jgi.p|Nanoce1779_2|611252, mRNA_10377 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611252
Unique NamemRNA_10377
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length579
Alignment locationscaffold_55:40444..41558 -

Link to JBrowse

Properties
Property NameValue
TranscriptId611338
TrackFilteredModels2
ProteinId611252
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_55supercontigscaffold_55:40444..41558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611252gene_10377Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611252mRNA_10377-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10377CDS_10377Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10377 ID=mRNA_10377|Name=jgi.p|Nanoce1779_2|611252|organism=Nannochloropsis oceanica|type=mRNA|length=579bp
AGAGTCGACGCCGCAGCCCAGACATGCCACCACCGATCGCAACTGCAGCA
CCGGCGCCGCCGCCTCCATCCAGATACCCGAGCACCGCAAGAGGGCCCCC
TCCACCTTTTCCCAGCTTGCCAGACAAGGAGATATACGAGCATATGCTTC
CTCCTTCCGAGGCAGCAACACACGTGTTAGATGCCCGCAGCGGGATGATG
TTTTTTGGTGGCGTTCTCTTGGCAGTGGCAGGCAACGTTCTCGTCGCCCG
TAGATACGGCAAGCGGGTCATGAGCTGGGCTGTCCCGAAACAAAACAAAC
ATAATGCCTATGCCAAAAGAGAGCTGTACAAAGAGTACTGGGATCCAGTC
CTGAAGCGTGCTAGATGGGAGGCATATTTTTCAGCAGCGGCGGAGGAAGA
GCGACAACAAGCAGAGAGGCTCTACGCATGGATGATGGAGGAACGCGAGA
GAGAGGAGCTGCGGGAGAAGCTTCACCGCTTCTACCACGAGAAGGCGGAC
GAGCACACGTAAATCCCTTTCCCTTCCTCCCTCTCTCCTTCCTTCCTTCC
CTCCCTCCCTCCCTCCCTTTCTTCCTCCC
back to top

protein sequence of jgi.p|Nanoce1779_2|611252

>mRNA_10377-protein ID=mRNA_10377-protein|Name=jgi.p|Nanoce1779_2|611252|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MPPPIATAAPAPPPPSRYPSTARGPPPPFPSLPDKEIYEHMLPPSEAATH
VLDARSGMMFFGGVLLAVAGNVLVARRYGKRVMSWAVPKQNKHNAYAKRE
LYKEYWDPVLKRARWEAYFSAAAEEERQQAERLYAWMMEEREREELREKL
HRFYHEKADEHT*
back to top

mRNA from alignment at scaffold_55:40444..41558-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10377 ID=mRNA_10377|Name=jgi.p|Nanoce1779_2|611252|organism=Nannochloropsis oceanica|type=mRNA|length=1115bp|location=Sequence derived from alignment at scaffold_55:40444..41558- (Nannochloropsis oceanica)
AGAGTCGACGCCGCAGCCCAGACATGCCACCACCGATCGCAACTGCAGCA
CCGGCGCCGCCGCCTCCATCCAGATACCCGAGCACCGCAAGAGGGCCCCC
TCCACCTTTTCCCAGCTTGCCAGACAAGGAGATATACGAGCATATGCTTC
CTCCTTCCGAGGCAGCAACACACGTGTTAGATGCCCGCAGGCAAGCGAAA
GAACATAGGAGGAAGGGAAGGGGGGATAGAGATCGGAGAATAATGGAGAG
AAACAATTTAATAGGCAGTGACAGCTTTTATTTTCCATCCATGCACTCAC
ACCCTCCTTCACATCTCCTTTCTCCATCCCTCTCCTTTCCTCAGCGGGAT
GATGTTTTTTGGTGGCGTTCTCTTGGCAGTGGCAGGCAACGTTCTCGTCG
CCCGTAGATACGGCAAGCGGGTCATGAGCTGGGCTGTCCCGAAACAAAAC
AAACATAATGCCTATGCCAAAAGAGAGCTGTACAAAGGTAAGTGTGTTTC
ACCCCTCTCTACTTCCCTCCCTCCTTCCCCACCCCCTCTGTGCCGGCCTC
CCAGGGAAAGCAGGTCTTTTGTTTGTTCAAGAGCGAGAGAATTGCATACA
AAAAGACGTACAAGAGAAAAGCAGGTGTGCATAAGAACATGCTGCCGATT
GACAGTTGTGCAACCCTTTCCTGCTTCCCTCCCTCCTTCAGCTTATGGGG
GGTATTTAGTAACATTCCCCTCCCTCCCTCCCTCTCTTTTTCACTAGAGT
ACTGGGATCCAGTCCTGAAGCGTGCTAGATGGGAGGCATATTTTTCAGCA
GCGGCGGAGGAAGAGCGACAACAAGCAGAGAGGCTCTACGCATGGATGTA
GGGGAGGGAAGGGAGGGAAGGAAGGAAGGAAGAAGGGAGGGGGAACGTCC
CCATAAATGGAACTTACCTTTTTCTCCCTCTTTCTCATTTTAAACCTCCT
GCTTCCCTCCTTTCCTCAGGATGGAGGAACGCGAGAGAGAGGAGCTGCGG
GAGAAGCTTCACCGCTTCTACCACGAGAAGGCGGACGAGCACACGTAAAT
CCCTTTCCCTTCCTCCCTCTCTCCTTCCTTCCTTCCCTCCCTCCCTCCCT
CCCTTTCTTCCTCCC
back to top

Coding sequence (CDS) from alignment at scaffold_55:40444..41558-

>mRNA_10377 ID=mRNA_10377|Name=jgi.p|Nanoce1779_2|611252|organism=Nannochloropsis oceanica|type=CDS|length=1956bp|location=Sequence derived from alignment at scaffold_55:40444..41558- (Nannochloropsis oceanica)
GATGGAGGAACGCGAGAGAGAGGAGCTGCGGGAGAAGCTTCACCGCTTCT
ACCACGAGAAGGCGGACGAGCACACGTAAAGTACTGGGATCCAGTCCTGA
AGCGTGCTAGATGGGAGGCATATTTTTCAGCAGCGGCGGAGGAAGAGCGA
CAACAAGCAGAGAGGCTCTACGCATGGATCGGGATGATGTTTTTTGGTGG
CGTTCTCTTGGCAGTGGCAGGCAACGTTCTCGTCGCCCGTAGATACGGCA
AGCGGGTCATGAGCTGGGCTGTCCCGAAACAAAACAAACATAATGCCTAT
GCCAAAAGAGAGCTGTACAAAGATGCCACCACCGATCGCAACTGCAGCAC
CGGCGCCGCCGCCTCCATCCAGATACCCGAGCACCGCAAGAGGGCCCCCT
CCACCTTTTCCCAGCTTGCCAGACAAGGAGATATACGAGCATATGCTTCC
TCCTTCCGAGGCAGCAACACACGTGTTAGATGCCCGCAGGATGGAGGAAC
GCGAGAGAGAGGAGCTGCGGGAGAAGCTTCACCGCTTCTACCACGAGAAG
GCGGACGAGCACACGTAAAGTACTGGGATCCAGTCCTGAAGCGTGCTAGA
TGGGAGGCATATTTTTCAGCAGCGGCGGAGGAAGAGCGACAACAAGCAGA
GAGGCTCTACGCATGGATCGGGATGATGTTTTTTGGTGGCGTTCTCTTGG
CAGTGGCAGGCAACGTTCTCGTCGCCCGTAGATACGGCAAGCGGGTCATG
AGCTGGGCTGTCCCGAAACAAAACAAACATAATGCCTATGCCAAAAGAGA
GCTGTACAAAGATGCCACCACCGATCGCAACTGCAGCACCGGCGCCGCCG
CCTCCATCCAGATACCCGAGCACCGCAAGAGGGCCCCCTCCACCTTTTCC
CAGCTTGCCAGACAAGGAGATATACGAGCATATGCTTCCTCCTTCCGAGG
CAGCAACACACGTGTTAGATGCCCGCAGGATGGAGGAACGCGAGAGAGAG
GAGCTGCGGGAGAAGCTTCACCGCTTCTACCACGAGAAGGCGGACGAGCA
CACGTAAAGTACTGGGATCCAGTCCTGAAGCGTGCTAGATGGGAGGCATA
TTTTTCAGCAGCGGCGGAGGAAGAGCGACAACAAGCAGAGAGGCTCTACG
CATGGATCGGGATGATGTTTTTTGGTGGCGTTCTCTTGGCAGTGGCAGGC
AACGTTCTCGTCGCCCGTAGATACGGCAAGCGGGTCATGAGCTGGGCTGT
CCCGAAACAAAACAAACATAATGCCTATGCCAAAAGAGAGCTGTACAAAG
ATGCCACCACCGATCGCAACTGCAGCACCGGCGCCGCCGCCTCCATCCAG
ATACCCGAGCACCGCAAGAGGGCCCCCTCCACCTTTTCCCAGCTTGCCAG
ACAAGGAGATATACGAGCATATGCTTCCTCCTTCCGAGGCAGCAACACAC
GTGTTAGATGCCCGCAGGATGGAGGAACGCGAGAGAGAGGAGCTGCGGGA
GAAGCTTCACCGCTTCTACCACGAGAAGGCGGACGAGCACACGTAAAGTA
CTGGGATCCAGTCCTGAAGCGTGCTAGATGGGAGGCATATTTTTCAGCAG
CGGCGGAGGAAGAGCGACAACAAGCAGAGAGGCTCTACGCATGGATCGGG
ATGATGTTTTTTGGTGGCGTTCTCTTGGCAGTGGCAGGCAACGTTCTCGT
CGCCCGTAGATACGGCAAGCGGGTCATGAGCTGGGCTGTCCCGAAACAAA
ACAAACATAATGCCTATGCCAAAAGAGAGCTGTACAAAGATGCCACCACC
GATCGCAACTGCAGCACCGGCGCCGCCGCCTCCATCCAGATACCCGAGCA
CCGCAAGAGGGCCCCCTCCACCTTTTCCCAGCTTGCCAGACAAGGAGATA
TACGAGCATATGCTTCCTCCTTCCGAGGCAGCAACACACGTGTTAGATGC
CCGCAG
back to top
Synonyms
Publications