jgi.p|Nanoce1779_2|611261, mRNA_10379 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611261
Unique NamemRNA_10379
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1016
Alignment locationscaffold_55:42980..43995 +

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Properties
Property NameValue
TranscriptId611347
TrackFilteredModels2
ProteinId611261
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_55supercontigscaffold_55:42980..43995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611261gene_10379Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611261mRNA_10379-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10379CDS_10379Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10379 ID=mRNA_10379|Name=jgi.p|Nanoce1779_2|611261|organism=Nannochloropsis oceanica|type=mRNA|length=1016bp
GGGGGGGGGGGCACGCAGGAGGGTGGGAGGGAGAACGCGGGGAAAAAATC
GGGGCAGAAAGCCGCTGAAAAATATCAAGGAATTTTTTACGAAGCGACCC
AAAATCAAGCATGAAGCGGGAGAAAGGGAGGGAGGAGGAGGAGGGGGGGG
GGGGGTTAGGATACAGTCAGGATGACTTGGCCTCATACGCAAGCTTCGAA
GACGAGGACGAGGACATGGGGCAGGGAGAGGGGGGTGGCAGCGGCAGCAG
CAGAAGCAGTGGCAGCAGCAGTGACGACAGCAGCGACGAGGATAGCGCTG
CATACGACGACGAGGACGAGGGCGAGCTGGAAGAGAACATACCTCCGGGT
ATGGCTGCAAATGTCTCTTCCAAGCCAAAACGATGGCCGTGTATGGCGGC
GCAGAAGTGGACTTTTCGCGCCACAATTCGCTGTGAGAGGACGGGCAAGT
GGGCCTTACTGTGGGAGAGTGACACCGCCACCACCTTCTACACAGAGCAG
CCGGACGAGAGCTGGCAGTTGTATTTGCCCCAAGGAAGCCTGAGTGAGTT
CCTCAAGCCGCCTCTTCTTCCCTCCCTCCCTCCCTCCCTCTCTCCCTTTT
CTGCGTTCACCGTCTTTGGATGCACAAAAATCGATTTCTCCGTCACTCAC
CCCCTTCCACCCTCCCTCTCTGCATCCTTCCCTTGTGCCCCTCAGGTGTC
TTGTCCAACTGGCACTCTCTCTATACCACCCATGCCTCCATGCTCAACGT
CGAGGCCGGTGCGACCTTCTACGTCCAGCCCACGCTCCTGTGTGGGGACG
AGGAGGGCGAGAAGGACGACAGGGAGAAGGAGTGGGAGTTTGCAACGGTG
AAGAAGGAGGAGTGTGGAGAGTACGCGGTCTCTTTTGTGGGGCTCAGCTT
CAAGGCGCCTGATATTTACTTCCTCGGTCAGTTTATTCGGAGTTTGCTGG
ACTAGGAAGGGGGGAGGGCGGGCGGCAGGGAGGGAGGGAGGAGAGGAGGG
AGGGAGGTTGATAGCT
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protein sequence of jgi.p|Nanoce1779_2|611261

>mRNA_10379-protein ID=mRNA_10379-protein|Name=jgi.p|Nanoce1779_2|611261|organism=Nannochloropsis oceanica|type=polypeptide|length=212bp
MGQGEGGGSGSSRSSGSSSDDSSDEDSAAYDDEDEGELEENIPPGMAANV
SSKPKRWPCMAAQKWTFRATIRCERTGKWALLWESDTATTFYTEQPDESW
QLYLPQGSLSEFLKPPLLPSLPPSLSPFSAFTVFGCTKIDFSVTHPLPPS
LSASFPCAPQVSCPTGTLSIPPMPPCSTSRPVRPSTSSPRSCVGTRRARR
TTGRRSGSLQR*
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mRNA from alignment at scaffold_55:42980..43995+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10379 ID=mRNA_10379|Name=jgi.p|Nanoce1779_2|611261|organism=Nannochloropsis oceanica|type=mRNA|length=1016bp|location=Sequence derived from alignment at scaffold_55:42980..43995+ (Nannochloropsis oceanica)
GGGGGGGGGGGCACGCAGGAGGGTGGGAGGGAGAACGCGGGGAAAAAATC
GGGGCAGAAAGCCGCTGAAAAATATCAAGGAATTTTTTACGAAGCGACCC
AAAATCAAGCATGAAGCGGGAGAAAGGGAGGGAGGAGGAGGAGGGGGGGG
GGGGGTTAGGATACAGTCAGGATGACTTGGCCTCATACGCAAGCTTCGAA
GACGAGGACGAGGACATGGGGCAGGGAGAGGGGGGTGGCAGCGGCAGCAG
CAGAAGCAGTGGCAGCAGCAGTGACGACAGCAGCGACGAGGATAGCGCTG
CATACGACGACGAGGACGAGGGCGAGCTGGAAGAGAACATACCTCCGGGT
ATGGCTGCAAATGTCTCTTCCAAGCCAAAACGATGGCCGTGTATGGCGGC
GCAGAAGTGGACTTTTCGCGCCACAATTCGCTGTGAGAGGACGGGCAAGT
GGGCCTTACTGTGGGAGAGTGACACCGCCACCACCTTCTACACAGAGCAG
CCGGACGAGAGCTGGCAGTTGTATTTGCCCCAAGGAAGCCTGAGTGAGTT
CCTCAAGCCGCCTCTTCTTCCCTCCCTCCCTCCCTCCCTCTCTCCCTTTT
CTGCGTTCACCGTCTTTGGATGCACAAAAATCGATTTCTCCGTCACTCAC
CCCCTTCCACCCTCCCTCTCTGCATCCTTCCCTTGTGCCCCTCAGGTGTC
TTGTCCAACTGGCACTCTCTCTATACCACCCATGCCTCCATGCTCAACGT
CGAGGCCGGTGCGACCTTCTACGTCCAGCCCACGCTCCTGTGTGGGGACG
AGGAGGGCGAGAAGGACGACAGGGAGAAGGAGTGGGAGTTTGCAACGGTG
AAGAAGGAGGAGTGTGGAGAGTACGCGGTCTCTTTTGTGGGGCTCAGCTT
CAAGGCGCCTGATATTTACTTCCTCGGTCAGTTTATTCGGAGTTTGCTGG
ACTAGGAAGGGGGGAGGGCGGGCGGCAGGGAGGGAGGGAGGAGAGGAGGG
AGGGAGGTTGATAGCT
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Coding sequence (CDS) from alignment at scaffold_55:42980..43995+

>mRNA_10379 ID=mRNA_10379|Name=jgi.p|Nanoce1779_2|611261|organism=Nannochloropsis oceanica|type=CDS|length=636bp|location=Sequence derived from alignment at scaffold_55:42980..43995+ (Nannochloropsis oceanica)
ATGGGGCAGGGAGAGGGGGGTGGCAGCGGCAGCAGCAGAAGCAGTGGCAG
CAGCAGTGACGACAGCAGCGACGAGGATAGCGCTGCATACGACGACGAGG
ACGAGGGCGAGCTGGAAGAGAACATACCTCCGGGTATGGCTGCAAATGTC
TCTTCCAAGCCAAAACGATGGCCGTGTATGGCGGCGCAGAAGTGGACTTT
TCGCGCCACAATTCGCTGTGAGAGGACGGGCAAGTGGGCCTTACTGTGGG
AGAGTGACACCGCCACCACCTTCTACACAGAGCAGCCGGACGAGAGCTGG
CAGTTGTATTTGCCCCAAGGAAGCCTGAGTGAGTTCCTCAAGCCGCCTCT
TCTTCCCTCCCTCCCTCCCTCCCTCTCTCCCTTTTCTGCGTTCACCGTCT
TTGGATGCACAAAAATCGATTTCTCCGTCACTCACCCCCTTCCACCCTCC
CTCTCTGCATCCTTCCCTTGTGCCCCTCAGGTGTCTTGTCCAACTGGCAC
TCTCTCTATACCACCCATGCCTCCATGCTCAACGTCGAGGCCGGTGCGAC
CTTCTACGTCCAGCCCACGCTCCTGTGTGGGGACGAGGAGGGCGAGAAGG
ACGACAGGGAGAAGGAGTGGGAGTTTGCAACGGTGA
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Synonyms
Publications