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Properties
| Property Name | Value |
|---|
| TranscriptId | 674876 |
| Track | FilteredModels2 |
| ProteinId | 674790 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_55 | supercontig | scaffold_55:66622..69240 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10386 ID=mRNA_10386|Name=jgi.p|Nanoce1779_2|674790|organism=Nannochloropsis oceanica|type=mRNA|length=2269bp
AACAGCGCACCACACCTGCACTGCACAGATAGCATGACAACCCCAGCCCC
GGCCGTCCCGGAGCAGGAATCTAAGGAAATTCGGGCTGAGTGGCGGGTGT
TTATTCCCGTGGCAACCAAACTTAGCCAGGAAACCCTTGGAGATGTGTTC
GACGGCCCCTATGACAAGCGGAAGGGAGATGGTATGGAGGGCCGGAGCGA
CATCTATATTGCTGTAAACCCGGCCATTGGCTTGAAGCGTCGCGGTGCCA
AGGGTCGCGTGGAGCTCAAACTCCTGACGGAAGACAGAAAGGAGGGGGAG
GAGGAAGACATCAAGGCGTCAAGCACCTACGGTCAATCCTCGTCTATAAC
TTCGACCATCACTTTTACGACCTCCCTCTATTTACACCAACAGATCGGGA
AGGGCCTGGCGGAGGAGGAGTCGCTCGCGCAAGTGCACACGTTGCTTGAG
GCTCACGGTTTGATTGACAGCCACGTCACTTCCCTTCTCGCCTCGGAGGA
CGGAACCAAGAGTGTGGAGGTTGCCAAGGTTCGTTTCTCTTTCAACTTTT
TCTGTACTCCATGTCCATGTTCCGGTTCAAATCTTCCTTCTCCTCATTGG
CTTCCACATGTATCTTTCTTCTTCACAAAGCTGCGTGTGGGTAAGGTCTA
TGAAGACCATGGAGTCCTTGTGGAGGACTGCCTGGTTGAAGCCGAGGGCA
AGCAATATCGCAGCTTCGCCGTAGAAGGGAACAAAGAGAAAGTGAAGGCT
TTTCTCTCTTCCCACGCTGTGGGGAAAAAAATGTATGAGCTGGCAATGAC
TCAGAAAGAGGCAGTCTTGCATGGCTATCCGAATTTTGTTTGCAAGTGTG
CGTGCCTCTAAGAAGTGGTGAAACGAGAAAGGTAAAGATGTAGGGTCCTC
ACGTTGGCGAGATAATGGAAAATCGGGCTTGCTAGAGTAGATTAGATCTA
TGTATTTGGTTAGATATGTCTTAATAGGGTAAGGGGTAGATACCTGATCG
TACCTATAAGGGAGAGGGAAGAGAATGTGTGGGGTCTCCGAACGCGTTTA
TGCGTCGGTTGTGTGAGTTGTTCCCATGATCTTAACCGAAAGACAAGGCC
GAAGATGCCAACTGTAATGACAGTTTAAATGAAATTCGATTTGTTTTACT
GGTCGCGACAAGAGCTTGATATCACACGCGTGTATTTCCTCATCGAAGTG
TTAAAAATTATCAATATCCACTAGACACTCCTTCACAGCTTTCTATTCTT
GACTCTAACAATCTACCTACATCTATCCGAGACAGAAATTCCACTTCCGT
TTCTTACTTTCTTTCAAGGTCTATCCAGCCTTTTCCCTCTCCTTCAACGC
ACCGATGCCGCGGCCGCCTTACTCACCTCTCCCATGATCTCACTGATCAT
TTCTTCCCCCGTGTTCGCCAGCGCCGACACCAAATCTGAACTGTTGTACA
CGGGCCGAGGCGCCCACAGCGGCGCAGTAAAGACACAGCCTATGATGAAC
AGGCGGAGAACCGTCGCTTCCATGCGCGAGTACCGACCAAAGAAACCATT
GAGAATTTTCATATCCTGTCGAAGCATCAACCAGAATCGCACCAAAAGAG
TAGCAACCAGAGAGGCCTCGCTCCGCCAGTACGTCCCCCTTGTGAGCGCT
AAAAGCATGGGCGATAAAGCCACCACGTCCAAAAGGGTCGCAAACATCTC
ACATGCCAGCAAGTAAGCTCCTTGCGCCAGGGTCAAGGACAAAACAGTCC
AAGCATAGGCCGGCATTTCGGTCAAAGGAGGAATGTCAAGCGGGTTTCGC
GGGATGCGCGTTGGGATGGTCAGCACGGTCCACAGGGCCATTAACTGCTG
GAACTCGCCTTCGATCGCCAAAAATGCCACCAGCTCCCGAAATGGCGCGG
ACCAGCCTGGATGAGTCAAGGCATACACGCCCATACCAAAGCCAGGAAAA
GCCCCCAAAATGGAAGCGGGAGTAGGGCTATGGAACACGCGGAGGAGGTC
CATAATTGTGCCTTCAACACCACGGGACACTCGCTCGATCCATCCCCAGG
AAGGGTACATGTACACGGTTGCCAGCAGCTCGCTCCCAGGGAAGCTCATA
TCGTCTAGACCACGCATGCTGCTAACTTCATGCTGCGATGACAACGAGGA
GAACGAGGGCGTAGGAGCGAGAAATGAGGAGGAGGAGGACGCAGACGTGG
GTGCCACACGCGTCAACCGACAGCCAGAGCCTGACTTTCCTCCCTTTCCC
CCTTCCTGCGTTGCCAGAC back to topprotein sequence of jgi.p|Nanoce1779_2|674790 >mRNA_10386-protein ID=mRNA_10386-protein|Name=jgi.p|Nanoce1779_2|674790|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MTTPAPAVPEQESKEIRAEWRVFIPVATKLSQETLGDVFDGPYDKRKGDG
MEGRSDIYIAVNPAIGLKRRGAKGRVELKLLTEDRKEGEEEDIKASSTYG
QSSSITSTITFTTSLYLHQQIGKGLAEEESLAQVHTLLEAHGLIDSHVTS
LLASEDGTKSVEVAKVRFSFNFFCTPCPCSGSNLPSPHWLPHVSFFFTKL
RVGKVYEDHGVLVEDCLVEAEGKQYRSFAVEGNKEKVKAFLSSHAVGKKM
YELAMTQKEAVLHGYPNFVCKCACL* back to topmRNA from alignment at scaffold_55:66622..69240- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10386 ID=mRNA_10386|Name=jgi.p|Nanoce1779_2|674790|organism=Nannochloropsis oceanica|type=mRNA|length=2619bp|location=Sequence derived from alignment at scaffold_55:66622..69240- (Nannochloropsis oceanica)
AACAGCGCACCACACCTGCACTGCACAGATAGCATGACAACCCCAGCCCC
GGCCGTCCCGGAGCAGGAATCTAAGGAAATTCGGGCTGAGTGGCGGGTGT
TTATTCCCGTGGCAACCAAACTTAGCCAGGAAACCCTTGGAGATGTGTTC
GACGGCCCCTATGACAAGCGGAAGGGAGATGGTATGGAGGGCCGGAGCGA
CATGTAGGTACATTCGGAAATTGAGCGGGAGTACACCGACCTGAGTCGTC
CCTTCATAATGCCGCAGACATCGGCACCTTAGCATCGGCCGTAGTTGAAA
GGGAGGGGTCGAAAGGACGCAAGATCTTGTGCCCGCGCACTCACCCGTCC
ATTTCTCTATCTCTTCCTTCCTTTACTTCTTCAGCTATATTGCTGTAAAC
CCGGCCATTGGCTTGAAGCGTCGCGGTGCCAAGGGTCGCGTGGAGCTCAA
ACTCCTGACGGAAGACAGAAAGGAGGGGGAGGAGGAAGACATCAAGGGTA
TCGAGCACTGGAAAAAGTTCAAGGCGAGTGACCGTTCATGAGTGCACCAA
ACCTTTTCTTCTCCTCTAGCGTCAAGCACCTACGGTCAATCCTCGTCTAT
AACTTCGACCATCACTTTTACGACCTCCCTCTATTTACACCAACAGATCG
GGAAGGGCCTGGCGGAGGAGGAGTCGCTCGCGCAAGTGCACACGTTGCTT
GAGGTATGGAAGGCCAGGAAGGGGCCAGTGGCCAGGTGGACAGCACAAAC
TCTTGCATTCATCCCAACTCTTCCATTTATGTCATTTTTCTTTCTAACAG
GCTCACGGTTTGATTGACAGCCACGTCACTTCCCTTCTCGCCTCGGAGGA
CGGAACCAAGAGTGTGGAGGTTGCCAAGGTTCGTTTCTCTTTCAACTTTT
TCTGTACTCCATGTCCATGTTCCGGTTCAAATCTTCCTTCTCCTCATTGG
CTTCCACATGTATCTTTCTTCTTCACAAAGCTGCGTGTGGGTAAGGTCTA
TGAAGACCATGGAGTCCTTGTGGAGGACTGCCTGGTTGAAGCCGAGGGCA
AGCAATATCGCAGCTTCGCCGTAGAAGGGAACAAAGAGAAAGTGAAGGCT
TTTCTCTCTTCCCACGCTGTGGGGAAAAAAATGTATGAGCTGGCAATGAC
TCAGAAAGAGGCAGTCTTGCATGGCTATCCGAATTTTGTTTGCAAGTGTG
CGTGCCTCTAAGAAGTGGTGAAACGAGAAAGGTAAAGATGTAGGGTCCTC
ACGTTGGCGAGATAATGGAAAATCGGGCTTGCTAGAGTAGATTAGATCTA
TGTATTTGGTTAGATATGTCTTAATAGGGTAAGGGGTAGATACCTGATCG
TACCTATAAGGGAGAGGGAAGAGAATGTGTGGGGTCTCCGAACGCGTTTA
TGCGTCGGTTGTGTGAGTTGTTCCCATGATCTTAACCGAAAGACAAGGCC
GAAGATGCCAACTGTAATGACAGTTTAAATGAAATTCGATTTGTTTTACT
GGTCGCGACAAGAGCTTGATATCACACGCGTGTATTTCCTCATCGAAGTG
TTAAAAATTATCAATATCCACTAGACACTCCTTCACAGCTTTCTATTCTT
GACTCTAACAATCTACCTACATCTATCCGAGACAGAAATTCCACTTCCGT
TTCTTACTTTCTTTCAAGGTCTATCCAGCCTTTTCCCTCTCCTTCAACGC
ACCGATGCCGCGGCCGCCTTACTCACCTCTCCCATGATCTCACTGATCAT
TTCTTCCCCCGTGTTCGCCAGCGCCGACACCAAATCTGAACTGTTGTACA
CGGGCCGAGGCGCCCACAGCGGCGCAGTAAAGACACAGCCTATGATGAAC
AGGCGGAGAACCGTCGCTTCCATGCGCGAGTACCGACCAAAGAAACCATT
GAGAATTTTCATATCCTGTCGAAGCATCAACCAGAATCGCACCAAAAGAG
TAGCAACCAGAGAGGCCTCGCTCCGCCAGTACGTCCCCCTTGTGAGCGCT
AAAAGCATGGGCGATAAAGCCACCACGTCCAAAAGGGTCGCAAACATCTC
ACATGCCAGCAAGTAAGCTCCTTGCGCCAGGGTCAAGGACAAAACAGTCC
AAGCATAGGCCGGCATTTCGGTCAAAGGAGGAATGTCAAGCGGGTTTCGC
GGGATGCGCGTTGGGATGGTCAGCACGGTCCACAGGGCCATTAACTGCTG
GAACTCGCCTTCGATCGCCAAAAATGCCACCAGCTCCCGAAATGGCGCGG
ACCAGCCTGGATGAGTCAAGGCATACACGCCCATACCAAAGCCAGGAAAA
GCCCCCAAAATGGAAGCGGGAGTAGGGCTATGGAACACGCGGAGGAGGTC
CATAATTGTGCCTTCAACACCACGGGACACTCGCTCGATCCATCCCCAGG
AAGGGTACATGTACACGGTTGCCAGCAGCTCGCTCCCAGGGAAGCTCATA
TCGTCTAGACCACGCATGCTGCTAACTTCATGCTGCGATGACAACGAGGA
GAACGAGGGCGTAGGAGCGAGAAATGAGGAGGAGGAGGACGCAGACGTGG
GTGCCACACGCGTCAACCGACAGCCAGAGCCTGACTTTCCTCCCTTTCCC
CCTTCCTGCGTTGCCAGAC back to topCoding sequence (CDS) from alignment at scaffold_55:66622..69240- >mRNA_10386 ID=mRNA_10386|Name=jgi.p|Nanoce1779_2|674790|organism=Nannochloropsis oceanica|type=CDS|length=3312bp|location=Sequence derived from alignment at scaffold_55:66622..69240- (Nannochloropsis oceanica)
GCTCACGGTTTGATTGACAGCCACGTCACTTCCCTTCTCGCCTCGGAGGA
CGGAACCAAGAGTGTGGAGGTTGCCAAGGTTCGTTTCTCTTTCAACTTTT
TCTGTACTCCATGTCCATGTTCCGGTTCAAATCTTCCTTCTCCTCATTGG
CTTCCACATGTATCTTTCTTCTTCACAAAGCTGCGTGTGGGTAAGGTCTA
TGAAGACCATGGAGTCCTTGTGGAGGACTGCCTGGTTGAAGCCGAGGGCA
AGCAATATCGCAGCTTCGCCGTAGAAGGGAACAAAGAGAAAGTGAAGGCT
TTTCTCTCTTCCCACGCTGTGGGGAAAAAAATGTATGAGCTGGCAATGAC
TCAGAAAGAGGCAGTCTTGCATGGCTATCCGAATTTTGTTTGCAAGTGTG
CGTGCCTCTAACGTCAAGCACCTACGGTCAATCCTCGTCTATAACTTCGA
CCATCACTTTTACGACCTCCCTCTATTTACACCAACAGATCGGGAAGGGC
CTGGCGGAGGAGGAGTCGCTCGCGCAAGTGCACACGTTGCTTGAGCTATA
TTGCTGTAAACCCGGCCATTGGCTTGAAGCGTCGCGGTGCCAAGGGTCGC
GTGGAGCTCAAACTCCTGACGGAAGACAGAAAGGAGGGGGAGGAGGAAGA
CATCAAGGATGACAACCCCAGCCCCGGCCGTCCCGGAGCAGGAATCTAAG
GAAATTCGGGCTGAGTGGCGGGTGTTTATTCCCGTGGCAACCAAACTTAG
CCAGGAAACCCTTGGAGATGTGTTCGACGGCCCCTATGACAAGCGGAAGG
GAGATGGTATGGAGGGCCGGAGCGACATGCTCACGGTTTGATTGACAGCC
ACGTCACTTCCCTTCTCGCCTCGGAGGACGGAACCAAGAGTGTGGAGGTT
GCCAAGGTTCGTTTCTCTTTCAACTTTTTCTGTACTCCATGTCCATGTTC
CGGTTCAAATCTTCCTTCTCCTCATTGGCTTCCACATGTATCTTTCTTCT
TCACAAAGCTGCGTGTGGGTAAGGTCTATGAAGACCATGGAGTCCTTGTG
GAGGACTGCCTGGTTGAAGCCGAGGGCAAGCAATATCGCAGCTTCGCCGT
AGAAGGGAACAAAGAGAAAGTGAAGGCTTTTCTCTCTTCCCACGCTGTGG
GGAAAAAAATGTATGAGCTGGCAATGACTCAGAAAGAGGCAGTCTTGCAT
GGCTATCCGAATTTTGTTTGCAAGTGTGCGTGCCTCTAACGTCAAGCACC
TACGGTCAATCCTCGTCTATAACTTCGACCATCACTTTTACGACCTCCCT
CTATTTACACCAACAGATCGGGAAGGGCCTGGCGGAGGAGGAGTCGCTCG
CGCAAGTGCACACGTTGCTTGAGCTATATTGCTGTAAACCCGGCCATTGG
CTTGAAGCGTCGCGGTGCCAAGGGTCGCGTGGAGCTCAAACTCCTGACGG
AAGACAGAAAGGAGGGGGAGGAGGAAGACATCAAGGATGACAACCCCAGC
CCCGGCCGTCCCGGAGCAGGAATCTAAGGAAATTCGGGCTGAGTGGCGGG
TGTTTATTCCCGTGGCAACCAAACTTAGCCAGGAAACCCTTGGAGATGTG
TTCGACGGCCCCTATGACAAGCGGAAGGGAGATGGTATGGAGGGCCGGAG
CGACATGCTCACGGTTTGATTGACAGCCACGTCACTTCCCTTCTCGCCTC
GGAGGACGGAACCAAGAGTGTGGAGGTTGCCAAGGTTCGTTTCTCTTTCA
ACTTTTTCTGTACTCCATGTCCATGTTCCGGTTCAAATCTTCCTTCTCCT
CATTGGCTTCCACATGTATCTTTCTTCTTCACAAAGCTGCGTGTGGGTAA
GGTCTATGAAGACCATGGAGTCCTTGTGGAGGACTGCCTGGTTGAAGCCG
AGGGCAAGCAATATCGCAGCTTCGCCGTAGAAGGGAACAAAGAGAAAGTG
AAGGCTTTTCTCTCTTCCCACGCTGTGGGGAAAAAAATGTATGAGCTGGC
AATGACTCAGAAAGAGGCAGTCTTGCATGGCTATCCGAATTTTGTTTGCA
AGTGTGCGTGCCTCTAACGTCAAGCACCTACGGTCAATCCTCGTCTATAA
CTTCGACCATCACTTTTACGACCTCCCTCTATTTACACCAACAGATCGGG
AAGGGCCTGGCGGAGGAGGAGTCGCTCGCGCAAGTGCACACGTTGCTTGA
GCTATATTGCTGTAAACCCGGCCATTGGCTTGAAGCGTCGCGGTGCCAAG
GGTCGCGTGGAGCTCAAACTCCTGACGGAAGACAGAAAGGAGGGGGAGGA
GGAAGACATCAAGGATGACAACCCCAGCCCCGGCCGTCCCGGAGCAGGAA
TCTAAGGAAATTCGGGCTGAGTGGCGGGTGTTTATTCCCGTGGCAACCAA
ACTTAGCCAGGAAACCCTTGGAGATGTGTTCGACGGCCCCTATGACAAGC
GGAAGGGAGATGGTATGGAGGGCCGGAGCGACATGCTCACGGTTTGATTG
ACAGCCACGTCACTTCCCTTCTCGCCTCGGAGGACGGAACCAAGAGTGTG
GAGGTTGCCAAGGTTCGTTTCTCTTTCAACTTTTTCTGTACTCCATGTCC
ATGTTCCGGTTCAAATCTTCCTTCTCCTCATTGGCTTCCACATGTATCTT
TCTTCTTCACAAAGCTGCGTGTGGGTAAGGTCTATGAAGACCATGGAGTC
CTTGTGGAGGACTGCCTGGTTGAAGCCGAGGGCAAGCAATATCGCAGCTT
CGCCGTAGAAGGGAACAAAGAGAAAGTGAAGGCTTTTCTCTCTTCCCACG
CTGTGGGGAAAAAAATGTATGAGCTGGCAATGACTCAGAAAGAGGCAGTC
TTGCATGGCTATCCGAATTTTGTTTGCAAGTGTGCGTGCCTCTAACGTCA
AGCACCTACGGTCAATCCTCGTCTATAACTTCGACCATCACTTTTACGAC
CTCCCTCTATTTACACCAACAGATCGGGAAGGGCCTGGCGGAGGAGGAGT
CGCTCGCGCAAGTGCACACGTTGCTTGAGCTATATTGCTGTAAACCCGGC
CATTGGCTTGAAGCGTCGCGGTGCCAAGGGTCGCGTGGAGCTCAAACTCC
TGACGGAAGACAGAAAGGAGGGGGAGGAGGAAGACATCAAGGATGACAAC
CCCAGCCCCGGCCGTCCCGGAGCAGGAATCTAAGGAAATTCGGGCTGAGT
GGCGGGTGTTTATTCCCGTGGCAACCAAACTTAGCCAGGAAACCCTTGGA
GATGTGTTCGACGGCCCCTATGACAAGCGGAAGGGAGATGGTATGGAGGG
CCGGAGCGACAT back to top
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