jgi.p|Nanoce1779_2|575133, mRNA_1049 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|575133
Unique Name	mRNA_1049
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1848
Alignment location	scaffold_2:1093953..1095915 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	575219
Track	FilteredModels2
ProteinId	575133

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1093953..1095915 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575133	gene_1049	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575133	mRNA_1049-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1049	CDS_1049	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1093953..1095915-
coding sequence from alignment at scaffold_2:1093953..1095915-

mRNA sequence

>mRNA_1049 ID=mRNA_1049|Name=jgi.p|Nanoce1779_2|575133|organism=Nannochloropsis oceanica|type=mRNA|length=1848bp
ACAGGCCCGGCCCAGCTTGTGCTGCTGGTGGGGGTGGTATCCTCCTCCCT
GCATCCCAAATCGACAGGTTCTCTCCAGCGCCAGTCCTGTTGCTTCTGCA
TGGCCCCTCTGACCACGCTACCACAACATGACGGCCGCCACTTGCCTCAA
CGAGGCTACACGATTACTAAACGTCAACAATACCATATTACAAACCAATG
CCCCAGTGTCCACCACCACTGCTATTTCCCGCGGCAGCAATCACCACCAC
TTCCCCGGCTGGGGCACCTACAATGAGCAGATTCGTATCGATGACGCCGC
CATCACCATGGCTGCCCATGCCTTGGACAGCCGCCGGCATCCGCACGAGA
TGCTGGGTCCTTTGCAGTCGTCATCCATCTGCGGCAACGACATTCTAAGT
TCTTGTTTCTATTCCATCGGTTTGGTCACTAGTTGTGCGGGCCAGCTTGC
CCCTATCTGCTTTTTGATGGTAGGGCTGGTGCTGTACCTGTTTCGGTCGG
TGTATGGAGAGGCCATCACAGCTATTTGTCAAAATGGTGGAATATATGCC
TTGCTGATCAATACCTCTACGAAAGCAGTGGCAGCTAGTGCTGCCTGTTT
GAGTATTTTGGCGTATATCGCCACGGGTGTCGTGTCTGCAGTCACGGCCT
GCAACTATTTGCATGCCGTCTTTCCTGATTTAATCAACGTACCTGTTGCC
GCCTGCTGTTTGCTTGCTCTCTTTGCGTTTATCGTCGGGATGGGATTACG
GGAAAGCGCAGGGGTAGCAACGGTGATTTGTGCCATCCATGTCGGCACCT
TAGCATTGCTCCTGGTCCTGGGGCTTGTGTATGTCCTTTTCAACGACCTG
GGAGAGCTAAGGGCTAATTTTCATTTGCCGTTCCCAAGCGTGTCTATCAC
AGGCACTGATAATTTGGGTGGAGTCGGGGGACTTAAAGGGGCTGGAAATG
TGGGAGGGTCGGAGGAGGATGTTTTGCCTGGGAGCATTTGGACGGCGTTG
TTGTTTGGGTTCGCCGCGGGAATTTTGGGAGTGAGTGGCTTTGAGACATC
TGCACAGTACATTGAAAGTCAGAAGCCGGGCGTCTTTCTCCTCACGCTGA
AAAATATGCAACAAGCGGTCTGTGTCTTCAATCCTCTCCTCTCTCTTCTG
TCCATCGCCGTGTTGCCCGTCCCCGTCGTTGTGGCGTACTCCGAGACCGT
ACTCGAGCGGGTCGCCGACGTCATGGGGAACTGGCTTCAAGCAGCCCTTG
GACTCGGGCCAGTCAGGGAACCAGACAGCATGATTAATCTGGGGCGGTTG
TTTAGAATCTGGGTGTCCCTAGATGCGTTCGTGGTGCTCAGTGGCGCAGT
CTTGACGGCGTATGTCGGAATCGATGGCTTGATCTATAGCATGACGATAG
ACGGGTGCTTGCCTTCATTTTTGCTGACGCGGAATGAATGGCGCGGGACG
GACCATTTCATTATTTTGTCCTATTTGTTGTTGGCTGTCAGTCAGGTACG
GTGGAGGAATGAGTTTTGACAAAAAGCATTCACACAGTCATACCTCTTCT
CCCTCTCTCTCTCCCTCCCTCCCTCCATTCCTTCTTCTCAGGTAGTGCTC
CTGGAAGGCGACGTCGAAGCCTTGGCCGGCGTGTACGCCTTCTCATTCCT
CGGCGTCATGACCCTATTTGCCATCGGTTGTGGAATGCTGAAGGTAAAAC
GGGCTGAGCTCCCACGCGAGGTGATAGCGCCTTGGTCGCACGTGATGGGA
GGCGGGTCCGCGGTCATTTTAGCGTTCTTGGTGAATCTGGCGAGTCAGTC
TGATTATCTGGTATATTTTTGTTTGTACCTCTCGGGGGTTGGCGTCTT

protein sequence of jgi.p|Nanoce1779_2|575133

>mRNA_1049-protein ID=mRNA_1049-protein|Name=jgi.p|Nanoce1779_2|575133|organism=Nannochloropsis oceanica|type=polypeptide|length=464bp
MTAATCLNEATRLLNVNNTILQTNAPVSTTTAISRGSNHHHFPGWGTYNE
QIRIDDAAITMAAHALDSRRHPHEMLGPLQSSSICGNDILSSCFYSIGLV
TSCAGQLAPICFLMVGLVLYLFRSVYGEAITAICQNGGIYALLINTSTKA
VAASAACLSILAYIATGVVSAVTACNYLHAVFPDLINVPVAACCLLALFA
FIVGMGLRESAGVATVICAIHVGTLALLLVLGLVYVLFNDLGELRANFHL
PFPSVSITGTDNLGGVGGLKGAGNVGGSEEDVLPGSIWTALLFGFAAGIL
GVSGFETSAQYIESQKPGVFLLTLKNMQQAVCVFNPLLSLLSIAVLPVPV
VVAYSETVLERVADVMGNWLQAALGLGPVREPDSMINLGRLFRIWVSLDA
FVVLSGAVLTAYVGIDGLIYSMTIDGCLPSFLLTRNEWRGTDHFIILSYL
LLAVSQVRWRNEF*

mRNA from alignment at scaffold_2:1093953..1095915-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1049 ID=mRNA_1049|Name=jgi.p|Nanoce1779_2|575133|organism=Nannochloropsis oceanica|type=mRNA|length=1963bp|location=Sequence derived from alignment at scaffold_2:1093953..1095915- (Nannochloropsis oceanica)
ACAGGCCCGGCCCAGCTTGTGCTGCTGGTGGGGGTGGTATCCTCCTCCCT
GCATCCCAAATCGACAGGTTCTCTCCAGCGCCAGTCCTGTTGCTTCTGCA
TGGCCCCTCTGACCACGCTACCACAACATGACGGCCGCCACTTGCCTCAA
CGAGGCTACACGATTACTAAACGTCAACAATACCATATTACAAACCAATG
CCCCAGTGTCCACCACCACTGCTATTTCCCGCGGCAGCAATCACCACCAC
TTCCCCGGCTGGGGCACCTACAATGAGCAGATTCGTATCGATGACGCCGC
CATCACCATGGCTGCCCATGCCTTGGACAGCCGCCGGCATCCGCACGAGA
TGCTGGGTCCTTTGCAGTCGTCATCCATCTGCGGCAACGACATTCTAAGT
TCTTGTTTCTATTCCATCGGTTTGGTCACTAGTTGTGCGGGCCAGCTTGC
CCCTATCTGCTTTTTGATGGTAGGGCTGGTGCTGTACCTGTTTCGGTCGG
TGTATGGAGAGGCCATCACAGCTATTTGTCAAAATGGTGGAATATATGCC
TTGCTGATCAATACCTCTACGAAAGCAGTGGCAGCTAGTGCTGCCTGTTT
GAGTATTTTGGCGTATATCGCCACGGGTGTCGTGTCTGCAGTCACGGCCT
GCAACTATTTGCATGCCGTCTTTCCTGATTTAATCAACGTACCTGTTGCC
GCCTGCTGTTTGCTTGCTCTCTTTGCGTTTATCGTCGGGATGGGATTACG
GGAAAGCGCAGGGGTAGCAACGGTGATTTGTGCCATCCATGTCGGCACCT
TAGCATTGCTCCTGGTCCTGGGGCTTGTGTATGTCCTTTTCAACGACCTG
GGAGAGCTAAGGGCTAATTTTCATTTGCCGTTCCCAAGCGTGTCTATCAC
AGGCACTGATAATTTGGGTGGAGTCGGGGGACTTAAAGGGGCTGGAAATG
TGGGAGGGTCGGAGGAGGATGTTTTGCCTGGGAGCATTTGGACGGCGTTG
TTGTTTGGGTTCGCCGCGGGAATTTTGGGAGTGAGTGGCTTTGAGACATC
TGCACAGTACATTGAAAGTCAGAAGCCGGGCGTCTTTCTCCTCACGCTGA
AAAATATGCAACAAGCGGTCTGTGTCTTCAATCCTCTCCTCTCTCTTCTG
TCCATCGCCGTGTTGCCCGTCCCCGTCGTTGTGGCGTACTCCGAGACCGT
ACTCGAGCGGGTCGCCGACGTCATGGGGAACTGGCTTCAAGCAGCCCTTG
GACTCGGGCCAGTCAGGGAACCAGACAGCATGATTAATCTGGGGCGGTTG
TTTAGAATCTGGGTGTCCCTAGATGCGTTCGTGGTGCTCAGTGGCGCAGT
CTTGACGGCGTATGTCGGAATCGATGGTAAGGAAGAAGACGGGATGGGTC
GTCAAGCAGATATGAAAAGCCTTTCTGTCTACATTGATATAATGGCTATC
TCTTACTTACTTCCTTTGTTCACTCGCTTCCTCCCACACAGGCTTGATCT
ATAGCATGACGATAGACGGGTGCTTGCCTTCATTTTTGCTGACGCGGAAT
GAATGGCGCGGGACGGACCATTTCATTATTTTGTCCTATTTGTTGTTGGC
TGTCAGTCAGGTACGGTGGAGGAATGAGTTTTGACAAAAAGCATTCACAC
AGTCATACCTCTTCTCCCTCTCTCTCTCCCTCCCTCCCTCCATTCCTTCT
TCTCAGGTAGTGCTCCTGGAAGGCGACGTCGAAGCCTTGGCCGGCGTGTA
CGCCTTCTCATTCCTCGGCGTCATGACCCTATTTGCCATCGGTTGTGGAA
TGCTGAAGGTAAAACGGGCTGAGCTCCCACGCGAGGTGATAGCGCCTTGG
TCGCACGTGATGGGAGGCGGGTCCGCGGTCATTTTAGCGTTCTTGGTGAA
TCTGGCGAGTCAGTCTGATTATCTGGTATATTTTTGTTTGTACCTCTCGG
GGGTTGGCGTCTT

Coding sequence (CDS) from alignment at scaffold_2:1093953..1095915-

>mRNA_1049 ID=mRNA_1049|Name=jgi.p|Nanoce1779_2|575133|organism=Nannochloropsis oceanica|type=CDS|length=2784bp|location=Sequence derived from alignment at scaffold_2:1093953..1095915- (Nannochloropsis oceanica)
GCTTGATCTATAGCATGACGATAGACGGGTGCTTGCCTTCATTTTTGCTG
ACGCGGAATGAATGGCGCGGGACGGACCATTTCATTATTTTGTCCTATTT
GTTGTTGGCTGTCAGTCAGGTACGGTGGAGGAATGAGTTTTGAATGACGG
CCGCCACTTGCCTCAACGAGGCTACACGATTACTAAACGTCAACAATACC
ATATTACAAACCAATGCCCCAGTGTCCACCACCACTGCTATTTCCCGCGG
CAGCAATCACCACCACTTCCCCGGCTGGGGCACCTACAATGAGCAGATTC
GTATCGATGACGCCGCCATCACCATGGCTGCCCATGCCTTGGACAGCCGC
CGGCATCCGCACGAGATGCTGGGTCCTTTGCAGTCGTCATCCATCTGCGG
CAACGACATTCTAAGTTCTTGTTTCTATTCCATCGGTTTGGTCACTAGTT
GTGCGGGCCAGCTTGCCCCTATCTGCTTTTTGATGGTAGGGCTGGTGCTG
TACCTGTTTCGGTCGGTGTATGGAGAGGCCATCACAGCTATTTGTCAAAA
TGGTGGAATATATGCCTTGCTGATCAATACCTCTACGAAAGCAGTGGCAG
CTAGTGCTGCCTGTTTGAGTATTTTGGCGTATATCGCCACGGGTGTCGTG
TCTGCAGTCACGGCCTGCAACTATTTGCATGCCGTCTTTCCTGATTTAAT
CAACGTACCTGTTGCCGCCTGCTGTTTGCTTGCTCTCTTTGCGTTTATCG
TCGGGATGGGATTACGGGAAAGCGCAGGGGTAGCAACGGTGATTTGTGCC
ATCCATGTCGGCACCTTAGCATTGCTCCTGGTCCTGGGGCTTGTGTATGT
CCTTTTCAACGACCTGGGAGAGCTAAGGGCTAATTTTCATTTGCCGTTCC
CAAGCGTGTCTATCACAGGCACTGATAATTTGGGTGGAGTCGGGGGACTT
AAAGGGGCTGGAAATGTGGGAGGGTCGGAGGAGGATGTTTTGCCTGGGAG
CATTTGGACGGCGTTGTTGTTTGGGTTCGCCGCGGGAATTTTGGGAGTGA
GTGGCTTTGAGACATCTGCACAGTACATTGAAAGTCAGAAGCCGGGCGTC
TTTCTCCTCACGCTGAAAAATATGCAACAAGCGGTCTGTGTCTTCAATCC
TCTCCTCTCTCTTCTGTCCATCGCCGTGTTGCCCGTCCCCGTCGTTGTGG
CGTACTCCGAGACCGTACTCGAGCGGGTCGCCGACGTCATGGGGAACTGG
CTTCAAGCAGCCCTTGGACTCGGGCCAGTCAGGGAACCAGACAGCATGAT
TAATCTGGGGCGGTTGTTTAGAATCTGGGTGTCCCTAGATGCGTTCGTGG
TGCTCAGTGGCGCAGTCTTGACGGCGTATGTCGGAATCGATGGCTTGATC
TATAGCATGACGATAGACGGGTGCTTGCCTTCATTTTTGCTGACGCGGAA
TGAATGGCGCGGGACGGACCATTTCATTATTTTGTCCTATTTGTTGTTGG
CTGTCAGTCAGGTACGGTGGAGGAATGAGTTTTGAATGACGGCCGCCACT
TGCCTCAACGAGGCTACACGATTACTAAACGTCAACAATACCATATTACA
AACCAATGCCCCAGTGTCCACCACCACTGCTATTTCCCGCGGCAGCAATC
ACCACCACTTCCCCGGCTGGGGCACCTACAATGAGCAGATTCGTATCGAT
GACGCCGCCATCACCATGGCTGCCCATGCCTTGGACAGCCGCCGGCATCC
GCACGAGATGCTGGGTCCTTTGCAGTCGTCATCCATCTGCGGCAACGACA
TTCTAAGTTCTTGTTTCTATTCCATCGGTTTGGTCACTAGTTGTGCGGGC
CAGCTTGCCCCTATCTGCTTTTTGATGGTAGGGCTGGTGCTGTACCTGTT
TCGGTCGGTGTATGGAGAGGCCATCACAGCTATTTGTCAAAATGGTGGAA
TATATGCCTTGCTGATCAATACCTCTACGAAAGCAGTGGCAGCTAGTGCT
GCCTGTTTGAGTATTTTGGCGTATATCGCCACGGGTGTCGTGTCTGCAGT
CACGGCCTGCAACTATTTGCATGCCGTCTTTCCTGATTTAATCAACGTAC
CTGTTGCCGCCTGCTGTTTGCTTGCTCTCTTTGCGTTTATCGTCGGGATG
GGATTACGGGAAAGCGCAGGGGTAGCAACGGTGATTTGTGCCATCCATGT
CGGCACCTTAGCATTGCTCCTGGTCCTGGGGCTTGTGTATGTCCTTTTCA
ACGACCTGGGAGAGCTAAGGGCTAATTTTCATTTGCCGTTCCCAAGCGTG
TCTATCACAGGCACTGATAATTTGGGTGGAGTCGGGGGACTTAAAGGGGC
TGGAAATGTGGGAGGGTCGGAGGAGGATGTTTTGCCTGGGAGCATTTGGA
CGGCGTTGTTGTTTGGGTTCGCCGCGGGAATTTTGGGAGTGAGTGGCTTT
GAGACATCTGCACAGTACATTGAAAGTCAGAAGCCGGGCGTCTTTCTCCT
CACGCTGAAAAATATGCAACAAGCGGTCTGTGTCTTCAATCCTCTCCTCT
CTCTTCTGTCCATCGCCGTGTTGCCCGTCCCCGTCGTTGTGGCGTACTCC
GAGACCGTACTCGAGCGGGTCGCCGACGTCATGGGGAACTGGCTTCAAGC
AGCCCTTGGACTCGGGCCAGTCAGGGAACCAGACAGCATGATTAATCTGG
GGCGGTTGTTTAGAATCTGGGTGTCCCTAGATGCGTTCGTGGTGCTCAGT
GGCGCAGTCTTGACGGCGTATGTCGGAATCGATG

Synonyms

Publications