jgi.p|Nanoce1779_2|350549, mRNA_10378 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|350549
Unique Name	mRNA_10378
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1550
Alignment location	scaffold_55:41821..43600 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	350635
Track	FilteredModels2
ProteinId	350549

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_55	supercontig	scaffold_55:41821..43600 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|350549	gene_10378	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|350549	mRNA_10378-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10378	CDS_10378	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_55:41821..43600+
coding sequence from alignment at scaffold_55:41821..43600+

mRNA sequence

>mRNA_10378 ID=mRNA_10378|Name=jgi.p|Nanoce1779_2|350549|organism=Nannochloropsis oceanica|type=mRNA|length=1550bp
TTCCTCCCAAGTTCAAACTTCACTGACTCAAAGTACAATTCACAGTCATA
ATCAGCAACAGCAGCAGCAGTATCGTCTTGACAGCGACGGCCGTCGGCGC
TGACTTCCCTATCAGCAATGGACGACCCTACGCATTCAGCAACCTCCTCC
TCCCCTACCCTCACTCCTGCCGCCCTCCATGCCTGCCGAGACGTCCTCCA
GCTCCTCCGCTCCGCCTCGTCCCTCACCAACGAGTTCACCGATTCTCTCT
CCCTCTATCTGAAAGACCGGGAAGCCTCCGACCCCGAAATCTTGACCCTC
CGCTCCCTCCAACGCACCCTCGCTCTCCTCCTCCCCCCCCTTCCTGCCCC
CCTTTCTCCACCCACTGCCGAAGAAGAAGCGTCTCGCTCACCCGTAGACA
GGGTATTGCAAGACCCTGATCTCCTCGCGTTGATTCTTGCGCGATTGGTG
GAGGGAAAGAAGGCCAGCATGGTCTCTCGCAAAGCACTGGGGGAGTGTGC
CTTAGTGGCTAGGGGCTGGAAGGACGTGGCCTGGCGAGATGTGTTTTGGG
CCGACATATGCAAGGGGGCGATGCCGCTCTTGTTGATGGATAGGGCTGAA
GAAAAGGAGGGTGGGGCGGGCCTGGGGAATATGACGCACTTGCCGAAGCA
TGAAGTCTTGAGGCGACATGGGGTGGCGGTGGCGGGGGGCGGGAGAAGGC
TCCTCAGAGGGCACTGGGCTGACGAGATGAGCGTGTGCTTCGAAGTCTTT
GAGAAGGAGACTGGACGCAGGCTGTACACGGGCGTGGGGCCGGTTAATCT
GTATTCGAGGGAGGACCCAGAGGACCCGGACGGCGACATGAACATCGACC
TGCACGTCTGGAGCGGCCAGAGCAAGGAGTGCATCGGCGGTTCCTTCTCT
GTAGCTCAGTACGACGACTATAATCCGGAGGGGGGGGGGGCACGCAGGAG
GGTGGGAGGGAGAACGCGGGGAAAAAATCGGGGCAGAAAGCCGCTGAAAA
ATATCAAGGAATTTTTTACGAAGCGACCCAAAATCAAGCATGAAGCGGGA
GAAAGGGAGGGAGGAGGAGGAGGGGGGGGGGGGGTTAGGATACAGTCAGG
ATGACTTGGCCTCATACGCAAGCTTCGAAGACGAGGACGAGGACATGGGG
CAGGGAGAGGGGGGTGGCAGCGGCAGCAGCAGAAGCAGTGGCAGCAGCAG
TGACGACAGCAGCGACGAGGATAGCGCTGCATACGACGACGAGGACGAGG
GCGAGCTGGAAGAGAACATACCTCCGGGTATGGCTGCAAATGTCTCTTCC
AAGCCAAAACGATGGCCGTGTATGGCGGCGCAGAAGTGGACTTTTCGCGC
CACAATTCGCTGTGAGAGGACGGGCAAGTGGGCCTTACTGTGGGAGAGTG
ACACCGCCACCACCTTCTACACAGAGCAGCCGGACGAGAGCTGGCAGTTG
TATTTGCCCCAAGGAAGCCTGAGTGAGTTCCTCAAGCCGCCTCTTCTTCC
CTCCCTCCCTCCCTCCCTCTCTCCCTTTTCTGCGTTCACCGTCTTTGGAT

protein sequence of jgi.p|Nanoce1779_2|350549

>mRNA_10378-protein ID=mRNA_10378-protein|Name=jgi.p|Nanoce1779_2|350549|organism=Nannochloropsis oceanica|type=polypeptide|length=329bp
MDDPTHSATSSSPTLTPAALHACRDVLQLLRSASSLTNEFTDSLSLYLKD
REASDPEILTLRSLQRTLALLLPPLPAPLSPPTAEEEASRSPVDRVLQDP
DLLALILARLVEGKKASMVSRKALGECALVARGWKDVAWRDVFWADICKG
AMPLLLMDRAEEKEGGAGLGNMTHLPKHEVLRRHGVAVAGGGRRLLRGHW
ADEMSVCFEVFEKETGRRLYTGVGPVNLYSREDPEDPDGDMNIDLHVWSG
QSKECIGGSFSVAQYDDYNPEGGGARRRVGGRTRGKNRGRKPLKNIKEFF
TKRPKIKHEAGEREGGGGGGGGVRIQSG*

mRNA from alignment at scaffold_55:41821..43600+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10378 ID=mRNA_10378|Name=jgi.p|Nanoce1779_2|350549|organism=Nannochloropsis oceanica|type=mRNA|length=1780bp|location=Sequence derived from alignment at scaffold_55:41821..43600+ (Nannochloropsis oceanica)
TTCCTCCCAAGTTCAAACTTCACTGACTCAAAGTACAATTCACAGTCATA
ATCAGCAACAGCAGCAGCAGTATCGTCTTGACAGCGACGGCCGTCGGCGC
TGACTTCCCTATCAGCAATGGACGACCCTACGCATTCAGCAACCTCCTCC
TCCCCTACCCTCACTCCTGCCGCCCTCCATGCCTGCCGAGACGTCCTCCA
GCTCCTCCGCTCCGCCTCGTCCCTCACCAACGAGTTCACCGATTCTCTCT
CCCTCTATCTGAAAGACCGGGAAGCCTCCGACCCCGAAATCTTGACCCTC
CGCTCCCTCCAACGCACCCTCGCTCTCCTCCTCCCCCCCCTTCCTGCCCC
CCTTTCTCCACCCACTGCCGAAGAAGAAGCGTCTCGCTCACCCGTAGACA
GGGTATTGCAAGACCCTGATCTCCTCGCGTTGATTCTTGCGCGATTGGTG
GAGGGAAAGAAGGCCAGCATGGTCTCTCGCAAAGCACTGGGGGAGTGTGC
CTTAGTGGCTAGGGGCTGGAAGGACGTGGCCTGGCGAGATGTGTTTTGGG
CCGACATATGCAAGGGGGCGATGCCGCTCTTGTTGATGGATAGGGCTGAA
GAAAAGGAGGGTGGGGCGGGCCTGGGGAATATGACGCACTTGCCGAAGCA
TGAAGTCTTGAGGCGACATGGGGTGGCGGTGGCGGGGGGCGGGAGAAGGC
TCCTCAGAGGGCACTGGGCTGACGAGATGAGCGTGTGCTTCGAAGTCTTT
GAGAAGGAGACTGGACGCAGGCTGTACACGGGCGTGGGGCCGGTTAATCT
GTATTCGAGGGAGGACCCAGAGGACCCGGTGAGGAAAAGTTGGGGGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGAGGGAGGGAGGGAGGGAGAGGGAGGG
AGGGAGTAAGAGAGGGGATACCTATGTACACACTGCACATCTCGTTTGTG
AAACGATCACCCGCACGCTCAGCCCCCCAGTCAATGAATACAACCACCCT
TTTTTCTTCCCCATAAACCATAACTCCCCTCCCTGCCCCCCTCCTTCCGC
CCATCCAGGACGGCGACATGAACATCGACCTGCACGTCTGGAGCGGCCAG
AGCAAGGAGTGCATCGGCGGTTCCTTCTCTGTAGCTCAGTACGACGACTA
TAATCCGGAGGGGGGGGGGGCACGCAGGAGGGTGGGAGGGAGAACGCGGG
GAAAAAATCGGGGCAGAAAGCCGCTGAAAAATATCAAGGAATTTTTTACG
AAGCGACCCAAAATCAAGCATGAAGCGGGAGAAAGGGAGGGAGGAGGAGG
AGGGGGGGGGGGGGTTAGGATACAGTCAGGATGACTTGGCCTCATACGCA
AGCTTCGAAGACGAGGACGAGGACATGGGGCAGGGAGAGGGGGGTGGCAG
CGGCAGCAGCAGAAGCAGTGGCAGCAGCAGTGACGACAGCAGCGACGAGG
ATAGCGCTGCATACGACGACGAGGACGAGGGCGAGCTGGAAGAGAACATA
CCTCCGGGTATGGCTGCAAATGTCTCTTCCAAGCCAAAACGATGGCCGTG
TATGGCGGCGCAGAAGTGGACTTTTCGCGCCACAATTCGCTGTGAGAGGA
CGGGCAAGTGGGCCTTACTGTGGGAGAGTGACACCGCCACCACCTTCTAC
ACAGAGCAGCCGGACGAGAGCTGGCAGTTGTATTTGCCCCAAGGAAGCCT
GAGTGAGTTCCTCAAGCCGCCTCTTCTTCCCTCCCTCCCTCCCTCCCTCT
CTCCCTTTTCTGCGTTCACCGTCTTTGGAT

Coding sequence (CDS) from alignment at scaffold_55:41821..43600+

>mRNA_10378 ID=mRNA_10378|Name=jgi.p|Nanoce1779_2|350549|organism=Nannochloropsis oceanica|type=CDS|length=1974bp|location=Sequence derived from alignment at scaffold_55:41821..43600+ (Nannochloropsis oceanica)
ATGGACGACCCTACGCATTCAGCAACCTCCTCCTCCCCTACCCTCACTCC
TGCCGCCCTCCATGCCTGCCGAGACGTCCTCCAGCTCCTCCGCTCCGCCT
CGTCCCTCACCAACGAGTTCACCGATTCTCTCTCCCTCTATCTGAAAGAC
CGGGAAGCCTCCGACCCCGAAATCTTGACCCTCCGCTCCCTCCAACGCAC
CCTCGCTCTCCTCCTCCCCCCCCTTCCTGCCCCCCTTTCTCCACCCACTG
CCGAAGAAGAAGCGTCTCGCTCACCCGTAGACAGGGTATTGCAAGACCCT
GATCTCCTCGCGTTGATTCTTGCGCGATTGGTGGAGGGAAAGAAGGCCAG
CATGGTCTCTCGCAAAGCACTGGGGGAGTGTGCCTTAGTGGCTAGGGGCT
GGAAGGACGTGGCCTGGCGAGATGTGTTTTGGGCCGACATATGCAAGGGG
GCGATGCCGCTCTTGTTGATGGATAGGGCTGAAGAAAAGGAGGGTGGGGC
GGGCCTGGGGAATATGACGCACTTGCCGAAGCATGAAGTCTTGAGGCGAC
ATGGGGTGGCGGTGGCGGGGGGCGGGAGAAGGCTCCTCAGAGGGCACTGG
GCTGACGAGATGAGCGTGTGCTTCGAAGTCTTTGAGAAGGAGACTGGACG
CAGGCTGTACACGGGCGTGGGGCCGGTTAATCTGTATTCGAGGGAGGACC
CAGAGGACCCGGACGGCGACATGAACATCGACCTGCACGTCTGGAGCGGC
CAGAGCAAGGAGTGCATCGGCGGTTCCTTCTCTGTAGCTCAGTACGACGA
CTATAATCCGGAGGGGGGGGGGGCACGCAGGAGGGTGGGAGGGAGAACGC
GGGGAAAAAATCGGGGCAGAAAGCCGCTGAAAAATATCAAGGAATTTTTT
ACGAAGCGACCCAAAATCAAGCATGAAGCGGGAGAAAGGGAGGGAGGAGG
AGGAGGGGGGGGGGGGGTTAGGATACAGTCAGGATGAATGGACGACCCTA
CGCATTCAGCAACCTCCTCCTCCCCTACCCTCACTCCTGCCGCCCTCCAT
GCCTGCCGAGACGTCCTCCAGCTCCTCCGCTCCGCCTCGTCCCTCACCAA
CGAGTTCACCGATTCTCTCTCCCTCTATCTGAAAGACCGGGAAGCCTCCG
ACCCCGAAATCTTGACCCTCCGCTCCCTCCAACGCACCCTCGCTCTCCTC
CTCCCCCCCCTTCCTGCCCCCCTTTCTCCACCCACTGCCGAAGAAGAAGC
GTCTCGCTCACCCGTAGACAGGGTATTGCAAGACCCTGATCTCCTCGCGT
TGATTCTTGCGCGATTGGTGGAGGGAAAGAAGGCCAGCATGGTCTCTCGC
AAAGCACTGGGGGAGTGTGCCTTAGTGGCTAGGGGCTGGAAGGACGTGGC
CTGGCGAGATGTGTTTTGGGCCGACATATGCAAGGGGGCGATGCCGCTCT
TGTTGATGGATAGGGCTGAAGAAAAGGAGGGTGGGGCGGGCCTGGGGAAT
ATGACGCACTTGCCGAAGCATGAAGTCTTGAGGCGACATGGGGTGGCGGT
GGCGGGGGGCGGGAGAAGGCTCCTCAGAGGGCACTGGGCTGACGAGATGA
GCGTGTGCTTCGAAGTCTTTGAGAAGGAGACTGGACGCAGGCTGTACACG
GGCGTGGGGCCGGTTAATCTGTATTCGAGGGAGGACCCAGAGGACCCGGA
CGGCGACATGAACATCGACCTGCACGTCTGGAGCGGCCAGAGCAAGGAGT
GCATCGGCGGTTCCTTCTCTGTAGCTCAGTACGACGACTATAATCCGGAG
GGGGGGGGGGCACGCAGGAGGGTGGGAGGGAGAACGCGGGGAAAAAATCG
GGGCAGAAAGCCGCTGAAAAATATCAAGGAATTTTTTACGAAGCGACCCA
AAATCAAGCATGAAGCGGGAGAAAGGGAGGGAGGAGGAGGAGGGGGGGGG
GGGGTTAGGATACAGTCAGGATGA

Synonyms

Publications