jgi.p|Nanoce1779_2|611376, mRNA_10574 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611376
Unique NamemRNA_10574
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length943
Alignment locationscaffold_56:4740..5819 +

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Properties
Property NameValue
TranscriptId611462
TrackFilteredModels2
ProteinId611376
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:4740..5819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611376gene_10574Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611376mRNA_10574-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10574CDS_10574Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10574 ID=mRNA_10574|Name=jgi.p|Nanoce1779_2|611376|organism=Nannochloropsis oceanica|type=mRNA|length=943bp
AGACAGTCAACAAAATCGAAGGAACCATTCCTGCAGCTACGAACCGGCCG
ACCCAGCTCGCATCAGCCCGACAGCGACACCATCCCTCTTGCGACGCCCT
CCCCATCGACAGAAAATAAACATGAGGCACTCGTGGTACACGCAACTGAC
CGGCCTTGCGCTTGAAGCCAGTGAGGCTGCCATGGCCAGCGTCGTACCTG
CAATCTCGTCTGAAGGCCATGCGATTGCCACCTTCGCCGGCGGATGCTTT
TGGGGGATTGAATTGCGATTCGCACGGGTGCCGGGGGTGGTGACCACGGG
AACTGGGTATACACAGGGGCACGTGAAGGAGCCGTCATACCAGGAGGTGT
GCAGTGGAATGACAGGGCATACGGAGGCGGTTCAAGTGTTTTATAATCCG
ATGGAGGTATCGTACGATGAGTTGTTGAAGGTCTTCTGGGAGCGTATTGA
CCCCTTGATGGAGAATGGTCAAGGGGGCGATCGAGGCACGCAATACCGCA
CCGGCATCTATTGCCACACCCCCGCCCAGCTCCAAGCCGCGCAACGGAGC
CGGGATATTGAACAGAAGAAATATTCGCGGCCCATCATGACCGAAATCAA
GCCCGCCACGATCTTTTGGCCGGCGGAGATGTCTCACCAGGGGTACCTGT
GGAAGGGGGGGAGGTTTGGCTCGGCCCAGAGCGCGGAAAAAGGATGCACG
GACCCCATTCGGTGCTATGGATAGGGGATAGACATGTATGGATAGACGTG
TATGGAGCAAGGATGCACGGACCCCATGCGGCGCTATGGATAGTATATAG
ATGCCCCGCGACCCCCGTCTGCTGTAACCGCCCGTCCGTTACCTTTGATG
CGTCTCGAGGGACTCCCCCCAAGCGGCGGGAAGGTGGAAGGGAGGGAAGG
TGGAAGAGAGGGAAGGTGGAAGAGAGGGAAGGTGGAAGGGAGG
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protein sequence of jgi.p|Nanoce1779_2|611376

>mRNA_10574-protein ID=mRNA_10574-protein|Name=jgi.p|Nanoce1779_2|611376|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MRHSWYTQLTGLALEASEAAMASVVPAISSEGHAIATFAGGCFWGIELRF
ARVPGVVTTGTGYTQGHVKEPSYQEVCSGMTGHTEAVQVFYNPMEVSYDE
LLKVFWERIDPLMENGQGGDRGTQYRTGIYCHTPAQLQAAQRSRDIEQKK
YSRPIMTEIKPATIFWPAEMSHQGYLWKGGRFGSAQSAEKGCTDPIRCYG
*
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mRNA from alignment at scaffold_56:4740..5819+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10574 ID=mRNA_10574|Name=jgi.p|Nanoce1779_2|611376|organism=Nannochloropsis oceanica|type=mRNA|length=1080bp|location=Sequence derived from alignment at scaffold_56:4740..5819+ (Nannochloropsis oceanica)
AGACAGTCAACAAAATCGAAGGAACCATTCCTGCAGCTACGAACCGGCCG
ACCCAGCTCGCATCAGCCCGACAGCGACACCATCCCTCTTGCGACGCCCT
CCCCATCGACAGAAAATAAACATGAGGCACTCGTGGTACACGCAACTGAC
CGGCCTTGCGCTTGAAGCCAGTGAGGCTGCCATGGCCAGCGTCGTACCTG
CAATCTCGTCTGAAGGCCATGCGATTGCCACCTTCGCCGGCGGATGCTTT
TGGGGGATTGAATTGCGATTCGCACGGGTGCCGGGGGTGGTGACCACGGG
AACTGGGTATACACAGGGGCACGTGAAGGAGCCGTCATACCAGGAGGTGT
GCAGTGGAATGACAGGGCATACGGAGGCGGTTCAAGTGTTTTATAATCCG
ATGGAGGTATCGTACGATGAGTTGTTGAAGGTCTTCTGGGAGCGTATTGA
CCCCTTGATGGAGAATGGTCAAGGGGGCGATCGAGGTGAGGAGGGAGAGA
GGGGTGCTGGATGATATAGCGATGGAAGCGTTGACCCTTCCGGTTTGCCA
GAAAAAACTCGTTATACAGACCTGAACTCATTTCCCCCCTTTTCGTCTCC
CCTTTCCACTCCCTTCGTCAAGGCACGCAATACCGCACCGGCATCTATTG
CCACACCCCCGCCCAGCTCCAAGCCGCGCAACGGAGCCGGGATATTGAAC
AGAAGAAATATTCGCGGCCCATCATGACCGAAATCAAGCCCGCCACGATC
TTTTGGCCGGCGGAGATGTCTCACCAGGGGTACCTGTGGAAGGGGGGGAG
GTTTGGCTCGGCCCAGAGCGCGGAAAAAGGATGCACGGACCCCATTCGGT
GCTATGGATAGGGGATAGACATGTATGGATAGACGTGTATGGAGCAAGGA
TGCACGGACCCCATGCGGCGCTATGGATAGTATATAGATGCCCCGCGACC
CCCGTCTGCTGTAACCGCCCGTCCGTTACCTTTGATGCGTCTCGAGGGAC
TCCCCCCAAGCGGCGGGAAGGTGGAAGGGAGGGAAGGTGGAAGAGAGGGA
AGGTGGAAGAGAGGGAAGGTGGAAGGGAGG
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Coding sequence (CDS) from alignment at scaffold_56:4740..5819+

>mRNA_10574 ID=mRNA_10574|Name=jgi.p|Nanoce1779_2|611376|organism=Nannochloropsis oceanica|type=CDS|length=1206bp|location=Sequence derived from alignment at scaffold_56:4740..5819+ (Nannochloropsis oceanica)
ATGAGGCACTCGTGGTACACGCAACTGACCGGCCTTGCGCTTGAAGCCAG
TGAGGCTGCCATGGCCAGCGTCGTACCTGCAATCTCGTCTGAAGGCCATG
CGATTGCCACCTTCGCCGGCGGATGCTTTTGGGGGATTGAATTGCGATTC
GCACGGGTGCCGGGGGTGGTGACCACGGGAACTGGGTATACACAGGGGCA
CGTGAAGGAGCCGTCATACCAGGAGGTGTGCAGTGGAATGACAGGGCATA
CGGAGGCGGTTCAAGTGTTTTATAATCCGATGGAGGTATCGTACGATGAG
TTGTTGAAGGTCTTCTGGGAGCGTATTGACCCCTTGATGGAGAATGGTCA
AGGGGGCGATCGAGGCACGCAATACCGCACCGGCATCTATTGCCACACCC
CCGCCCAGCTCCAAGCCGCGCAACGGAGCCGGGATATTGAACAGAAGAAA
TATTCGCGGCCCATCATGACCGAAATCAAGCCCGCCACGATCTTTTGGCC
GGCGGAGATGTCTCACCAGGGGTACCTGTGGAAGGGGGGGAGGTTTGGCT
CGGCCCAGAGCGCGGAAAAAGGATGCACGGACCCCATTCGGTGCTATGGA
TAGATGAGGCACTCGTGGTACACGCAACTGACCGGCCTTGCGCTTGAAGC
CAGTGAGGCTGCCATGGCCAGCGTCGTACCTGCAATCTCGTCTGAAGGCC
ATGCGATTGCCACCTTCGCCGGCGGATGCTTTTGGGGGATTGAATTGCGA
TTCGCACGGGTGCCGGGGGTGGTGACCACGGGAACTGGGTATACACAGGG
GCACGTGAAGGAGCCGTCATACCAGGAGGTGTGCAGTGGAATGACAGGGC
ATACGGAGGCGGTTCAAGTGTTTTATAATCCGATGGAGGTATCGTACGAT
GAGTTGTTGAAGGTCTTCTGGGAGCGTATTGACCCCTTGATGGAGAATGG
TCAAGGGGGCGATCGAGGCACGCAATACCGCACCGGCATCTATTGCCACA
CCCCCGCCCAGCTCCAAGCCGCGCAACGGAGCCGGGATATTGAACAGAAG
AAATATTCGCGGCCCATCATGACCGAAATCAAGCCCGCCACGATCTTTTG
GCCGGCGGAGATGTCTCACCAGGGGTACCTGTGGAAGGGGGGGAGGTTTG
GCTCGGCCCAGAGCGCGGAAAAAGGATGCACGGACCCCATTCGGTGCTAT
GGATAG
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Synonyms
Publications