAATGCGATCAGGCCTAAATGCGTTTTCTTTCCCTCA
TCGTCTCCGCCGTCGCCGTCCTCGGTGCTGTGGCTGATCCCGAGCCCCTG
CGCGGTCAGGGGCGTGCACTGTACGTGTCGACCTTCGGTGGCATCGCCTA
CAACAATAACTATCCCATCAACGCCTGTATGTACTTCGACCGGTACCCCA
AGGCCGTATTCAGCGACTGCGACGGACACTCCGCCGCAGATGCTTACTGC
CACAACCAGGGCTATGCTCGTGCAATCGACTACACGCTCACCTCCTTCAG
GACACTCAAGACACCCTCCTCCTTCATCATGGGCAGCCAAAAAATCGTTG
AGGCCGCTCTCATGGATGACGCCAGCTCGGTCCTGACGGACGTCCAATGC
GATCAGGCCTAAATGCGTTTTCTTTCCCTCATCGTCTCCGCCGTCGCCGT
CCTCGGTGCTGTGGCTGATCCCGAGCCCCTGCGCGGTCAGGGGCGTGCAC
TGTACGTGTCGACCTTCGGTGGCATCGCCTACAACAATAACTATCCCATC
AACGCCTGTATGTACTTCGACCGGTACCCCAAGGCCGTATTCAGCGACTG
CGACGGACACTCCGCCGCAGATGCTTACTGCCACAACCAGGGCTATGCTC
GTGCAATCGACTACACGCTCACCTCCTTCAGGACACTCAAGACACCCTCC
TCCTTCATCATGGGCAGCCAAAAAATCGTTGAGGCCGCTCTCATGGATGA
CGCCAGCTCGGTCCTGACGGACGTCCAATGCGATCAGGCCTAAATGCGTT
TTCTTTCCCTCATCGTCTCCGCCGTCGCCGTCCTCGGTGCTGTGGCTGAT
CCCGAGCCCCTGCGCGGTCAGGGGCGTGCACTGTACGTGTCGACCTTCGG
TGGCATCGCCTACAACAATAACTATCCCATCAACGCCTGTATGTACTTCG
ACCGGTACCCCAAGGCCGTATTCAGCGACTGCGACGGACACTCCGCCGCA
GATGCTTACTGCCACAACCAGGGCTATGCTCGTGCAATCGACTACACGCT
CACCTCCTTCAGGACACTCAAGACACCCTCCTCCTTCATCATGGGCAGCC
AAAAAATCGTTGAGGCCGCTCTCATGGATGACGCCAGCTCGGTCCTGACG
GACGTCCAATGCGATCAGGCCTAA
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Synonyms
Publications