jgi.p|Nanoce1779_2|611320, mRNA_10393 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|611320
Unique Name	mRNA_10393
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1712
Alignment location	scaffold_55:84754..86617 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	611406
Track	FilteredModels2
ProteinId	611320

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_55	supercontig	scaffold_55:84754..86617 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611320	gene_10393	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611320	mRNA_10393-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10393	CDS_10393	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_55:84754..86617+
coding sequence from alignment at scaffold_55:84754..86617+

mRNA sequence

>mRNA_10393 ID=mRNA_10393|Name=jgi.p|Nanoce1779_2|611320|organism=Nannochloropsis oceanica|type=mRNA|length=1712bp
CCTCCCTCCCTCCCACTTTCCCTTCCTCTCATGTTCACCTCTCGTTCTTT
TCACCCTCTTCCTTTCGTAATTTTTATGGTCTCTCATAACCCATCCACCC
TCCTCTCCTCTCTCCAGCCCGGGTTCCGGCTTACCAATCCCGCATATGGG
CCGAAGCCACCGCCAAGGGCGTCTTTCCTTCCTCCTCCTCATCTACCTCC
ATCTCCACCTCCTCCTCCTCCTCTTCCTCGAGCGAATCAACAAAGGAAGA
GGGCGAGACGGAGGGAGGGAGCACGCCAGCCGCCTCTTCCGCCTTGGGGA
GGCTGCACTACACCGACGTGCAAGCTTTGCCCTTCACGGTCGCCCTCCTC
AACGAGACCCTGCGTCTCTTTCCCCCCCACTCCACCATCATCCGCCGGAC
ACCCTGTGCCATGTCGATCGACCTCCCTTCCTCTCTCCCTCCTTCCCTCC
CCCTCAACCTGGACCTGTCAACCTCCACCCCTCGCCCTCCGGCCCTCCCT
CAGACGCCTTCAGCCTTGCGAACGCCCCGATCCTCGCGGCCCACCACCCC
CTCTCTCTTCACTCCCTCCCATGCCCGGGGTCTGCAGAGAGGTTTCTCGC
ACCTCCCTCCCGTCCACACCCTCCCTCCCGGCACCAATCTCACTCTCTGC
CTGCTTGGCCTGCATACAGACGGGCGCTTTTACACTTCCCCCTTCTCCTT
CCTCCCTGAGCGCTGGCTGGAGGGAAAGGAGGAGGAGGAGGAGGGCGGGA
GGGATGGAGGCGTGAAGGAGGAGTGCCCGCAGGTGGTAGAGAAATCAAGC
TCAGCCTCCAACTCCTCGTCGAAGGAGGGAGATAAGGAAGAAGAGGGAGA
GGGGGGAGTGGCCCCGACTAGGCTGTCGTTGCCGCCCTTGTCTTTGTCGG
CGATCGAGGAGGGGTTGAGTGGGGGGGACGAGGAAGAGGGCGAGGGGGAG
GACGAAGAGTACCAGCGTTTCGTACAAGTGAAAGTGTTAACGGCTGTATT
GTTGGTGGTACAGCACTATAAGGTGGGAAGGGTAGGGAAGGAGGGTGGGA
GGGAGGAAGAGAGGGGAGTGGAGGAGTGGGTGGGCGATTACTTGAAGGGC
AAGTATCGGATATGGAAGGTCACGCTGACCCCGAGGCGTGTACGTTAAAT
TTAGGGGGAGGGGAGTAGAAAAGGGAGCGATAGAGAGGGCGAATAGTCTT
CTTTTTAGGTGAAGACTGGGGCTTGCATGTACTGATTGGGGAAGGAAGAA
AGGAAGGGCTCCGCGTGTAATTTAAGACACAAACATGCGGCGGGCCTTAT
TTGGATTTTTGCGAAAGACTGACTTTGATTGCTTTGAGGGCGGGAGGGAG
GAAGGACTGGAGGGAGGGAATGAAAGATTGAATGAAGGACGTGATTAAGA
CAGTGTGTGGGGTGTGTAAACAGAGACCATCCTGCAGACATTTACTCTGA
CCGTCAAGCAAACAGAAGTAAAATTAGAAAAGGAGGCGGGGAAGAATTAT
AATTAGAAAAGGAAAGAAAGGCAGGCTGATGATGATTGTTTTTCCTGGCG
TGACTCTGCGTGGCACGGTATGGCGTGTGCGTGAATAAGATGGAGAAGGA
TTAGAAGGATAGGGTTAATCCCGACCCTATTAAACCCCCGAGTGAGGGTT
CGGTCAGGTCTTGAAGTTAGAGACCTGAGCCCAAAGAATTTTAACACGAC
AAGTAAGAGACA

protein sequence of jgi.p|Nanoce1779_2|611320

>mRNA_10393-protein ID=mRNA_10393-protein|Name=jgi.p|Nanoce1779_2|611320|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MSIDLPSSLPPSLPLNLDLSTSTPRPPALPQTPSALRTPRSSRPTTPSLF
TPSHARGLQRGFSHLPPVHTLPPGTNLTLCLLGLHTDGRFYTSPFSFLPE
RWLEGKEEEEEGGRDGGVKEECPQVVEKSSSASNSSSKEGDKEEEGEGGV
APTRLSLPPLSLSAIEEGLSGGDEEEGEGEDEEYQRFVQVKVLTAVLLVV
QHYKVGRVGKEGGREEERGVEEWVGDYLKGKYRIWKVTLTPRRVR*

mRNA from alignment at scaffold_55:84754..86617+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10393 ID=mRNA_10393|Name=jgi.p|Nanoce1779_2|611320|organism=Nannochloropsis oceanica|type=mRNA|length=1864bp|location=Sequence derived from alignment at scaffold_55:84754..86617+ (Nannochloropsis oceanica)
CCTCCCTCCCTCCCACTTTCCCTTCCTCTCATGTTCACCTCTCGTTCTTT
TCACCCTCTTCCTTTCGTAATTTTTATGGTCTCTCATAACCCATCCACCC
TCCTCTCCTCTCTCCAGCCCGGGTTCCGGCTTACCAATCCCGCATATGGG
CCGAAGCCACCGCCAAGGGCGTCTTTCCTTCCTCCTCCTCATCTACCTCC
ATCTCCACCTCCTCCTCCTCCTCTTCCTCGAGCGAATCAACAAAGGAAGA
GGGCGAGACGGAGGGAGGGAGCACGCCAGCCGCCTCTTCCGCCTTGGGGA
GGCTGCACTACACCGACGTGCAAGCTTTGCCCTTCACGGTCGCCCTCCTC
AACGAGACCCTGCGTCTCTTTCCCCCCCACTCCACCATCATCCGCCGGAC
ACCCTGTGCCATGTCGATCGACCTCCCTTCCTCTCTCCCTCCTTCCCTCC
CCCTCAACCTGGACCTGTCAACCTCCACCCCTCGCCCTCCGGCCCTCCCT
CAGACGCCTTCAGCCTTGCGAACGCCCCGATCCTCGCGGCCCACCACCCC
CTCTCTCTTCACTCCCTCCCATGCCCGGGGTCTGCAGAGAGGTATATCTC
CCTCCTCCTTCTTCCCAACCCCCCACCTCTTTTTTTTTTCCTCCCTCGCG
GCACCACGCTCACTTTTTCCCTGCTCCCTTGCTCACCCTCACCTACTTTC
CCTCCCCGCCTCCCTTTCTCTCCCTAGGTTTCTCGCACCTCCCTCCCGTC
CACACCCTCCCTCCCGGCACCAATCTCACTCTCTGCCTGCTTGGCCTGCA
TACAGACGGGCGCTTTTACACTTCCCCCTTCTCCTTCCTCCCTGAGCGCT
GGCTGGAGGGAAAGGAGGAGGAGGAGGAGGGCGGGAGGGATGGAGGCGTG
AAGGAGGAGTGCCCGCAGGTGGTAGAGAAATCAAGCTCAGCCTCCAACTC
CTCGTCGAAGGAGGGAGATAAGGAAGAAGAGGGAGAGGGGGGAGTGGCCC
CGACTAGGCTGTCGTTGCCGCCCTTGTCTTTGTCGGCGATCGAGGAGGGG
TTGAGTGGGGGGGTGCGGGGGGGGGGAGGACGAGGAAGAGGGCGAGGGGG
AGGACGAAGAGTACCAGCGTTTCGTACAAGTGAAAGTGTTAACGGCTGTA
TTGTTGGTGGTACAGCACTATAAGGTGGGAAGGGTAGGGAAGGAGGGTGG
GAGGGAGGAAGAGAGGGGAGTGGAGGAGTGGGTGGGCGATTACTTGAAGG
GCAAGTATCGGATATGGAAGGTCACGCTGACCCCGAGGCGTGTACGTTAA
ATTTAGGGGGAGGGGAGTAGAAAAGGGAGCGATAGAGAGGGCGAATAGTC
TTCTTTTTAGGTGAAGACTGGGGCTTGCATGTACTGATTGGGGAAGGAAG
AAAGGAAGGGCTCCGCGTGTAATTTAAGACACAAACATGCGGCGGGCCTT
ATTTGGATTTTTGCGAAAGACTGACTTTGATTGCTTTGAGGGCGGGAGGG
AGGAAGGACTGGAGGGAGGGAATGAAAGATTGAATGAAGGACGTGATTAA
GACAGTGTGTGGGGTGTGTAAACAGAGACCATCCTGCAGACATTTACTCT
GACCGTCAAGCAAACAGAAGTAAAATTAGAAAAGGAGGCGGGGAAGAATT
ATAATTAGAAAAGGAAAGAAAGGCAGGCTGATGATGATTGTTTTTCCTGG
CGTGACTCTGCGTGGCACGGTATGGCGTGTGCGTGAATAAGATGGAGAAG
GATTAGAAGGATAGGGTTAATCCCGACCCTATTAAACCCCCGAGTGAGGG
TTCGGTCAGGTCTTGAAGTTAGAGACCTGAGCCCAAAGAATTTTAACACG
ACAAGTAAGAGACA

Coding sequence (CDS) from alignment at scaffold_55:84754..86617+

>mRNA_10393 ID=mRNA_10393|Name=jgi.p|Nanoce1779_2|611320|organism=Nannochloropsis oceanica|type=CDS|length=2214bp|location=Sequence derived from alignment at scaffold_55:84754..86617+ (Nannochloropsis oceanica)
ATGTCGATCGACCTCCCTTCCTCTCTCCCTCCTTCCCTCCCCCTCAACCT
GGACCTGTCAACCTCCACCCCTCGCCCTCCGGCCCTCCCTCAGACGCCTT
CAGCCTTGCGAACGCCCCGATCCTCGCGGCCCACCACCCCCTCTCTCTTC
ACTCCCTCCCATGCCCGGGGTCTGCAGAGAGGTTTCTCGCACCTCCCTCC
CGTCCACACCCTCCCTCCCGGCACCAATCTCACTCTCTGCCTGCTTGGCC
TGCATACAGACGGGCGCTTTTACACTTCCCCCTTCTCCTTCCTCCCTGAG
CGCTGGCTGGAGGGAAAGGAGGAGGAGGAGGAGGGCGGGAGGGATGGAGG
CGTGAAGGAGGAGTGCCCGCAGGTGGTAGAGAAATCAAGCTCAGCCTCCA
ACTCCTCGTCGAAGGAGGGAGATAAGGAAGAAGAGGGAGAGGGGGGAGTG
GCCCCGACTAGGCTGTCGTTGCCGCCCTTGTCTTTGTCGGCGATCGAGGA
GGGGTTGAGTGGGGGGGACGAGGAAGAGGGCGAGGGGGAGGACGAAGAGT
ACCAGCGTTTCGTACAAGTGAAAGTGTTAACGGCTGTATTGTTGGTGGTA
CAGCACTATAAGGTGGGAAGGGTAGGGAAGGAGGGTGGGAGGGAGGAAGA
GAGGGGAGTGGAGGAGTGGGTGGGCGATTACTTGAAGGGCAAGTATCGGA
TATGGAAGGTCACGCTGACCCCGAGGCGTGTACGTTAAATGTCGATCGAC
CTCCCTTCCTCTCTCCCTCCTTCCCTCCCCCTCAACCTGGACCTGTCAAC
CTCCACCCCTCGCCCTCCGGCCCTCCCTCAGACGCCTTCAGCCTTGCGAA
CGCCCCGATCCTCGCGGCCCACCACCCCCTCTCTCTTCACTCCCTCCCAT
GCCCGGGGTCTGCAGAGAGGTTTCTCGCACCTCCCTCCCGTCCACACCCT
CCCTCCCGGCACCAATCTCACTCTCTGCCTGCTTGGCCTGCATACAGACG
GGCGCTTTTACACTTCCCCCTTCTCCTTCCTCCCTGAGCGCTGGCTGGAG
GGAAAGGAGGAGGAGGAGGAGGGCGGGAGGGATGGAGGCGTGAAGGAGGA
GTGCCCGCAGGTGGTAGAGAAATCAAGCTCAGCCTCCAACTCCTCGTCGA
AGGAGGGAGATAAGGAAGAAGAGGGAGAGGGGGGAGTGGCCCCGACTAGG
CTGTCGTTGCCGCCCTTGTCTTTGTCGGCGATCGAGGAGGGGTTGAGTGG
GGGGGACGAGGAAGAGGGCGAGGGGGAGGACGAAGAGTACCAGCGTTTCG
TACAAGTGAAAGTGTTAACGGCTGTATTGTTGGTGGTACAGCACTATAAG
GTGGGAAGGGTAGGGAAGGAGGGTGGGAGGGAGGAAGAGAGGGGAGTGGA
GGAGTGGGTGGGCGATTACTTGAAGGGCAAGTATCGGATATGGAAGGTCA
CGCTGACCCCGAGGCGTGTACGTTAAATGTCGATCGACCTCCCTTCCTCT
CTCCCTCCTTCCCTCCCCCTCAACCTGGACCTGTCAACCTCCACCCCTCG
CCCTCCGGCCCTCCCTCAGACGCCTTCAGCCTTGCGAACGCCCCGATCCT
CGCGGCCCACCACCCCCTCTCTCTTCACTCCCTCCCATGCCCGGGGTCTG
CAGAGAGGTTTCTCGCACCTCCCTCCCGTCCACACCCTCCCTCCCGGCAC
CAATCTCACTCTCTGCCTGCTTGGCCTGCATACAGACGGGCGCTTTTACA
CTTCCCCCTTCTCCTTCCTCCCTGAGCGCTGGCTGGAGGGAAAGGAGGAG
GAGGAGGAGGGCGGGAGGGATGGAGGCGTGAAGGAGGAGTGCCCGCAGGT
GGTAGAGAAATCAAGCTCAGCCTCCAACTCCTCGTCGAAGGAGGGAGATA
AGGAAGAAGAGGGAGAGGGGGGAGTGGCCCCGACTAGGCTGTCGTTGCCG
CCCTTGTCTTTGTCGGCGATCGAGGAGGGGTTGAGTGGGGGGGACGAGGA
AGAGGGCGAGGGGGAGGACGAAGAGTACCAGCGTTTCGTACAAGTGAAAG
TGTTAACGGCTGTATTGTTGGTGGTACAGCACTATAAGGTGGGAAGGGTA
GGGAAGGAGGGTGGGAGGGAGGAAGAGAGGGGAGTGGAGGAGTGGGTGGG
CGATTACTTGAAGGGCAAGTATCGGATATGGAAGGTCACGCTGACCCCGA
GGCGTGTACGTTAA

Synonyms

Publications