Properties
| Property Name | Value |
|---|
| TranscriptId | 643381 |
| Track | FilteredModels2 |
| ProteinId | 643295 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_55 | supercontig | scaffold_55:18612..20856 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10371 ID=mRNA_10371|Name=jgi.p|Nanoce1779_2|643295|organism=Nannochloropsis oceanica|type=mRNA|length=678bp
ATGCCGAAGCGCCGAAAAGAATCTTCCTTTCGAAATATGAAGTGCATCGT
GTTTGCGGGTCTGCTGGCGTCCGCCACGGCGTTCATCGCCCCTGCTCCCC
GTGCGTCGTCCCGTTCGGTGATGAAGATGGGCCTCGAGAACCAGGTTGGG
TTCGACATTGAGACGGGAGGCAAGCCTTGGGACCCGTTTGGCTTTGCGGG
CGTCTCCGAACGCAACGGCCTCGGCATCTTACCCCACATCAAGTGGTTGC
AAGAGTCGGAGATCAAGCACGGTCGAACTGCCATGCTTGCTTTCCTCGGT
GTGATTGTTCCGGGCTCCCTGGGCATCTATGTGCCGACCTACCCCCAGGA
GCCTGACTTCACCAAGGCTTTCTCTGCGGCCCTGCAATCCAACCCCCTGG
GCATGGCGCAAATCGCCCTGGCAGTTGCGATCATTGAAGGCCACTACTAC
GCCGGCGACTTCTGGACTGGTGGAGGAGACCGTCAGGTGGGCGCCTTCGG
GTTTGACCCTCTAGGCTTCTCTAAGGGCAAGAGCGAGGCAGCGATCAAGT
CTATGCAGCTCAAGGAGATCAAGAATGGCCGCCTTGCGATGATTGCCATG
GCTGCCTTCGCCTCGGAGAAGTTCATCCCGGGATCTGTGCCCCTCCTCCA
CAGCGCATTCCCCACCCTGCCTATCTAA back to topprotein sequence of jgi.p|Nanoce1779_2|643295 >mRNA_10371-protein ID=mRNA_10371-protein|Name=jgi.p|Nanoce1779_2|643295|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MPKRRKESSFRNMKCIVFAGLLASATAFIAPAPRASSRSVMKMGLENQVG
FDIETGGKPWDPFGFAGVSERNGLGILPHIKWLQESEIKHGRTAMLAFLG
VIVPGSLGIYVPTYPQEPDFTKAFSAALQSNPLGMAQIALAVAIIEGHYY
AGDFWTGGGDRQVGAFGFDPLGFSKGKSEAAIKSMQLKEIKNGRLAMIAM
AAFASEKFIPGSVPLLHSAFPTLPI* back to topmRNA from alignment at scaffold_55:18612..20856- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10371 ID=mRNA_10371|Name=jgi.p|Nanoce1779_2|643295|organism=Nannochloropsis oceanica|type=mRNA|length=2245bp|location=Sequence derived from alignment at scaffold_55:18612..20856- (Nannochloropsis oceanica)
ATGCCGAAGCGCCGAAAAGAGTAAGATTATGGTAAGACGTGTAAAGATGG
TTGTGCACAAGAAGGCCCGAGCTCCACATGGGCCAAGGTGTCAGTGCGTG
TAACTAACACGATGTGGTGGTGGTGGTCCGAGCCCGCCAACGCACGGACG
GAGGAGGTGGCATTGAACGAAAGCAAATACGTAGCTCACACAAAGGTTGG
AAACTGCTTCACGCAAAAGACTGTTGATGCAGCAGCTAAATTTCTCTTCC
GTGCGTTATCTTGTTTACTTGGCAGCTCGAAATTCGTTCCCGGGAGCGTT
ACAATTTCTTTTCTGGGTTTGAGCAGGATTCACCTCAAGGAGCTGAAAGC
AACTGCCTTCTCCCACTCCCTTTCGGTTTGCATATCCCTGATGGACGGAC
TGGGTCATTTTCTGTCTACACATAGGGCCCTGCACAAAAAGGGCGAGACC
TGGCTAGCTCGTTCGACCCTCGATCCAGTTCGGGCTGCGTGTCTCAACAA
GCAGAAGCAATCTTCTTTCTTGGCACGCTTGCCTCCCTCCACATGCCATG
TCCCCAAGGCAACGCACCGCTGCACCGAATCACAACACACAAAACTTGCG
CAACGAGCATGATGTCAATCTTTCTTACATTTAGATGCACCATGATGCCA
GACCTACCGCCAGGCGAACTGCAGTGGGCACACAAACATCCTCGGCCTCC
TCTTGTCGCCATCCCTCTGCTCACAGTCCGCACCCCACGACCACATCACA
ACACAGATCTTCCTTTCGAAATATGAAGTGCATCGTGTTTGCGGGTCTGC
TGGCGTCCGCCACGGCGTTCATCGCCCCTGCTCCCCGTGCGTCGGTAAGT
ATGCCTTCAACTAGATCGGTGTGAGGGTAGATGGGAGGGAAGCAGACCAA
CCAGGCGGAGAGCTTCGATTAAATCGATACCATATTCGTTCACACGTTCA
CAGTCCCGTTCGGTGATGAAGATGGGCCTCGAGAACCAGGTTGGGTTCGA
CATTGAGACGGGAGGCAAGCCTTGGGACCCGTTTGGCTTTGCGGGCGTCT
CCGAACGCAACGGCCTCGGCATCTTACCCCACATCAAGTGGTTGCAAGAG
TCGGAGGTGGGGAAGGAGGATGGGAAGGAGGGAGGAAGGGAGGGGTGGGG
AGGATAGGATGGGTAGCATCTTAAGCTTAATTTGGTGGATGAAAAGCAGA
AATAGAGGAAGGAAAGACGGTACACACTCACCCGCGTCTACCCTGCCCTT
TTCCCCTTTCCTTCTTTTTTCCAACCACAGATCAAGCACGGTCGAACTGC
CATGCTTGCTTTCCTCGGTGTGATTGTTCCGGGCTCCCTGGGCATCTATG
TGCCGACCTACCCCCAGGTGAGGGAAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGGAGAAGGCAGGAATCGGAGGAGTACGAAGGGGAAAGTGACATG
TGGCTGTGACCACTCACACACTTCCTCCCTTTCCCGTCATTGATAGGAGC
CTGACTTCACCAAGGCTTTCTCTGCGGCCCTGCAATCCAACCCCCTGGGC
ATGGCGCAAATCGCCCTGGCAGTTGCGATCATTGAAGGCCACTACTACGC
CGGTACATCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTTCCTTCCTTCCTCCTTTCCGTCTTCTCATCCCCAC
TCACGCACATCGTCTTCCTATCCCTCCTCCCGGCCTTCCTCTCCTGCAGG
CGACTTCTGGACTGGTGGAGGAGACCGTCAGGTGGGCGCCTTCGGGTTTG
ACCCTCTAGGCTTCTCTAAGGTACACACATGTCATATCATGCCACTTCCC
CCCCTCCTTCCCCCCTCCCCTCCCTCTCTCCTTTCTTTTCTCCAATTCAC
CTCCAAGATGCTTAAGTGTCACGTTTCTTCCTTCCTTTCTTCCCCCCTTC
CCTCCCTCTCTCCTTCCCTTCCTCCCTCCTACCCCCTTTTCCTTTTCTCA
TCCGCCACTGACCCTTTCGTCTCTTCCTCCCTCTCCTTCTTTTCGTTGGT
GTCCCTCCCTCCTTCCCTCCCTGCCTCCCTCTCTTTCCACAGGGCAAGAG
CGAGGCAGCGATCAAGTCTATGCAGCTCAAGGAGATCAAGAATGGCCGCC
TTGCGATGATTGCCATGGCTGCCTTCGCCTCGGAGAAGTTCATCCCGGGA
TCTGTGCCCCTCCTCCACAGCGCATTCCCCACCCTGCCTATCTAA back to topCoding sequence (CDS) from alignment at scaffold_55:18612..20856- >mRNA_10371 ID=mRNA_10371|Name=jgi.p|Nanoce1779_2|643295|organism=Nannochloropsis oceanica|type=CDS|length=4746bp|location=Sequence derived from alignment at scaffold_55:18612..20856- (Nannochloropsis oceanica)
GGCAAGAGCGAGGCAGCGATCAAGTCTATGCAGCTCAAGGAGATCAAGAA
TGGCCGCCTTGCGATGATTGCCATGGCTGCCTTCGCCTCGGAGAAGTTCA
TCCCGGGATCTGTGCCCCTCCTCCACAGCGCATTCCCCACCCTGCCTATC
TAAGCGACTTCTGGACTGGTGGAGGAGACCGTCAGGTGGGCGCCTTCGGG
TTTGACCCTCTAGGCTTCTCTAAGGAGCCTGACTTCACCAAGGCTTTCTC
TGCGGCCCTGCAATCCAACCCCCTGGGCATGGCGCAAATCGCCCTGGCAG
TTGCGATCATTGAAGGCCACTACTACGCCGATCAAGCACGGTCGAACTGC
CATGCTTGCTTTCCTCGGTGTGATTGTTCCGGGCTCCCTGGGCATCTATG
TGCCGACCTACCCCCAGTCCCGTTCGGTGATGAAGATGGGCCTCGAGAAC
CAGGTTGGGTTCGACATTGAGACGGGAGGCAAGCCTTGGGACCCGTTTGG
CTTTGCGGGCGTCTCCGAACGCAACGGCCTCGGCATCTTACCCCACATCA
AGTGGTTGCAAGAGTCGGAGATCTTCCTTTCGAAATATGAAGTGCATCGT
GTTTGCGGGTCTGCTGGCGTCCGCCACGGCGTTCATCGCCCCTGCTCCCC
GTGCGTCGATGCCGAAGCGCCGAAAAGAGGCAAGAGCGAGGCAGCGATCA
AGTCTATGCAGCTCAAGGAGATCAAGAATGGCCGCCTTGCGATGATTGCC
ATGGCTGCCTTCGCCTCGGAGAAGTTCATCCCGGGATCTGTGCCCCTCCT
CCACAGCGCATTCCCCACCCTGCCTATCTAAGCGACTTCTGGACTGGTGG
AGGAGACCGTCAGGTGGGCGCCTTCGGGTTTGACCCTCTAGGCTTCTCTA
AGGAGCCTGACTTCACCAAGGCTTTCTCTGCGGCCCTGCAATCCAACCCC
CTGGGCATGGCGCAAATCGCCCTGGCAGTTGCGATCATTGAAGGCCACTA
CTACGCCGATCAAGCACGGTCGAACTGCCATGCTTGCTTTCCTCGGTGTG
ATTGTTCCGGGCTCCCTGGGCATCTATGTGCCGACCTACCCCCAGTCCCG
TTCGGTGATGAAGATGGGCCTCGAGAACCAGGTTGGGTTCGACATTGAGA
CGGGAGGCAAGCCTTGGGACCCGTTTGGCTTTGCGGGCGTCTCCGAACGC
AACGGCCTCGGCATCTTACCCCACATCAAGTGGTTGCAAGAGTCGGAGAT
CTTCCTTTCGAAATATGAAGTGCATCGTGTTTGCGGGTCTGCTGGCGTCC
GCCACGGCGTTCATCGCCCCTGCTCCCCGTGCGTCGATGCCGAAGCGCCG
AAAAGAGGCAAGAGCGAGGCAGCGATCAAGTCTATGCAGCTCAAGGAGAT
CAAGAATGGCCGCCTTGCGATGATTGCCATGGCTGCCTTCGCCTCGGAGA
AGTTCATCCCGGGATCTGTGCCCCTCCTCCACAGCGCATTCCCCACCCTG
CCTATCTAAGCGACTTCTGGACTGGTGGAGGAGACCGTCAGGTGGGCGCC
TTCGGGTTTGACCCTCTAGGCTTCTCTAAGGAGCCTGACTTCACCAAGGC
TTTCTCTGCGGCCCTGCAATCCAACCCCCTGGGCATGGCGCAAATCGCCC
TGGCAGTTGCGATCATTGAAGGCCACTACTACGCCGATCAAGCACGGTCG
AACTGCCATGCTTGCTTTCCTCGGTGTGATTGTTCCGGGCTCCCTGGGCA
TCTATGTGCCGACCTACCCCCAGTCCCGTTCGGTGATGAAGATGGGCCTC
GAGAACCAGGTTGGGTTCGACATTGAGACGGGAGGCAAGCCTTGGGACCC
GTTTGGCTTTGCGGGCGTCTCCGAACGCAACGGCCTCGGCATCTTACCCC
ACATCAAGTGGTTGCAAGAGTCGGAGATCTTCCTTTCGAAATATGAAGTG
CATCGTGTTTGCGGGTCTGCTGGCGTCCGCCACGGCGTTCATCGCCCCTG
CTCCCCGTGCGTCGATGCCGAAGCGCCGAAAAGAGGCAAGAGCGAGGCAG
CGATCAAGTCTATGCAGCTCAAGGAGATCAAGAATGGCCGCCTTGCGATG
ATTGCCATGGCTGCCTTCGCCTCGGAGAAGTTCATCCCGGGATCTGTGCC
CCTCCTCCACAGCGCATTCCCCACCCTGCCTATCTAAGCGACTTCTGGAC
TGGTGGAGGAGACCGTCAGGTGGGCGCCTTCGGGTTTGACCCTCTAGGCT
TCTCTAAGGAGCCTGACTTCACCAAGGCTTTCTCTGCGGCCCTGCAATCC
AACCCCCTGGGCATGGCGCAAATCGCCCTGGCAGTTGCGATCATTGAAGG
CCACTACTACGCCGATCAAGCACGGTCGAACTGCCATGCTTGCTTTCCTC
GGTGTGATTGTTCCGGGCTCCCTGGGCATCTATGTGCCGACCTACCCCCA
GTCCCGTTCGGTGATGAAGATGGGCCTCGAGAACCAGGTTGGGTTCGACA
TTGAGACGGGAGGCAAGCCTTGGGACCCGTTTGGCTTTGCGGGCGTCTCC
GAACGCAACGGCCTCGGCATCTTACCCCACATCAAGTGGTTGCAAGAGTC
GGAGATCTTCCTTTCGAAATATGAAGTGCATCGTGTTTGCGGGTCTGCTG
GCGTCCGCCACGGCGTTCATCGCCCCTGCTCCCCGTGCGTCGATGCCGAA
GCGCCGAAAAGAGGCAAGAGCGAGGCAGCGATCAAGTCTATGCAGCTCAA
GGAGATCAAGAATGGCCGCCTTGCGATGATTGCCATGGCTGCCTTCGCCT
CGGAGAAGTTCATCCCGGGATCTGTGCCCCTCCTCCACAGCGCATTCCCC
ACCCTGCCTATCTAAGCGACTTCTGGACTGGTGGAGGAGACCGTCAGGTG
GGCGCCTTCGGGTTTGACCCTCTAGGCTTCTCTAAGGAGCCTGACTTCAC
CAAGGCTTTCTCTGCGGCCCTGCAATCCAACCCCCTGGGCATGGCGCAAA
TCGCCCTGGCAGTTGCGATCATTGAAGGCCACTACTACGCCGATCAAGCA
CGGTCGAACTGCCATGCTTGCTTTCCTCGGTGTGATTGTTCCGGGCTCCC
TGGGCATCTATGTGCCGACCTACCCCCAGTCCCGTTCGGTGATGAAGATG
GGCCTCGAGAACCAGGTTGGGTTCGACATTGAGACGGGAGGCAAGCCTTG
GGACCCGTTTGGCTTTGCGGGCGTCTCCGAACGCAACGGCCTCGGCATCT
TACCCCACATCAAGTGGTTGCAAGAGTCGGAGATCTTCCTTTCGAAATAT
GAAGTGCATCGTGTTTGCGGGTCTGCTGGCGTCCGCCACGGCGTTCATCG
CCCCTGCTCCCCGTGCGTCGATGCCGAAGCGCCGAAAAGAGGCAAGAGCG
AGGCAGCGATCAAGTCTATGCAGCTCAAGGAGATCAAGAATGGCCGCCTT
GCGATGATTGCCATGGCTGCCTTCGCCTCGGAGAAGTTCATCCCGGGATC
TGTGCCCCTCCTCCACAGCGCATTCCCCACCCTGCCTATCTAAGCGACTT
CTGGACTGGTGGAGGAGACCGTCAGGTGGGCGCCTTCGGGTTTGACCCTC
TAGGCTTCTCTAAGGAGCCTGACTTCACCAAGGCTTTCTCTGCGGCCCTG
CAATCCAACCCCCTGGGCATGGCGCAAATCGCCCTGGCAGTTGCGATCAT
TGAAGGCCACTACTACGCCGATCAAGCACGGTCGAACTGCCATGCTTGCT
TTCCTCGGTGTGATTGTTCCGGGCTCCCTGGGCATCTATGTGCCGACCTA
CCCCCAGTCCCGTTCGGTGATGAAGATGGGCCTCGAGAACCAGGTTGGGT
TCGACATTGAGACGGGAGGCAAGCCTTGGGACCCGTTTGGCTTTGCGGGC
GTCTCCGAACGCAACGGCCTCGGCATCTTACCCCACATCAAGTGGTTGCA
AGAGTCGGAGATCTTCCTTTCGAAATATGAAGTGCATCGTGTTTGCGGGT
CTGCTGGCGTCCGCCACGGCGTTCATCGCCCCTGCTCCCCGTGCGTCGAT
GCCGAAGCGCCGAAAAGAGGCAAGAGCGAGGCAGCGATCAAGTCTATGCA
GCTCAAGGAGATCAAGAATGGCCGCCTTGCGATGATTGCCATGGCTGCCT
TCGCCTCGGAGAAGTTCATCCCGGGATCTGTGCCCCTCCTCCACAGCGCA
TTCCCCACCCTGCCTATCTAAGCGACTTCTGGACTGGTGGAGGAGACCGT
CAGGTGGGCGCCTTCGGGTTTGACCCTCTAGGCTTCTCTAAGGAGCCTGA
CTTCACCAAGGCTTTCTCTGCGGCCCTGCAATCCAACCCCCTGGGCATGG
CGCAAATCGCCCTGGCAGTTGCGATCATTGAAGGCCACTACTACGCCGAT
CAAGCACGGTCGAACTGCCATGCTTGCTTTCCTCGGTGTGATTGTTCCGG
GCTCCCTGGGCATCTATGTGCCGACCTACCCCCAGTCCCGTTCGGTGATG
AAGATGGGCCTCGAGAACCAGGTTGGGTTCGACATTGAGACGGGAGGCAA
GCCTTGGGACCCGTTTGGCTTTGCGGGCGTCTCCGAACGCAACGGCCTCG
GCATCTTACCCCACATCAAGTGGTTGCAAGAGTCGGAGATCTTCCTTTCG
AAATATGAAGTGCATCGTGTTTGCGGGTCTGCTGGCGTCCGCCACGGCGT
TCATCGCCCCTGCTCCCCGTGCGTCGATGCCGAAGCGCCGAAAAGA back to top
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