jgi.p|Nanoce1779_2|611346, mRNA_10396 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611346
Unique NamemRNA_10396
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length299
Alignment locationscaffold_55:97210..97508 -

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Properties
Property NameValue
TranscriptId611432
TrackFilteredModels2
ProteinId611346
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_55supercontigscaffold_55:97210..97508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611346gene_10396Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611346mRNA_10396-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10396CDS_10396Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10396 ID=mRNA_10396|Name=jgi.p|Nanoce1779_2|611346|organism=Nannochloropsis oceanica|type=mRNA|length=299bp
GGGAGCAAGAGCAACCCCCTGGCCATGGCCATCGGCTTCACGGCCTTCTT
CGCCCTGTGGTTCTTCAACACCCTCCGGAGGGTGAGCATGCAGGGAGTGG
GGGGGACGGGAGGGGAGGAGAGAGGAAGGAAGAAGCTCCGTAAAGTGGGT
GAAACTCCTTCACCTTCCTCAGGTGATCCTTCCCTCCCAGCCCCAGTCCA
AGCTCCAGCATCGGTCGACTTGGACAGGCGAGCCTGCCTCTTGAGCCACC
TCCGCTGATCCTTTTCCTTCATTCCCTCCTTCCCCCCCTCCCTCCCTTC
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protein sequence of jgi.p|Nanoce1779_2|611346

>mRNA_10396-protein ID=mRNA_10396-protein|Name=jgi.p|Nanoce1779_2|611346|organism=Nannochloropsis oceanica|type=polypeptide|length=78bp
MAIGFTAFFALWFFNTLRRVSMQGVGGTGGEERGRKKLRKVGETPSPSSG
DPSLPAPVQAPASVDLDRRACLLSHLR*
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mRNA from alignment at scaffold_55:97210..97508-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10396 ID=mRNA_10396|Name=jgi.p|Nanoce1779_2|611346|organism=Nannochloropsis oceanica|type=mRNA|length=299bp|location=Sequence derived from alignment at scaffold_55:97210..97508- (Nannochloropsis oceanica)
GGGAGCAAGAGCAACCCCCTGGCCATGGCCATCGGCTTCACGGCCTTCTT
CGCCCTGTGGTTCTTCAACACCCTCCGGAGGGTGAGCATGCAGGGAGTGG
GGGGGACGGGAGGGGAGGAGAGAGGAAGGAAGAAGCTCCGTAAAGTGGGT
GAAACTCCTTCACCTTCCTCAGGTGATCCTTCCCTCCCAGCCCCAGTCCA
AGCTCCAGCATCGGTCGACTTGGACAGGCGAGCCTGCCTCTTGAGCCACC
TCCGCTGATCCTTTTCCTTCATTCCCTCCTTCCCCCCCTCCCTCCCTTC
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Coding sequence (CDS) from alignment at scaffold_55:97210..97508-

>mRNA_10396 ID=mRNA_10396|Name=jgi.p|Nanoce1779_2|611346|organism=Nannochloropsis oceanica|type=CDS|length=234bp|location=Sequence derived from alignment at scaffold_55:97210..97508- (Nannochloropsis oceanica)
ATGGCCATCGGCTTCACGGCCTTCTTCGCCCTGTGGTTCTTCAACACCCT
CCGGAGGGTGAGCATGCAGGGAGTGGGGGGGACGGGAGGGGAGGAGAGAG
GAAGGAAGAAGCTCCGTAAAGTGGGTGAAACTCCTTCACCTTCCTCAGGT
GATCCTTCCCTCCCAGCCCCAGTCCAAGCTCCAGCATCGGTCGACTTGGA
CAGGCGAGCCTGCCTCTTGAGCCACCTCCGCTGA
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Synonyms
Publications