jgi.p|Nanoce1779_2|611365, mRNA_10399 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611365
Unique NamemRNA_10399
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1055
Alignment locationscaffold_55:106109..107430 -

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Properties
Property NameValue
TranscriptId611451
TrackFilteredModels2
ProteinId611365
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_55supercontigscaffold_55:106109..107430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611365gene_10399Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611365mRNA_10399-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10399CDS_10399Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10399 ID=mRNA_10399|Name=jgi.p|Nanoce1779_2|611365|organism=Nannochloropsis oceanica|type=mRNA|length=1055bp
CCTGCGCTACAAGCCTGACGGGACCTCCCGTGCCTGCATCGAACTCCCGT
CCCTCTCCTCCGGTCCGGGCTATATCTCCTTGCGCACCCTTCGCCTCGTG
CAGGCCATCCGTGGGGAGGGCTGCCTTGTCGTCCTTATCACAGGGGCCCG
CAGCAGTACCTACCTCATGCGGCGCCGCACGGGTCTGCCAGTGGTCGACT
ACGAGTGCATTGAGGGAGGTGGAAGACTCATCCATGACCCGCACGCTGTC
ATGGACTTCGCTACCATCCGCCAAGAGGAGGAGAATCCGGCATGGGACGT
GGAGTGGCAGGAAGCCGTCGGGCCACTGGAAACGCTGTGGGCGCTGTATA
AGGAGATGGAGGAGGCTGGATGGCGCGTGGACGGCCGAGATTACTACACC
AACTTCAGGGTGGACACGCGGGGTAAGCCGAAGGAGGAGTGGGAAGCGCT
CAAGGCACGCCTTCCTGCCCTGAGCCTGTCCTCATCGTTCAACCTGGGCA
AGGCGGACATCTACCCCTCCACCTCCGGCAAGGCCGCCGCTGTCGCCCGC
CTCCTGCCCCGCCTCTTCCTCCACCCGGACCAGTGCGTGGCCCTTTTCGA
CGACGACAACGACCTAGGCATGGCAACTCTTCTTCAGGCCGGGAGGCGGA
TCGCTGTGTCCATCACTCATCCCTCTGTTCAAGCCTATGTGAAGGAAGAC
AAGCGGGTGGAGACGGTCAGCAGGCCGGGCATTTTAGGCTCGGAAGAGGC
GCTGGAACGGGTACTGGTGTCGCTGGGTCGTATTCACTGAAATGAGATGC
AAGGAGAATTAAGACGGAGAGGAAAGAATAGGAGGAAAAAGCTTGGTCTG
CGAGAGGCCTAGTGGGCTGAAACATCTTACCGCCGTCGTTTTAGAGGGAG
GAGGGGTGAGAGGGGAGAGCACACTCTGGTGCCAGCTGGACTCGGATTAT
GACCAAATCTCGATTATATGTCAGCATTTACAGCAAGTAAAACAAATTGT
ACAGCAGTATTTACCTATCTCCTCAAATTGTACAGCAGTATTTACCTATC
TCCTC
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protein sequence of jgi.p|Nanoce1779_2|611365

>mRNA_10399-protein ID=mRNA_10399-protein|Name=jgi.p|Nanoce1779_2|611365|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MRRRTGLPVVDYECIEGGGRLIHDPHAVMDFATIRQEEENPAWDVEWQEA
VGPLETLWALYKEMEEAGWRVDGRDYYTNFRVDTRGKPKEEWEALKARLP
ALSLSSSFNLGKADIYPSTSGKAAAVARLLPRLFLHPDQCVALFDDDNDL
GMATLLQAGRRIAVSITHPSVQAYVKEDKRVETVSRPGILGSEEALERVL
VSLGRIH*
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mRNA from alignment at scaffold_55:106109..107430-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10399 ID=mRNA_10399|Name=jgi.p|Nanoce1779_2|611365|organism=Nannochloropsis oceanica|type=mRNA|length=1322bp|location=Sequence derived from alignment at scaffold_55:106109..107430- (Nannochloropsis oceanica)
CCTGCGCTACAAGCCTGACGGGACCTCCCGTGCCTGCATCGAACTCCCGT
CCCTCTCCTCCGGTCCGGGCTATATCTCCTTGCGCACCCTTCGCCTCGTG
CAGGCCATCCGTGGGGAGGGCTGCCTTGTCGTCCTTATCACAGGGGCCCG
CAGCAGTACCTACCTCATGCGGCGCCGCACGGGTCTGCCAGTGGTCGACT
ACGAGTGCATTGAGGGAGGTGGAAGACTCATCCATGACCCGCACGCTGTC
ATGGACTTCGCTACCATCCGCCAAGAGGAGGAGAATCCGGCATGGGACGT
GGAGTGGCAGGAAGCCGTCGGGCCACTGGAAACGCTGTGGGCGCTGTATA
AGGAGATGGAGGAGGCTGGATGGCGCGTGGACGGCCGAGATTACTACACC
AACTTCAGGGTGGACACGCGGGGTAAGCCGAAGGAGGAGTGGGAAGCGCT
CAAGGCACGGTGCGTGTGGGGAGAGAGGAGGTAGGGAGGGAGGGAGGGAG
GGTTGTTTTTTCCTTCCTTTTCCCTTTTCCATTGTATCCATGCAGAACAG
CTTTGGTCAGCGCAAGGGATTAAAAATGAAGGGGTACAGGGAAAATGGAA
GACTTCTTGTTTCTCTTTTTCATCAGTAACAAAAAGGACATGTCGACCTC
CCCCTCTTCCCGTCCTTCTCTTCTGCCCGCACCCTCCACCCACCTCATTC
CACCCTTCCTCCCTTCCTACCCACAGCCTTCCTGCCCTGAGCCTGTCCTC
ATCGTTCAACCTGGGCAAGGCGGACATCTACCCCTCCACCTCCGGCAAGG
CCGCCGCTGTCGCCCGCCTCCTGCCCCGCCTCTTCCTCCACCCGGACCAG
TGCGTGGCCCTTTTCGACGACGACAACGACCTAGGCATGGCAACTCTTCT
TCAGGCCGGGAGGCGGATCGCTGTGTCCATCACTCATCCCTCTGTTCAAG
CCTATGTGAAGGAAGACAAGCGGGTGGAGACGGTCAGCAGGCCGGGCATT
TTAGGCTCGGAAGAGGCGCTGGAACGGGTACTGGTGTCGCTGGGTCGTAT
TCACTGAAATGAGATGCAAGGAGAATTAAGACGGAGAGGAAAGAATAGGA
GGAAAAAGCTTGGTCTGCGAGAGGCCTAGTGGGCTGAAACATCTTACCGC
CGTCGTTTTAGAGGGAGGAGGGGTGAGAGGGGAGAGCACACTCTGGTGCC
AGCTGGACTCGGATTATGACCAAATCTCGATTATATGTCAGCATTTACAG
CAAGTAAAACAAATTGTACAGCAGTATTTACCTATCTCCTCAAATTGTAC
AGCAGTATTTACCTATCTCCTC
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Coding sequence (CDS) from alignment at scaffold_55:106109..107430-

>mRNA_10399 ID=mRNA_10399|Name=jgi.p|Nanoce1779_2|611365|organism=Nannochloropsis oceanica|type=CDS|length=1248bp|location=Sequence derived from alignment at scaffold_55:106109..107430- (Nannochloropsis oceanica)
CCTTCCTGCCCTGAGCCTGTCCTCATCGTTCAACCTGGGCAAGGCGGACA
TCTACCCCTCCACCTCCGGCAAGGCCGCCGCTGTCGCCCGCCTCCTGCCC
CGCCTCTTCCTCCACCCGGACCAGTGCGTGGCCCTTTTCGACGACGACAA
CGACCTAGGCATGGCAACTCTTCTTCAGGCCGGGAGGCGGATCGCTGTGT
CCATCACTCATCCCTCTGTTCAAGCCTATGTGAAGGAAGACAAGCGGGTG
GAGACGGTCAGCAGGCCGGGCATTTTAGGCTCGGAAGAGGCGCTGGAACG
GGTACTGGTGTCGCTGGGTCGTATTCACTGAATGCGGCGCCGCACGGGTC
TGCCAGTGGTCGACTACGAGTGCATTGAGGGAGGTGGAAGACTCATCCAT
GACCCGCACGCTGTCATGGACTTCGCTACCATCCGCCAAGAGGAGGAGAA
TCCGGCATGGGACGTGGAGTGGCAGGAAGCCGTCGGGCCACTGGAAACGC
TGTGGGCGCTGTATAAGGAGATGGAGGAGGCTGGATGGCGCGTGGACGGC
CGAGATTACTACACCAACTTCAGGGTGGACACGCGGGGTAAGCCGAAGGA
GGAGTGGGAAGCGCTCAAGGCACGCCTTCCTGCCCTGAGCCTGTCCTCAT
CGTTCAACCTGGGCAAGGCGGACATCTACCCCTCCACCTCCGGCAAGGCC
GCCGCTGTCGCCCGCCTCCTGCCCCGCCTCTTCCTCCACCCGGACCAGTG
CGTGGCCCTTTTCGACGACGACAACGACCTAGGCATGGCAACTCTTCTTC
AGGCCGGGAGGCGGATCGCTGTGTCCATCACTCATCCCTCTGTTCAAGCC
TATGTGAAGGAAGACAAGCGGGTGGAGACGGTCAGCAGGCCGGGCATTTT
AGGCTCGGAAGAGGCGCTGGAACGGGTACTGGTGTCGCTGGGTCGTATTC
ACTGAATGCGGCGCCGCACGGGTCTGCCAGTGGTCGACTACGAGTGCATT
GAGGGAGGTGGAAGACTCATCCATGACCCGCACGCTGTCATGGACTTCGC
TACCATCCGCCAAGAGGAGGAGAATCCGGCATGGGACGTGGAGTGGCAGG
AAGCCGTCGGGCCACTGGAAACGCTGTGGGCGCTGTATAAGGAGATGGAG
GAGGCTGGATGGCGCGTGGACGGCCGAGATTACTACACCAACTTCAGGGT
GGACACGCGGGGTAAGCCGAAGGAGGAGTGGGAAGCGCTCAAGGCACG
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Synonyms
Publications