jgi.p|Nanoce1779_2|351308, mRNA_10392 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|351308
Unique NamemRNA_10392
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length912
Alignment locationscaffold_55:81618..83339 +

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Properties
Property NameValue
TranscriptId351394
TrackFilteredModels2
ProteinId351308
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_55supercontigscaffold_55:81618..83339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|351308gene_10392Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|351308mRNA_10392-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10392CDS_10392Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10392 ID=mRNA_10392|Name=jgi.p|Nanoce1779_2|351308|organism=Nannochloropsis oceanica|type=mRNA|length=912bp
GTTGAATTGATGCATTATGCTGCCCGGCCTTTTCCTTCCTTTATTGAGTC
CAGTCCCGGACTGACGGACACTCACAGTGGTCACAATGCCAGGATCGACC
GAAACTCGTCTCTATATCATCATACACACCCATGGCTGCATGCTGCACTT
TCCTTCCAGAGCGTCGTCTTGTCATCTTCACACTCATACTCTTCCCAATC
CCACACCGCAGGATGCCAAACACGCTTTCCTTCGTGCCGGTGGCAGTGCC
CATCCTGGGCTGGCTGCTAGCCATGCTTCTAATTTTTGTCGTCCACTTTC
TTGCTTCCTGGCGACGGCGCTCTCATCTCGTTGGCCACCTTCCCAAGGTT
TTCTTATGGATTGATCCCCGCTCATTTCTGGCCTCCTTGCTCCGGCAGAA
GTGGAACGCTGAGAGTTTCGACCGCTTGGTGCTGGAAGAGTTCGAGAAGC
GAGACTACCCCCCAGTCATAGTCATCATAGGTCCCTTACCCTGGGTGGCG
CCGAGCTTCATCTCCAACGACGCAACTCTCATTACCGAGATGCTCTTGCT
AGGAAACAAGGCGCAAATGAAGAAGGTGGGGATGAGGGACGAGCCCCCCC
TAGCGCCCTTCAACCAGGCGGTCTGCACCACCACCCGCCACGCCCTGTGC
TCGAGAATGAAGGAGTGGGAGAGAAAAAGAGGCTTGATGGCCAAGAAGCG
GAAACTGCGCCTCGAACAGTGAGTGCCTTGTGCCCGCCCTCCTTCCCACC
CTCCGCCCCTACCTCAACTTTTGGGCTTTTTGCTTCTTGAAGGACGAAGC
ATTAAGTGCTCCCTCCCTTTCTCCCTCCCTCCTTCCCTCCCTCCGTTCCT
CAGCCGCAGGATCTTCTTCCCACCCCCCGCAGCGCTTTCAAGGAGGAAGG
CGAGATGGAGGG
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protein sequence of jgi.p|Nanoce1779_2|351308

>mRNA_10392-protein ID=mRNA_10392-protein|Name=jgi.p|Nanoce1779_2|351308|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MAACCTFLPERRLVIFTLILFPIPHRRMPNTLSFVPVAVPILGWLLAMLL
IFVVHFLASWRRRSHLVGHLPKVFLWIDPRSFLASLLRQKWNAESFDRLV
LEEFEKRDYPPVIVIIGPLPWVAPSFISNDATLITEMLLLGNKAQMKKVG
MRDEPPLAPFNQAVCTTTRHALCSRMKEWERKRGLMAKKRKLRLEQ*
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mRNA from alignment at scaffold_55:81618..83339+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10392 ID=mRNA_10392|Name=jgi.p|Nanoce1779_2|351308|organism=Nannochloropsis oceanica|type=mRNA|length=1722bp|location=Sequence derived from alignment at scaffold_55:81618..83339+ (Nannochloropsis oceanica)
GTTGAATTGATGCATTATGCTGCCCGGCCTTTTCCTTCCTTTATTGAGTC
CAGTCCCGGACTGACGGACACTCACAGTGGTCACAATGCCAGGATCGACC
GAAACTCGTCTCTATATCATCATACACACCCATGGCTGCATGCTGCACTT
TCCTTCCAGAGCGTCGTCTTGTCATCTTCACACTCATACTCTTCCCAATC
CCACACCGCAGGATGCCAAACACGCTTTCCTTCGTGCCGGTGGCAGTGCC
CATCCTGGGCTGGCTGCTAGCCATGCTTCTAATTTTTGTCGTCCACTTTC
TTGCTTCCTGGCGACGGCGCTCTCATCTCGTTGGCCACCTTCCCAAGGTA
TGTATTAATCGAGAGCAAGGGCTGTAACAAGAGAGCATCGGGAGATCTCT
TGGGAAACGCAATTTGTAAGAAGGGAAGCCTCGAGGGAGCACGGGGACAG
GGCGTCTACGACAGGCGTTGATTAAGGCCCAATCGGGCTTTTGATACATG
ATAAATGTTTCCCTCCCTCCTGTCCTTTCCTCCCAACTTCCCTGCGACCA
GGTTTTCTTATGGATTGATCCCCGCTCATTTCTGGCCTCCTTGCTCCGGC
AGAAGTGGAACGCTGAGAGTTTCGACCGGTATGGGGGACGAGAGGAGGGA
AGGAGGGAGGGGGGAAGGGAGGAATGGGGGCATGGCTTGGAACAGGGGGC
GCAGCAGTTCGCCTCAAAGCGAGCGACAAGTTGCTAAGTGAAGGCAAAGT
ATATTCGTCCAGATTACTTTTTGTCTGGTTTTCTCCAATCATTATTCTGC
GCTGCGAGACATTCGTCTTCTCCATCCCTCCCTCCCCCCCTGCCTCCCTC
CCTCCACAGCTTGGTGCTGGAAGAGTTCGAGAAGCGAGACTACCCCCCAG
TCATAGTCATCATAGGTCCCTTACCCTGGGTGGCGCCGAGCTTCATCTCC
AACGACGCAACTCTCATTACCGAGATGCTCTTGCTAGGAAACAAGGTTCG
TTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCTCCCTGTCCGCTCTC
AAAGCACTGAATTTCGACCACCCTCCCTCTCTCTCCTCCATCCTTCCTCC
CTTCCCTCTCCCAGGCGCAAATGAAGAAGGTGGGGATGAGGGACGAGCCC
CCCCTAGCGCCCTTCAACCAGGCGGTCTGCACCACCACCCGCCACGCCCT
GTGCTCGAGAATGAAGGAGTGGGAGAGAAAAAGAGGCTTGATGGCCAAGA
AGCGGAAACTGCGCCTCGAACAGTGAGTGCCTTGTGCCCGCCCTCCTTCC
CACCCTCCGCCCCTACCTCAACTTTTGGGCTTTTTGCTTCTTGAAGGACG
AAGCATTAAGTGCTCCCTCCCTTTCTCCCTCCCTCCTTCCCTCCCTCCGT
TCCTCAGGTACTTCACCGCGCGTTCTGGCTCGTTATTTATCAATCTGGAG
GATGAATTAAGACGGCAGCTGCAGCTCTATCAGCAGAACCCGCAGCAGCA
GCAGCAGGCAGACGACTCTGGGGTTGATGGCAGCCTCCCTGCCACAGTGC
GTAGGCTTCCTTGCCCTCCCTCTTTCCTTCTTTCTTTCTATCCATTGAAT
TGCTCTCATCCTTCCCTCATCTGGTCTGTCCCTTTCTCGCTCCCTCCCTC
CCTTCTCCTCCAGCCGCAGGATCTTCTTCCCACCCCCCGCAGCGCTTTCA
AGGAGGAAGGCGAGATGGAGGG
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Coding sequence (CDS) from alignment at scaffold_55:81618..83339+

>mRNA_10392 ID=mRNA_10392|Name=jgi.p|Nanoce1779_2|351308|organism=Nannochloropsis oceanica|type=CDS|length=2364bp|location=Sequence derived from alignment at scaffold_55:81618..83339+ (Nannochloropsis oceanica)
ATGGCTGCATGCTGCACTTTCCTTCCAGAGCGTCGTCTTGTCATCTTCAC
ACTCATACTCTTCCCAATCCCACACCGCAGGATGCCAAACACGCTTTCCT
TCGTGCCGGTGGCAGTGCCCATCCTGGGCTGGCTGCTAGCCATGCTTCTA
ATTTTTGTCGTCCACTTTCTTGCTTCCTGGCGACGGCGCTCTCATCTCGT
TGGCCACCTTCCCAAGGTTTTCTTATGGATTGATCCCCGCTCATTTCTGG
CCTCCTTGCTCCGGCAGAAGTGGAACGCTGAGAGTTTCGACCGCTTGGTG
CTGGAAGAGTTCGAGAAGCGAGACTACCCCCCAGTCATAGTCATCATAGG
TCCCTTACCCTGGGTGGCGCCGAGCTTCATCTCCAACGACGCAACTCTCA
TTACCGAGATGCTCTTGCTAGGAAACAAGGCGCAAATGAAGAAGGTGGGG
ATGAGGGACGAGCCCCCCCTAGCGCCCTTCAACCAGGCGGTCTGCACCAC
CACCCGCCACGCCCTGTGCTCGAGAATGAAGGAGTGGGAGAGAAAAAGAG
GCTTGATGGCCAAGAAGCGGAAACTGCGCCTCGAACAGTGAATGGCTGCA
TGCTGCACTTTCCTTCCAGAGCGTCGTCTTGTCATCTTCACACTCATACT
CTTCCCAATCCCACACCGCAGGATGCCAAACACGCTTTCCTTCGTGCCGG
TGGCAGTGCCCATCCTGGGCTGGCTGCTAGCCATGCTTCTAATTTTTGTC
GTCCACTTTCTTGCTTCCTGGCGACGGCGCTCTCATCTCGTTGGCCACCT
TCCCAAGGTTTTCTTATGGATTGATCCCCGCTCATTTCTGGCCTCCTTGC
TCCGGCAGAAGTGGAACGCTGAGAGTTTCGACCGCTTGGTGCTGGAAGAG
TTCGAGAAGCGAGACTACCCCCCAGTCATAGTCATCATAGGTCCCTTACC
CTGGGTGGCGCCGAGCTTCATCTCCAACGACGCAACTCTCATTACCGAGA
TGCTCTTGCTAGGAAACAAGGCGCAAATGAAGAAGGTGGGGATGAGGGAC
GAGCCCCCCCTAGCGCCCTTCAACCAGGCGGTCTGCACCACCACCCGCCA
CGCCCTGTGCTCGAGAATGAAGGAGTGGGAGAGAAAAAGAGGCTTGATGG
CCAAGAAGCGGAAACTGCGCCTCGAACAGTGAATGGCTGCATGCTGCACT
TTCCTTCCAGAGCGTCGTCTTGTCATCTTCACACTCATACTCTTCCCAAT
CCCACACCGCAGGATGCCAAACACGCTTTCCTTCGTGCCGGTGGCAGTGC
CCATCCTGGGCTGGCTGCTAGCCATGCTTCTAATTTTTGTCGTCCACTTT
CTTGCTTCCTGGCGACGGCGCTCTCATCTCGTTGGCCACCTTCCCAAGGT
TTTCTTATGGATTGATCCCCGCTCATTTCTGGCCTCCTTGCTCCGGCAGA
AGTGGAACGCTGAGAGTTTCGACCGCTTGGTGCTGGAAGAGTTCGAGAAG
CGAGACTACCCCCCAGTCATAGTCATCATAGGTCCCTTACCCTGGGTGGC
GCCGAGCTTCATCTCCAACGACGCAACTCTCATTACCGAGATGCTCTTGC
TAGGAAACAAGGCGCAAATGAAGAAGGTGGGGATGAGGGACGAGCCCCCC
CTAGCGCCCTTCAACCAGGCGGTCTGCACCACCACCCGCCACGCCCTGTG
CTCGAGAATGAAGGAGTGGGAGAGAAAAAGAGGCTTGATGGCCAAGAAGC
GGAAACTGCGCCTCGAACAGTGAATGGCTGCATGCTGCACTTTCCTTCCA
GAGCGTCGTCTTGTCATCTTCACACTCATACTCTTCCCAATCCCACACCG
CAGGATGCCAAACACGCTTTCCTTCGTGCCGGTGGCAGTGCCCATCCTGG
GCTGGCTGCTAGCCATGCTTCTAATTTTTGTCGTCCACTTTCTTGCTTCC
TGGCGACGGCGCTCTCATCTCGTTGGCCACCTTCCCAAGGTTTTCTTATG
GATTGATCCCCGCTCATTTCTGGCCTCCTTGCTCCGGCAGAAGTGGAACG
CTGAGAGTTTCGACCGCTTGGTGCTGGAAGAGTTCGAGAAGCGAGACTAC
CCCCCAGTCATAGTCATCATAGGTCCCTTACCCTGGGTGGCGCCGAGCTT
CATCTCCAACGACGCAACTCTCATTACCGAGATGCTCTTGCTAGGAAACA
AGGCGCAAATGAAGAAGGTGGGGATGAGGGACGAGCCCCCCCTAGCGCCC
TTCAACCAGGCGGTCTGCACCACCACCCGCCACGCCCTGTGCTCGAGAAT
GAAGGAGTGGGAGAGAAAAAGAGGCTTGATGGCCAAGAAGCGGAAACTGC
GCCTCGAACAGTGA
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Synonyms
Publications