jgi.p|Nanoce1779_2|560933, mRNA_10576 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|560933
Unique NamemRNA_10576
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2364
Alignment locationscaffold_56:10055..12761 -

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Properties
Property NameValue
TranscriptId561019
TrackFilteredModels2
ProteinId560933
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:10055..12761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|560933gene_10576Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|560933mRNA_10576-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10576CDS_10576Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10576 ID=mRNA_10576|Name=jgi.p|Nanoce1779_2|560933|organism=Nannochloropsis oceanica|type=mRNA|length=2364bp
ACAGGTGCGATTGGTAATCATTTTGATGCACTATTTCTCTTTTGCGCTGT
TCCTCTGCGTCTCTATGGCGACAAACGTCCTCCTCTTTCCTCTCGCCTCA
GCCGCCGCTGCCGCCACCAGGAGAATACCGCGGCATGCAATCCTCCCCAC
CACCGCGGCATTTCTCAGGCCTTTTTCCCTCCGCCCCAGTAATCCGATCG
AGCTATTTGCATTTTCCCTTTCGACCTCTTCTTCTACAACCGCTACCAGC
TCCCTTTCCCCTATTCACCTCGTCGCCTCTGACGTAGATGGCACCCTCCT
CACAAGCAGACACACCGTCTCCTCCCGCACAGTCGCCGCTATCCGCTCCG
TCCAACAAAAAGGCATTCGCTTCATCGTTGCGACGGGTAAGAGCCGCGGT
GGCGTTCGTATCGCTCTCGGAAAATTGGGTGAGGAGCTCACTTCTAGCAG
TGCCCCGGGAGGGGTATATTTACAGGGCTTGATTGTATACAAAGGAGGAG
AGGTTGTGTACGAGCGCACGCTGGAGGCAGCTGTGGCCTTAGATGTGATG
GCGATTGCCAGAAAGAAAGGTATTTCGCTTATTGCTTTCAATGGGGATAG
GATACTCTGCGAGAAGATGGACGAAAGCATCGCGTCCGTCACCGCACAGC
ACGAGCCCATGCCAGAGGTGGTGCCCCTCGAAGACTTCATTTCTTCCCCC
TCATCATCGACAAATAAAATCCACAAACTTATCCTTCTTGGTCGCCCCTC
CGTTATCGACTCCATCCGTCCTTCCCTAGCCTCCTACCTCGGCCCGCGCG
CCACCCTCACCCAAGCGCAAGGCGATATGCTAGAAGTCCTGCCCCCTGGT
GGCTCCAAGGGACTCGGCGTCCAGAAGCTTCTCGAAGCTCTTAAAGTCGA
TAAAGCAAATCTTTTGGCCATCGGGGACCAGGAGAATGATCTAGAAATGC
TAAAAATGGCGGGAACAGCAGTCGCGATGGGTAACGCCCCGCAGCACGTG
AAGGCCGTGGCTGGGTTCCAGACCCGAAGCAATGACGAAGATGGCGCGGC
AAGGGCCTTTGAGAGGTTTTGCCTGGACATAAGGTGACCAATGTAAAGGT
TGAACGGAGGTTAATGCGTGTATAAAGAACGCAATGAGCACGCCACGACC
ACGGCAGCTACAAAGACTTGTACCTCCCGGTCTGTGTTTACCTTACCCAC
GCCGCACAACTCAGCAAAAGGTAGGGAGGGGCGGGCGTCGAGTAGTTGAA
GGTGGCCGGCAAAGGGGAGGGTGAGAAGGAGGGGGAAGGAGAAAGAGGAG
GGGAAAGGGTGAGAAGCAGTAGCTTCCTCATCAGGATTTGCTCTGGTGCC
TGCACTACCTGCAGGAGTAGTTGTAGCAGCAGCACCTGATAAACCACCAT
GGCCATTTGCAGCAGCAGCAGCTGCTGCAGCAATGTAAAATGCTCGCGCA
TCTCGTCCAGGCGGGGCGCAGACATTACGAATGGGACTTTTGTAGTAGGA
GTTGACGCCACTGAAAGGCAAGGCCACAATAACGATGGGGAGAGAGGGAG
GGAGGGAGCGAAGGAGGGGGAGGCAGGACGAAGGCGTGCTAATGTTGCGA
CTACTTTTGGTCCACTCATTAGAGGAGCCAGTGATTTTTTCTTGCTCGTC
AACCGGGTCGAGAAGGAGAAGTCCGCAGAGGTCCAATCGCGGGGAGAAGG
AAGGGAGGCGGGCAGCGACACGAACGGCAACCGAAGCCCCGCGCGAATGG
CCAATTAGCATGACTTTTTTCGGTTTCTCTTTATTTAATCGACGCAAAAT
ATCATCAACTTCACCGGCTTCGCCTTGACGGTCTGGGAGGAGTGTGACGC
TGTCTGGGGCAAGGGAGGGGATATCGGCGAGGAGGCGACGTTGGTAGGAG
GTGTATTGGTCTGCTGGTATGCGATAGCCTCCAAGAAGAAAGACAGCGGT
GGGAGATGGGTCTTGCGTTACATCCAGAGAGATGACTGGCAAACGGGGAA
GCAGGAGGCCGCCAAAGAGGGTGGTAGCTTTCGCGAGATGGTTGAGCACG
GCGCCGGAGCGTGTCGTGGAAACAGTATGGGACGGCGTCCATGCCTGGGA
AAGGGCCCGAAGAAAGGCAAGGAGGAGAAGCGAGGACATAAGGAGAACAC
GGTCGCAGGGATGTGGTCTTTGTCGCGGCCGTGGCATGCTATGTGTGGCG
GGGTGTGGGTGGGGGAGTGAGTGCAGGCACCCAACGAAGGCAACGGCTCT
GGCGATTCCAGCGAGGAGCTTTTACGTGACCATACAGCTTGTCCATACAC
AAGCGCACAGACACACAGTTATACCAATGTGACGCGCCTGGGGCAGCCAC
ACGGCCCCGGTCGG
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protein sequence of jgi.p|Nanoce1779_2|560933

>mRNA_10576-protein ID=mRNA_10576-protein|Name=jgi.p|Nanoce1779_2|560933|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MHYFSFALFLCVSMATNVLLFPLASAAAAATRRIPRHAILPTTAAFLRPF
SLRPSNPIELFAFSLSTSSSTTATSSLSPIHLVASDVDGTLLTSRHTVSS
RTVAAIRSVQQKGIRFIVATGKSRGGVRIALGKLGEELTSSSAPGGVYLQ
GLIVYKGGEVVYERTLEAAVALDVMAIARKKGISLIAFNGDRILCEKMDE
SIASVTAQHEPMPEVVPLEDFISSPSSSTNKIHKLILLGRPSVIDSIRPS
LASYLGPRATLTQAQGDMLEVLPPGGSKGLGVQKLLEALKVDKANLLAIG
DQENDLEMLKMAGTAVAMGNAPQHVKAVAGFQTRSNDEDGAARAFERFCL
DIR*
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mRNA from alignment at scaffold_56:10055..12761-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10576 ID=mRNA_10576|Name=jgi.p|Nanoce1779_2|560933|organism=Nannochloropsis oceanica|type=mRNA|length=2707bp|location=Sequence derived from alignment at scaffold_56:10055..12761- (Nannochloropsis oceanica)
ACAGGTGCGATTGGTAATCATTTTGATGCACTATTTCTCTTTTGCGCTGT
TCCTCTGCGTCTCTATGGCGACAAACGTCCTCCTCTTTCCTCTCGCCTCA
GCCGCCGCTGCCGCCACCAGGAGAATACCGCGGCATGCAATCCTCCCCAC
CACCGCGGCATTTCTCAGGCCTTTTTCCCTCCGCCCCAGTAATCCGATCG
AGCTATTTGCATTTTCCCTTTCGACCTCTTCTTCTACAACCGCTACCAGC
TCCCTTTCCCCTATTCACCTCGTCGCCTCTGACGTAGATGGCACCCTCCT
CACAAGCAGACACACCGTCTCCTCCCGCACAGTCGCCGCTATCCGCTCCG
TCCAACAAAAAGGCATTCGCTTCATCGTTGCGACGGGTAAGAGCCGCGGT
GGCGTTCGTATCGCTCTCGGAAAATTGGGTGAGGAGCTCACTTCTAGCAG
TGCCCCGGGAGGGGTATATTTACAGGGCTTGATTGTATACAAAGGAGGAG
AGGTTGTGTACGAGCGCACGCTGGAGGCAGCTGTGGCCTTAGATGTGATG
GCGATTGCCAGAAAGAAAGGTATTTCGCTTATTGCTTTCAATGGGGATAG
GATACTCTGCGAGAAGATGGACGAAAGCATCGCGTCCGTCACCGCACAGC
ACGAGCCCATGCCAGAGGTGGTGCCCCTCGAAGACTTCATTTCTTCCCCC
TCATCATCGACAAATAAAATCCACAAACTTATCCTTCTTGGTCGCCCCTC
CGTTATCGACTCCATCCGTCCTTCCCTAGCCTCCTACCTCGGCCCGCGCG
CCACCCTCACCCAAGCGCAAGGCGATATGCTAGAAGTCCTGCCCCCTGGT
GGCTCCAAGGGACTCGGCGTCCAGAAGCTTCTCGAAGCTCTTAAAGTCGA
TAAAGCAAATCTTTTGGCCATCGGGGACCAGGAGAATGATCTAGAAATGC
TAAAAATGGCGGGAACAGCAGTCGCGATGGGTAACGCCCCGCAGCACGTG
AAGGCCGTGGCTGGGTTCCAGACCCGAAGCAATGACGAAGATGGCGCGGC
AAGGGCCTTTGAGAGGTTTTGCCTGGACATAAGGTGACCAATGTAAAGGT
TGAACGGAGGTTAATGCGTGTATAAAGAACGCAATGAGGTAACTTATAGA
TTGAGGCAGATTGGATAGAACGGTGGTAGGATAAGAGAAGAAAGCGGTTG
AAACATGGCTATCCAGGCATGGCATGTCTCTCCTTTCAATTTCTTTTGAG
AAATCGGTTCATTTCTTTATATGAATTATGAACAAGTGTCCGCTTGCATA
CTGCCGTCCCTCTCAATCAACACTCCACCGCGTAATTTACATCATGTCCT
CCGCTCCTCCTCCCTCCCACACCACTGAACCTCGCATACTCCCACTAAGC
CCTCCTTCCTCGACCCTCCTCCGAATCCTCTCCCTCAATCCCTCCCCCTT
TCCCCCCTTCCCCCCCACCCACCACTCACAGCACGCCACGACCACGGCAG
CTACAAAGACTTGTACCTCCCGGTCTGTGTTTACCTTACCCACGCCGCAC
AACTCAGCAAAAGGTAGGGAGGGGCGGGCGTCGAGTAGTTGAAGGTGGCC
GGCAAAGGGGAGGGTGAGAAGGAGGGGGAAGGAGAAAGAGGAGGGGAAAG
GGTGAGAAGCAGTAGCTTCCTCATCAGGATTTGCTCTGGTGCCTGCACTA
CCTGCAGGAGTAGTTGTAGCAGCAGCACCTGATAAACCACCATGGCCATT
TGCAGCAGCAGCAGCTGCTGCAGCAATGTAAAATGCTCGCGCATCTCGTC
CAGGCGGGGCGCAGACATTACGAATGGGACTTTTGTAGTAGGAGTTGACG
CCACTGAAAGGCAAGGCCACAATAACGATGGGGAGAGAGGGAGGGAGGGA
GCGAAGGAGGGGGAGGCAGGACGAAGGCGTGCTAATGTTGCGACTACTTT
TGGTCCACTCATTAGAGGAGCCAGTGATTTTTTCTTGCTCGTCAACCGGG
TCGAGAAGGAGAAGTCCGCAGAGGTCCAATCGCGGGGAGAAGGAAGGGAG
GCGGGCAGCGACACGAACGGCAACCGAAGCCCCGCGCGAATGGCCAATTA
GCATGACTTTTTTCGGTTTCTCTTTATTTAATCGACGCAAAATATCATCA
ACTTCACCGGCTTCGCCTTGACGGTCTGGGAGGAGTGTGACGCTGTCTGG
GGCAAGGGAGGGGATATCGGCGAGGAGGCGACGTTGGTAGGAGGTGTATT
GGTCTGCTGGTATGCGATAGCCTCCAAGAAGAAAGACAGCGGTGGGAGAT
GGGTCTTGCGTTACATCCAGAGAGATGACTGGCAAACGGGGAAGCAGGAG
GCCGCCAAAGAGGGTGGTAGCTTTCGCGAGATGGTTGAGCACGGCGCCGG
AGCGTGTCGTGGAAACAGTATGGGACGGCGTCCATGCCTGGGAAAGGGCC
CGAAGAAAGGCAAGGAGGAGAAGCGAGGACATAAGGAGAACACGGTCGCA
GGGATGTGGTCTTTGTCGCGGCCGTGGCATGCTATGTGTGGCGGGGTGTG
GGTGGGGGAGTGAGTGCAGGCACCCAACGAAGGCAACGGCTCTGGCGATT
CCAGCGAGGAGCTTTTACGTGACCATACAGCTTGTCCATACACAAGCGCA
CAGACACACAGTTATACCAATGTGACGCGCCTGGGGCAGCCACACGGCCC
CGGTCGG
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Coding sequence (CDS) from alignment at scaffold_56:10055..12761-

>mRNA_10576 ID=mRNA_10576|Name=jgi.p|Nanoce1779_2|560933|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at scaffold_56:10055..12761- (Nannochloropsis oceanica)
ATGCACTATTTCTCTTTTGCGCTGTTCCTCTGCGTCTCTATGGCGACAAA
CGTCCTCCTCTTTCCTCTCGCCTCAGCCGCCGCTGCCGCCACCAGGAGAA
TACCGCGGCATGCAATCCTCCCCACCACCGCGGCATTTCTCAGGCCTTTT
TCCCTCCGCCCCAGTAATCCGATCGAGCTATTTGCATTTTCCCTTTCGAC
CTCTTCTTCTACAACCGCTACCAGCTCCCTTTCCCCTATTCACCTCGTCG
CCTCTGACGTAGATGGCACCCTCCTCACAAGCAGACACACCGTCTCCTCC
CGCACAGTCGCCGCTATCCGCTCCGTCCAACAAAAAGGCATTCGCTTCAT
CGTTGCGACGGGTAAGAGCCGCGGTGGCGTTCGTATCGCTCTCGGAAAAT
TGGGTGAGGAGCTCACTTCTAGCAGTGCCCCGGGAGGGGTATATTTACAG
GGCTTGATTGTATACAAAGGAGGAGAGGTTGTGTACGAGCGCACGCTGGA
GGCAGCTGTGGCCTTAGATGTGATGGCGATTGCCAGAAAGAAAGGTATTT
CGCTTATTGCTTTCAATGGGGATAGGATACTCTGCGAGAAGATGGACGAA
AGCATCGCGTCCGTCACCGCACAGCACGAGCCCATGCCAGAGGTGGTGCC
CCTCGAAGACTTCATTTCTTCCCCCTCATCATCGACAAATAAAATCCACA
AACTTATCCTTCTTGGTCGCCCCTCCGTTATCGACTCCATCCGTCCTTCC
CTAGCCTCCTACCTCGGCCCGCGCGCCACCCTCACCCAAGCGCAAGGCGA
TATGCTAGAAGTCCTGCCCCCTGGTGGCTCCAAGGGACTCGGCGTCCAGA
AGCTTCTCGAAGCTCTTAAAGTCGATAAAGCAAATCTTTTGGCCATCGGG
GACCAGGAGAATGATCTAGAAATGCTAAAAATGGCGGGAACAGCAGTCGC
GATGGGTAACGCCCCGCAGCACGTGAAGGCCGTGGCTGGGTTCCAGACCC
GAAGCAATGACGAAGATGGCGCGGCAAGGGCCTTTGAGAGGTTTTGCCTG
GACATAAGGTGA
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Synonyms
Publications