jgi.p|Nanoce1779_2|611310, mRNA_10391 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|611310
Unique Name	mRNA_10391
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2110
Alignment location	scaffold_55:78391..81349 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	611396
Track	FilteredModels2
ProteinId	611310

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_55	supercontig	scaffold_55:78391..81349 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611310	gene_10391	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611310	mRNA_10391-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10391	CDS_10391	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_55:78391..81349+
coding sequence from alignment at scaffold_55:78391..81349+

mRNA sequence

>mRNA_10391 ID=mRNA_10391|Name=jgi.p|Nanoce1779_2|611310|organism=Nannochloropsis oceanica|type=mRNA|length=2110bp
AAGGCAGGTTGGAAGACGGGCAGGGAGGGCGAGCATCTTCTTTCCTGCCG
TCCTGGATAGGTACCATCGAGGATCAGGAGGTCGTGGGCGTCTCGGACTA
CGGAGCTATACTCTCCACCCCTCCCTCCTCCGCCGCCAGGACCCGCACCC
CCACCCCCTCGAAAGCAAAAAAAAAGGTTCTCCTAACGCCCGTGATGGTG
CTGCAAAGCGAGGAGGAGGGCGGGAGGGCGGGTGGGGAGGAGGAGGACAT
GTGGTCTTCTCCCTTTGAAGGCCTTTTCTCTCCTCGTCGTGGCTCCAGTC
TGTCGCCGAGCAAGGGAAAAAATCGAGTGCTCTTGACGCCCATCACCCCG
GAGAGGCAGAGGGAGGGGGGAGGATGGAAAGTGGAGGAGGAACAAGAGTG
GGAGCAGGCGGAGGAAGTGAAGGAGGAATGGGTGTCGAGGGAAAGGGGGG
AATTCAAGGACGATATGAGGTTTGTTGGAAGGAAGGGAGAGAGGGAGAGA
GGTAAAGGAAGTGAGAGAGAGCTATGCCACCCACGTCTCCTCTGCGGAAC
TGGACATTATGACGGAGGAGGGAGGAGGGGGCACTGACTGGTGGAAGCCT
TTGGCCCTCGGCGTCTGCTTCCTGGGCGTCATCGTCGCGGACGTGCTCAA
GGGTGGCAAAGGATCTCGCTCCCCCCTCGGCATCACCTGCGGTTCTCAAG
CTTACTGGCTGGTCATGCTGGCGACCTTGCCCTGGGTGGGAGTTTTCCTT
TACAAATTCCGACAATTTATCATGGAGGACTGCGCTGCTAAGCTACGGTC
AGGCTACAATATCCACATGCCGGGCGAGGTCTGGTGGACGCGGACAAAGG
CCGTGCAGGCCCATGGGCTCGGCGCCACCGCGGGCCTGGCCGCTGGTGTC
GTCGGTATAGGCGACATTATGATTGAAGACATTCTCCTGCTCAAAATGGG
CGTCCTACCTGCCGTGGCCGCCGCTTCAGCCGCTGTTTTGATCCTGTACA
CTGCTGCTGCTGCTGCTGCTGCTTTCTGTGTCTTTGGACAGCTGTCAAGA
GATTACGGCGCCCTTTTCTTTGTGTGGGGATTGGGATGTACGCTAGTGGG
GCGCATGGTCGTCAGTCGTATGGTAAGGCAGCATAACAGGGAGAGTTTAA
TTCTCTTGTCGATTGGGGCCGCTACTTTGTTGAGTGTGATTATGATGGGT
CGGGAGGGGATTCGAGAATACACCCGAGATACGGCTAAGGCTGTCAGGAT
GTCGTCTATGTGTGAATAAGAAGGAAAATAATTAAGTCGATTTTGTGGTC
GGCGAGAGATCGAGACTACAGTAGTTGAAGCTGGAAGGGGAGCAAGTCAG
AGGGAGAAAAAATATGAGCTTTGACAGCGGGAGCGGCAGGAAAAAACCAA
ATAGCTTACCATCATAACCATGGTCAGAATTCGAGTGAAAGAGGGTGAAA
AGCTAGCGATGAAAGAGGAAAGAAAAGCAGGCGAAAGAAATAGGAAAGGC
CGCAAGTTTTCTGAAAAAGACAAAAAAGGAATGCATTGTAAAGGAGAAGT
TATGTGTCATGACCTGCCCGTACGATGATTTCGTTCATATGCTACATATT
GTACTAAAGAGGTAAATCAAAGAAAGAAATGGATTTTGTCCTTTAAAGCC
TTGGAAGCCTTTTTGGCCGGTAGCGTGGTGCTGATGAGACAAGGATACTT
GATGGATCGGGGGGATGAGGAGGTCTAAAACAAGCAAAAGACTCGACGAT
GAAATGTCATTAAGCATGGCATGCTAGAATGAAAGCTCTGAAAGCAAGTT
TGGGAGCGACCTCGCAGATATCAATCATCCACCTCCCTTTCCGACGACTT
CTTCAAGCGACGTACGCTTGCTTGCTTCCAACTTCTGGAATAATTCCGAG
ACAACATCAACTTGGTGTTCCCCCTGGTACTACCTATCTCCACTTCAATT
TATGTATGTCCCTGCCTCGTACCATTGCGCCGTTATAAATGTACAATACC
AAATCGGCTCAAATCAAGCCATAGATGGGTCGTCAGCTGTGCGGAGTGCA
AGAATCAGTCGATTGAATCTCAATGTCATGCCTCGCTCGCCGACGCGTTT
TTTGGTAAGA

protein sequence of jgi.p|Nanoce1779_2|611310

>mRNA_10391-protein ID=mRNA_10391-protein|Name=jgi.p|Nanoce1779_2|611310|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MTEEGGGGTDWWKPLALGVCFLGVIVADVLKGGKGSRSPLGITCGSQAYW
LVMLATLPWVGVFLYKFRQFIMEDCAAKLRSGYNIHMPGEVWWTRTKAVQ
AHGLGATAGLAAGVVGIGDIMIEDILLLKMGVLPAVAAASAAVLILYTAA
AAAAAFCVFGQLSRDYGALFFVWGLGCTLVGRMVVSRMVRQHNRESLILL
SIGAATLLSVIMMGREGIREYTRDTAKAVRMSSMCE*

mRNA from alignment at scaffold_55:78391..81349+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10391 ID=mRNA_10391|Name=jgi.p|Nanoce1779_2|611310|organism=Nannochloropsis oceanica|type=mRNA|length=2959bp|location=Sequence derived from alignment at scaffold_55:78391..81349+ (Nannochloropsis oceanica)
AAGGCAGGTTGGAAGACGGGCAGGGAGGGCGAGCATCTTCTTTCCTGCCG
TCCTGGATAGGTACCATCGAGGATCAGGTAGGGAGAGAGGGAGGAAGGGA
GGGATGGAGGGAGGGAGAGGGAGAAGGTCGGAGACATAAACCCAATATAC
AGGCGCATGCACTGTAAACAGAAGCACGCATCAGGTAATATCCTCTTTTT
TCCTCCGTCCTCTCGTCCCTCCCCGTCCCCACAGGAGGTCGTGGGCGTCT
CGGACTACGGAGCTATACTCTCCACCCCTCCCTCCTCCGCCGCCAGGACC
CGCACCCCCACCCCCTCGAAAGCAAAAAAAAAGGTTCTCCTAACGCCCGT
GATGGTGCTGCAAAGCGAGGAGGAGGGCGGGAGGGCGGGTGGGGAGGAGG
AGGACATGTGGTCTTCTCCCTTTGAAGGCCTTTTCTCTCCTCGTCGTGGC
TCCAGTCTGTCGCCGAGCAAGGGAAAAAATCGAGTGCTCTTGACGCCCAT
CACCCCGGAGAGGCAGAGGGAGGGGGGAGGATGGAAAGTGGAGGAGGAAC
AAGAGTGGGAGCAGGCGGAGGAAGTGAAGGAGGAATGGGTGTCGAGGGAA
AGGGGGGAATTCAAGGACGATATGAGGTTTGTTGGAAGGAAGGGAGAGAG
GGAGAGAGGTAAAGGAAGTGAGAGAGAGGCAAGTATGAAAAAGAGGAAGA
GGTCAAGAGTGCAGGGCACCGAGCTGATGGCTCATAACACGAATTCTTCC
CTCCCTCCCTTCTTCCCTCCCTCCCTTCTTCCCTCCATCCTCAGCTATGC
CACCCACGTCTCCTCTGCGGAACTGGACATTATGACGGAGGAGGGAGGAG
GGGGCACTGACTGGTGGAAGCCTTTGGCCCTCGGCGTCTGCTTCCTGGGC
GTCATCGTCGCGGACGTGCTCAAGGTACAGAGGCAGGGAAAGGGGAAGGG
CGGGCGGAACATTTATATGTTTTTTAGCCTTCTTTTCTTCTTGACCTTCT
TGCTCTCTGGCGGGAGAGCCCATTCACTTTTCGAGAATAATATTGCCCGT
CTGTTCACCTTTGATATTCTTCTCCTGCTTGACTGTCACAATCACCCCTT
CCTTTCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCTCCCCCTAGGGTG
GCAAAGGATCTCGCTCCCCCCTCGGCATCACCTGCGGTTCTCAAGCTTAC
TGGCTGGTCATGCTGGCGACCTTGCCCTGGGTGGGAGTTTTCCTTTACAA
ATTCCGACAATTTATCATGGAGGACTGCGCTGCTAAGGTAGGGAAGGAGG
AAAACGGGGAGGCGAGGGGGGGGAAGAGCCAAAAGATGGGAAGCAGTCGA
TTTCCTCATCCCCCTCCCCCCTCCCTCCCTCTCTCCCTTCTTGAAGCTAC
GGTCAGGCTACAATATCCACATGCCGGGCGAGGTCTGGTGGACGCGGACA
AAGGCCGTGCAGGCCCATGGGCTCGGCGCCACCGCGGTAGGAAAACAGAA
AAAGCGATGGAGGGAGGGGAGAGGGGATGGGCGGAAAGAGGAAGCGAAGG
GCGGGAGGGAGAGACTTAAAGTCATTGATAGAGAGAGCCTCGGTCCTTGT
GTCTTGTTCCATTTTCATACTGAAACCTTGACGAAATCACAGGGCCTGGC
CGCTGGTGTCGTCGGTATAGGCGACATTATGATTGAAGGTACGGAGGATT
CCTCCCCTCCTCCTGCCTCCTCCTTCCTCCCTCCACCTGAAACCCTTCCC
TTCCTTTCTCTTTTTTTCTTTTCACAGACATTCTCCTGCTCAAAATGGGC
GTCCTACCTGCCGTGGCCGCCGCTTCAGCCGCTGTTTTGATCCTGTACAC
TGCTGCTGCTGCTGCTGCTGCTTTCTGTGTCTTTGGACAGCTGTCAAGAG
ATTACGGCGCCCTTTTCTTTGTGTGGGGATTGGGATGTACGCTAGTGGGG
CGCATGGTCGTCAGTCGTATGGTAAGGCAGCATAACAGGGAGAGTTTAAT
TCTCTTGTCGATTGGGGCCGCTACTTTGTTGAGTGTGATTATGATGGGTC
GGGAGGGGATTCGAGAATACACCCGAGATACGGCTAAGGCTGTCAGGATG
TCGTCTATGTGTGAATAAGAAGGAAAATAATTAAGTCGATTTTGTGGTCG
GCGAGAGATCGAGACTACAGTAGTTGAAGCTGGAAGGGGAGCAAGTCAGA
GGGAGAAAAAATATGAGCTTTGACAGCGGGAGCGGCAGGAAAAAACCAAA
TAGCTTACCATCATAACCATGGTCAGAATTCGAGTGAAAGAGGGTGAAAA
GCTAGCGATGAAAGAGGAAAGAAAAGCAGGCGAAAGAAATAGGAAAGGCC
GCAAGTTTTCTGAAAAAGACAAAAAAGGAATGCATTGTAAAGGAGAAGTT
ATGTGTCATGACCTGCCCGTACGATGATTTCGTTCATATGCTACATATTG
TACTAAAGAGGTAAATCAAAGAAAGAAATGGATTTTGTCCTTTAAAGCCT
TGGAAGCCTTTTTGGCCGGTAGCGTGGTGCTGATGAGACAAGGATACTTG
ATGGATCGGGGGGATGAGGAGGTCTAAAACAAGCAAAAGACTCGACGATG
AAATGTCATTAAGCATGGCATGCTAGAATGAAAGCTCTGAAAGCAAGTTT
GGGAGCGACCTCGCAGATATCAATCATCCACCTCCCTTTCCGACGACTTC
TTCAAGCGACGTACGCTTGCTTGCTTCCAACTTCTGGAATAATTCCGAGA
CAACATCAACTTGGTGTTCCCCCTGGTACTACCTATCTCCACTTCAATTT
ATGTATGTCCCTGCCTCGTACCATTGCGCCGTTATAAATGTACAATACCA
AATCGGCTCAAATCAAGCCATAGATGGGTCGTCAGCTGTGCGGAGTGCAA
GAATCAGTCGATTGAATCTCAATGTCATGCCTCGCTCGCCGACGCGTTTT
TTGGTAAGA

Coding sequence (CDS) from alignment at scaffold_55:78391..81349+

>mRNA_10391 ID=mRNA_10391|Name=jgi.p|Nanoce1779_2|611310|organism=Nannochloropsis oceanica|type=CDS|length=3555bp|location=Sequence derived from alignment at scaffold_55:78391..81349+ (Nannochloropsis oceanica)
ATGACGGAGGAGGGAGGAGGGGGCACTGACTGGTGGAAGCCTTTGGCCCT
CGGCGTCTGCTTCCTGGGCGTCATCGTCGCGGACGTGCTCAAGGGTGGCA
AAGGATCTCGCTCCCCCCTCGGCATCACCTGCGGTTCTCAAGCTTACTGG
CTGGTCATGCTGGCGACCTTGCCCTGGGTGGGAGTTTTCCTTTACAAATT
CCGACAATTTATCATGGAGGACTGCGCTGCTAAGCTACGGTCAGGCTACA
ATATCCACATGCCGGGCGAGGTCTGGTGGACGCGGACAAAGGCCGTGCAG
GCCCATGGGCTCGGCGCCACCGCGGGCCTGGCCGCTGGTGTCGTCGGTAT
AGGCGACATTATGATTGAAGACATTCTCCTGCTCAAAATGGGCGTCCTAC
CTGCCGTGGCCGCCGCTTCAGCCGCTGTTTTGATCCTGTACACTGCTGCT
GCTGCTGCTGCTGCTTTCTGTGTCTTTGGACAGCTGTCAAGAGATTACGG
CGCCCTTTTCTTTGTGTGGGGATTGGGATGTACGCTAGTGGGGCGCATGG
TCGTCAGTCGTATGGTAAGGCAGCATAACAGGGAGAGTTTAATTCTCTTG
TCGATTGGGGCCGCTACTTTGTTGAGTGTGATTATGATGGGTCGGGAGGG
GATTCGAGAATACACCCGAGATACGGCTAAGGCTGTCAGGATGTCGTCTA
TGTGTGAATAAATGACGGAGGAGGGAGGAGGGGGCACTGACTGGTGGAAG
CCTTTGGCCCTCGGCGTCTGCTTCCTGGGCGTCATCGTCGCGGACGTGCT
CAAGGGTGGCAAAGGATCTCGCTCCCCCCTCGGCATCACCTGCGGTTCTC
AAGCTTACTGGCTGGTCATGCTGGCGACCTTGCCCTGGGTGGGAGTTTTC
CTTTACAAATTCCGACAATTTATCATGGAGGACTGCGCTGCTAAGCTACG
GTCAGGCTACAATATCCACATGCCGGGCGAGGTCTGGTGGACGCGGACAA
AGGCCGTGCAGGCCCATGGGCTCGGCGCCACCGCGGGCCTGGCCGCTGGT
GTCGTCGGTATAGGCGACATTATGATTGAAGACATTCTCCTGCTCAAAAT
GGGCGTCCTACCTGCCGTGGCCGCCGCTTCAGCCGCTGTTTTGATCCTGT
ACACTGCTGCTGCTGCTGCTGCTGCTTTCTGTGTCTTTGGACAGCTGTCA
AGAGATTACGGCGCCCTTTTCTTTGTGTGGGGATTGGGATGTACGCTAGT
GGGGCGCATGGTCGTCAGTCGTATGGTAAGGCAGCATAACAGGGAGAGTT
TAATTCTCTTGTCGATTGGGGCCGCTACTTTGTTGAGTGTGATTATGATG
GGTCGGGAGGGGATTCGAGAATACACCCGAGATACGGCTAAGGCTGTCAG
GATGTCGTCTATGTGTGAATAAATGACGGAGGAGGGAGGAGGGGGCACTG
ACTGGTGGAAGCCTTTGGCCCTCGGCGTCTGCTTCCTGGGCGTCATCGTC
GCGGACGTGCTCAAGGGTGGCAAAGGATCTCGCTCCCCCCTCGGCATCAC
CTGCGGTTCTCAAGCTTACTGGCTGGTCATGCTGGCGACCTTGCCCTGGG
TGGGAGTTTTCCTTTACAAATTCCGACAATTTATCATGGAGGACTGCGCT
GCTAAGCTACGGTCAGGCTACAATATCCACATGCCGGGCGAGGTCTGGTG
GACGCGGACAAAGGCCGTGCAGGCCCATGGGCTCGGCGCCACCGCGGGCC
TGGCCGCTGGTGTCGTCGGTATAGGCGACATTATGATTGAAGACATTCTC
CTGCTCAAAATGGGCGTCCTACCTGCCGTGGCCGCCGCTTCAGCCGCTGT
TTTGATCCTGTACACTGCTGCTGCTGCTGCTGCTGCTTTCTGTGTCTTTG
GACAGCTGTCAAGAGATTACGGCGCCCTTTTCTTTGTGTGGGGATTGGGA
TGTACGCTAGTGGGGCGCATGGTCGTCAGTCGTATGGTAAGGCAGCATAA
CAGGGAGAGTTTAATTCTCTTGTCGATTGGGGCCGCTACTTTGTTGAGTG
TGATTATGATGGGTCGGGAGGGGATTCGAGAATACACCCGAGATACGGCT
AAGGCTGTCAGGATGTCGTCTATGTGTGAATAAATGACGGAGGAGGGAGG
AGGGGGCACTGACTGGTGGAAGCCTTTGGCCCTCGGCGTCTGCTTCCTGG
GCGTCATCGTCGCGGACGTGCTCAAGGGTGGCAAAGGATCTCGCTCCCCC
CTCGGCATCACCTGCGGTTCTCAAGCTTACTGGCTGGTCATGCTGGCGAC
CTTGCCCTGGGTGGGAGTTTTCCTTTACAAATTCCGACAATTTATCATGG
AGGACTGCGCTGCTAAGCTACGGTCAGGCTACAATATCCACATGCCGGGC
GAGGTCTGGTGGACGCGGACAAAGGCCGTGCAGGCCCATGGGCTCGGCGC
CACCGCGGGCCTGGCCGCTGGTGTCGTCGGTATAGGCGACATTATGATTG
AAGACATTCTCCTGCTCAAAATGGGCGTCCTACCTGCCGTGGCCGCCGCT
TCAGCCGCTGTTTTGATCCTGTACACTGCTGCTGCTGCTGCTGCTGCTTT
CTGTGTCTTTGGACAGCTGTCAAGAGATTACGGCGCCCTTTTCTTTGTGT
GGGGATTGGGATGTACGCTAGTGGGGCGCATGGTCGTCAGTCGTATGGTA
AGGCAGCATAACAGGGAGAGTTTAATTCTCTTGTCGATTGGGGCCGCTAC
TTTGTTGAGTGTGATTATGATGGGTCGGGAGGGGATTCGAGAATACACCC
GAGATACGGCTAAGGCTGTCAGGATGTCGTCTATGTGTGAATAAATGACG
GAGGAGGGAGGAGGGGGCACTGACTGGTGGAAGCCTTTGGCCCTCGGCGT
CTGCTTCCTGGGCGTCATCGTCGCGGACGTGCTCAAGGGTGGCAAAGGAT
CTCGCTCCCCCCTCGGCATCACCTGCGGTTCTCAAGCTTACTGGCTGGTC
ATGCTGGCGACCTTGCCCTGGGTGGGAGTTTTCCTTTACAAATTCCGACA
ATTTATCATGGAGGACTGCGCTGCTAAGCTACGGTCAGGCTACAATATCC
ACATGCCGGGCGAGGTCTGGTGGACGCGGACAAAGGCCGTGCAGGCCCAT
GGGCTCGGCGCCACCGCGGGCCTGGCCGCTGGTGTCGTCGGTATAGGCGA
CATTATGATTGAAGACATTCTCCTGCTCAAAATGGGCGTCCTACCTGCCG
TGGCCGCCGCTTCAGCCGCTGTTTTGATCCTGTACACTGCTGCTGCTGCT
GCTGCTGCTTTCTGTGTCTTTGGACAGCTGTCAAGAGATTACGGCGCCCT
TTTCTTTGTGTGGGGATTGGGATGTACGCTAGTGGGGCGCATGGTCGTCA
GTCGTATGGTAAGGCAGCATAACAGGGAGAGTTTAATTCTCTTGTCGATT
GGGGCCGCTACTTTGTTGAGTGTGATTATGATGGGTCGGGAGGGGATTCG
AGAATACACCCGAGATACGGCTAAGGCTGTCAGGATGTCGTCTATGTGTG
AATAA

Synonyms

Publications