jgi.p|Nanoce1779_2|611250, mRNA_10375 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611250
Unique NamemRNA_10375
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length942
Alignment locationscaffold_55:38147..39265 -

Link to JBrowse

Properties
Property NameValue
TranscriptId611336
TrackFilteredModels2
ProteinId611250
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_55supercontigscaffold_55:38147..39265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611250gene_10375Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611250mRNA_10375-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10375CDS_10375Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10375 ID=mRNA_10375|Name=jgi.p|Nanoce1779_2|611250|organism=Nannochloropsis oceanica|type=mRNA|length=942bp
CGCGTGAGATAGATGTTGATTGGATGTTTTTCGTCCCCCGTCTTTGTAGG
GCCACTCCCTTTTTTGAGGGGAGAGAATCCTTCTTGCCGCGTGCATAGGT
GGGTACACGCGTTGCTCGCTTCTACCCTCGTTCTCCCTCTTTTCTCTATC
TTTGAATATCAGGTGCATGATGGTAGCCTTTTCTCTTCATTTACGTCTTC
TTTTGCTTTGTCACAGGACCGAAGTCATCCTCTGACCACACGCAATCCCA
GCCGGGTGGGTGCGAGCGAGGTGAGGACATCGGCCCTCTTTCTTCCGTTA
TCGTTTTATTCCACCCTTGCCCTAACTCCATCCACCCTCCTCCCATCCTT
TTTGCACCTTCCATTAAGGGCGCTATTTTGGGTCATACATACACGCTCAG
TAGCACACGTGCAACAATCATTCGATCATCTTCACCTTCCTTCCCCCCAT
CTCCCTTCCTTCTCCTCTTTACCCAACAGTTACTTGTCTTGCTTATCATT
ACTCTAATCAATGTATGCATACCTTGAATATTCTCTTCCTCCCTCCCTAT
GCCAGTATGACCACGTCCTCTTCCATCGCCGCCACCACCGGCGGTACCTC
TGGAGCAGCAGCTACAGCAGAAGGAGGGGCCTCCCTCCCTCCCTCCTTCT
CTCCCTCCTCTTCCTCCGTCCCTCCGTCCCTCCGTCCCTCCGTAGTCACC
TGACTTTTTCTGGCCAGCTTTTTCTCTCTTCGCTCTCGGCGGGCACGGGC
TTGTTCCTCCCTGGCCGCCTCCTTGCGCTTCACACACCTGCGTTTCCGAC
GCTTGCCATCTTCCTCACCTTCATCCTCCTCCTCCTCCCGCTGCCGGCGG
GCCGCGCCCATCTCGTCGTCGTCCTCCTCCTCGTCCTCGTCCTCCTCGTC
GTCACTCTTGTGCTCGGCGGCACGCTTGCGCTTGATGAAGGC
back to top

protein sequence of jgi.p|Nanoce1779_2|611250

>mRNA_10375-protein ID=mRNA_10375-protein|Name=jgi.p|Nanoce1779_2|611250|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MLIGCFSSPVFVGPLPFLRGENPSCRVHRWVHALLASTLVLPLFSIFEYQ
VHDGSLFSSFTSSFALSQDRSHPLTTRNPSRVGASEVRTSALFLPLSFYS
TLALTPSTLLPSFLHLPLRALFWVIHTRSVAHVQQSFDHLHLPSPHLPSF
SSLPNSYLSCLSLL*
back to top

mRNA from alignment at scaffold_55:38147..39265-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10375 ID=mRNA_10375|Name=jgi.p|Nanoce1779_2|611250|organism=Nannochloropsis oceanica|type=mRNA|length=1119bp|location=Sequence derived from alignment at scaffold_55:38147..39265- (Nannochloropsis oceanica)
CGCGTGAGATAGATGTTGATTGGATGTTTTTCGTCCCCCGTCTTTGTAGG
GCCACTCCCTTTTTTGAGGGGAGAGAATCCTTCTTGCCGCGTGCATAGGT
GGGTACACGCGTTGCTCGCTTCTACCCTCGTTCTCCCTCTTTTCTCTATC
TTTGAATATCAGGTGCATGATGGTAGCCTTTTCTCTTCATTTACGTCTTC
TTTTGCTTTGTCACAGGACCGAAGTCATCCTCTGACCACACGCAATCCCA
GCCGGGTGGGTGCGAGCGAGGTGAGGACATCGGCCCTCTTTCTTCCGTTA
TCGTTTTATTCCACCCTTGCCCTAACTCCATCCACCCTCCTCCCATCCTT
TTTGCACCTTCCATTAAGGGCGCTATTTTGGGTCATACATACACGCTCAG
TAGCACACGTGCAACAATCATTCGATCATCTTCACCTTCCTTCCCCCCAT
CTCCCTTCCTTCTCCTCTTTACCCAACAGTTACTTGTCTTGCTTATCATT
ACTCTAATCAATGTATGCATACCTTGAATATTCTCTTCCTCCCTCCCTAT
GCCAGTATGACCACGTCCTCTTCCATCGCCGCCACCACCGGCGGTACCTC
TGGAGCAGCAGCTACAGCAGAAGGAGGGGCCTCCCTCCCTCCCTCCTTCT
CTCCCTCCTCTTCCTCCGTCCCTCCGTCCCTCCGTCCCTCCGTAGTCACC
TGACTTTTTCTGGCCAGCTTTTTCTCTCTTCGCTCTCGGCGGGCACGGGC
TTGTTCCTCCCTGGCCGCCTCCTTGCGCTTCACACACCTGCGTTTCCGAC
GCTTGCCATCTTCCTCACTTAGGATGGGAGGGGAGGAAGGAGAGAGGGAG
GGAGGGAGGGAGGGACCGGAGTGAATTACATCCATTCGCAGGTATTTCGT
GGGAGAGACCAAAAAGTGGGTGGTCGCATGCCCGTCTACTCTCTCAATTG
CTCCCTTACTCCTTCCTTCCCTCTCTTCTCCCTCCGATTCTTACCCTTCA
TCCTCCTCCTCCTCCCGCTGCCGGCGGGCCGCGCCCATCTCGTCGTCGTC
CTCCTCCTCGTCCTCGTCCTCCTCGTCGTCACTCTTGTGCTCGGCGGCAC
GCTTGCGCTTGATGAAGGC
back to top

Coding sequence (CDS) from alignment at scaffold_55:38147..39265-

>mRNA_10375 ID=mRNA_10375|Name=jgi.p|Nanoce1779_2|611250|organism=Nannochloropsis oceanica|type=CDS|length=495bp|location=Sequence derived from alignment at scaffold_55:38147..39265- (Nannochloropsis oceanica)
ATGTTGATTGGATGTTTTTCGTCCCCCGTCTTTGTAGGGCCACTCCCTTT
TTTGAGGGGAGAGAATCCTTCTTGCCGCGTGCATAGGTGGGTACACGCGT
TGCTCGCTTCTACCCTCGTTCTCCCTCTTTTCTCTATCTTTGAATATCAG
GTGCATGATGGTAGCCTTTTCTCTTCATTTACGTCTTCTTTTGCTTTGTC
ACAGGACCGAAGTCATCCTCTGACCACACGCAATCCCAGCCGGGTGGGTG
CGAGCGAGGTGAGGACATCGGCCCTCTTTCTTCCGTTATCGTTTTATTCC
ACCCTTGCCCTAACTCCATCCACCCTCCTCCCATCCTTTTTGCACCTTCC
ATTAAGGGCGCTATTTTGGGTCATACATACACGCTCAGTAGCACACGTGC
AACAATCATTCGATCATCTTCACCTTCCTTCCCCCCATCTCCCTTCCTTC
TCCTCTTTACCCAACAGTTACTTGTCTTGCTTATCATTACTCTAA
back to top
Synonyms
Publications