jgi.p|Nanoce1779_2|634080, mRNA_10366 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|634080
Unique Name	mRNA_10366
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3247
Alignment location	scaffold_55:2949..6195 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	634166
Track	FilteredModels2
ProteinId	634080

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_55	supercontig	scaffold_55:2949..6195 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|634080	gene_10366	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|634080	mRNA_10366-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10366	CDS_10366	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_55:2949..6195+
coding sequence from alignment at scaffold_55:2949..6195+

mRNA sequence

>mRNA_10366 ID=mRNA_10366|Name=jgi.p|Nanoce1779_2|634080|organism=Nannochloropsis oceanica|type=mRNA|length=3247bp
ACAGACTCACAACCATGTTGAAACCTCTGTCCGAGGACGTGGATGATGAG
CTGGGCGGGAGTGGCGCTACGGATAAGGAACTCGACTGCAGCGAGGCATA
CTTACTGGAGGATGAACACCGGCAGGAGCACATGCCCAACCGTGTCAAAC
AGATCCCGCACGGTAATTTGACCACATTCTCTGGCCAAAGTACACCACCA
CCCCCTCTCAGCAGCGCCGCTCAATGTAAAGCCACGTCCCTGGTACTGGC
CTCGATCCGCGCCTTACTTGCTTTTGCTTGCCTTCGGGGCTTTGTATTTT
GGCGTACGCCCGTATCTCTTCTCCACGCATGACTCGAACATGACCACCAC
CAGCACCACGGATGCAGTAGCACTCCCCATCCTGGCTCCGTCTTCAACTG
TTGCCTTGACTAAGTCTCCAGAAGTCAGCGAGGGTCCCAATACGTCCTTG
CCTCCTATGAAGAAGCCCGCCCCCTCTCCATATTCGCTTCTCAACAGCAC
TGCCGCCCTCAGTAGCGTCATCCCGTCAACTTTATCCTCCTCTAATGAGA
CCAGCGCAATCGTTCCTCCATTTTCTCCTCCTTTCATTCCCATCGAGATC
CCCGATGCCGTCTTGGAGGAGGCTCCTGGGTCTCCTCCTTCCTCCTCCTC
CTCATCATTCCCCTCGCCCCACAAAAATTTCTCTTCCGCCTTTTCTTCCT
CCTTATCTACTGCCTCGTCGTCGTCTTCCTCTCCTTCTACCAGCTCTTCT
CCTCACCGCTTGTCTTCCGCGACCTCTTCTTTTTCCTCTTCCACCTCCTC
CTCCATCCCCCTGCCCTCTATCCCTCCTCCGTCAACCCCCCTCCATATCC
AAGCCAGCTCTGCTGAGTATGGAAGCTTTGCGAAAGATACTTTGCAACTT
TATGGGTGGGATTGATTTTGGAAGCGAACCGTGCCATTACCTTGCGAGTG
CTCAATCCCTCTCCTCCAAGCATGCCAGCTACGTCGTCGCTCGCTGCCTC
TTCCTCGTCCTCATCCGACAATAGGACCGACATTTCGCCAAACCTCTCGA
CTTACGATTGGTGTGTCAAACAACACAACGGCACTATCCTTCTCTCTTTA
CGCGCCGTCGGCTCCCTGGTCAAGGGCTTCTACTGCACGCAGCCTGGGGC
CGGCCTCTCCATCCATGTCACTGAGTACCCTTCTCTCCGCACCTATTCCA
CTACCGCCGCAGTCTGCAAGGATGTTCGGCGCGAAATGCGGGCCTTGACA
CGACAGGATCGTCAGATGTACTTGAAGAGCCTCAATACCTTCTATCGCGT
GCCTTTGGCGGAAGGTCGGGCGCGTTTCGGGCCTCGGTTTGCGAATAACC
CTTTATTGACCTCTGCGCACAACAGCCAGACATGGTGTCTACATGGACCT
AACCAGTTTTTGGCAGTGCATTCGGCGTTTGTGTATTGGGGGGAGCAGAA
TATGAAGAGGATAAGTTACGTGGATGGTTTACGGGAAAGAGGGGGAGGGG
CTGGCCGGGGGGACGAGGATGTAAACCAATTGTCTTCGGAAGCAAGGCCA
GCAGCTGGTGCGCAGCGGGCGTCGGGGAAGGGGGGGGCTCTGCTAGGCGC
CATTCCGTATTGGGACTTTCATATTGATACTCATGAGTACGGCTCACAGT
GGTGGTGGCGTAACCCTTTCTTTCAGAATGATGATGATGAAGGCTTTGGG
CCTATCGACACAAGCCCCGCAGTGGGTCATGCGGTGGAGGGCAGTGGGCG
TTTTGCTCGCATGCCGATGGTTCGAGGGGATCAATTGTCGAAGGAGGTTC
ATGATGCGTACGACCCTGGTGTGGATGATTTCGGTTTCGTGACAGGGAGC
CCTTTTACTCTGAATTCTAGCCCCTTTGTCACGCGCAGCGCAACAGTATG
TGGCTTACCGATGGCCCTTCCGATGGCGCCTGCGCAGAACCTCTTCGATT
GCTATGAAAATTTTGACACATGGAGGGAGGCAACGACCTGTATGTATATG
CAGGTGCACTTGCAGCTCCACTCCCACCTTGGGGGCGGGGCCTGGAATTG
TGGCGTGGACCTCAAGTCATTTCACTCCTCTTATCCGCAATATCCTCCTG
AGCTCTTGTCCTTTCTCGGCGTGTCGGGTCGCCATGTGTGGTCGACGCTC
AAGACCAGAAATACTCGTGGACTGATCCGTTACCGTGAGTGCGACATTCA
CGCGGGACACTGCTCGTGCCCGGATTTAGACACAGAAAGGATGCCCTACC
CCAAACTGTACAGTCTTCTGGCGTCGGCCTTGCGAGGAGCAAGTCGGACG
TGGCCTGGGGAGTTTTTCATCGGAACTTATCGAGACACAGAGGAGTTACG
GTTTAAGAAAAATGACGGAACCTTCTTTGAATGGGAGGACCAGGAACGCT
TGCTCCGAATGGTGGCGCGGTTGTGGTGTGAGGCGGCAGTGGATGGGCAT
TTTGTGTCAATGGCTTCTATCAACGACCCTGTATTTTACGCGGCGCATGT
GTACTTTGACCGCTTGTCGCACTTCTTGGCATTATCGCCGGCCTTTGCCG
AGAGAGGTTTCAATCGAACGTGGAACTTTGATGACGAAGAGGGTGGGGCC
AGGAGGCAGGAAGCCGAAGATGGAGGAGAAGATATGAAGCAGAATAGGGA
GCAATGGGATCAGGGCGAGTACAGAGAAAGGGAAGAGCGTGAGAATGGAT
TGCAAGGAGGAGGCCCGCGGAGGCTGAGGGGCGCGAATCGACTACAAGAA
GAGCCATCAAGCGACAACCACGGCCAGGACGACGGAGAGATGGAGACGGC
GAGAAGTAAAAACGACGACACGGAGCGTATCTATCACCAAGTCCCCCGGG
AAGAGTGTCTGGGAGGGCAGTACCAGGACTCGTCACCCTTCACACCTTTC
CTGTTGATGTCTGTGGATGAGGAAAGGCGGCTTGGAGACATCCCCGATAA
AGACTATGGCGACTCCAACCCGCACCGGAACTACATCATGAGGGATTTAG
ACGCGCTTATGCATCCCCTCCATCCCGCCTTGCCCTATGTCTACGATGAT
CTGGTGCATTGGGGCGGCGAAATGTGGATGCCGCGGGCAGAGTAAATGAA
TGGGAGTTGCACGCTATGGATAGGGACCATGTAGAGCCAATCTAGATTTA
GAGGGCTAATTTGAAGCAACTGTTTGTGTAACTTAGCACTCGTTCACAGA
ATAAATCATATCAAAAGTATTTGCAAGAAGAAAATGTACAAATCATG

protein sequence of jgi.p|Nanoce1779_2|634080

>mRNA_10366-protein ID=mRNA_10366-protein|Name=jgi.p|Nanoce1779_2|634080|organism=Nannochloropsis oceanica|type=polypeptide|length=708bp
MPATSSLAASSSSSSDNRTDISPNLSTYDWCVKQHNGTILLSLRAVGSLV
KGFYCTQPGAGLSIHVTEYPSLRTYSTTAAVCKDVRREMRALTRQDRQMY
LKSLNTFYRVPLAEGRARFGPRFANNPLLTSAHNSQTWCLHGPNQFLAVH
SAFVYWGEQNMKRISYVDGLRERGGGAGRGDEDVNQLSSEARPAAGAQRA
SGKGGALLGAIPYWDFHIDTHEYGSQWWWRNPFFQNDDDEGFGPIDTSPA
VGHAVEGSGRFARMPMVRGDQLSKEVHDAYDPGVDDFGFVTGSPFTLNSS
PFVTRSATVCGLPMALPMAPAQNLFDCYENFDTWREATTCMYMQVHLQLH
SHLGGGAWNCGVDLKSFHSSYPQYPPELLSFLGVSGRHVWSTLKTRNTRG
LIRYRECDIHAGHCSCPDLDTERMPYPKLYSLLASALRGASRTWPGEFFI
GTYRDTEELRFKKNDGTFFEWEDQERLLRMVARLWCEAAVDGHFVSMASI
NDPVFYAAHVYFDRLSHFLALSPAFAERGFNRTWNFDDEEGGARRQEAED
GGEDMKQNREQWDQGEYREREERENGLQGGGPRRLRGANRLQEEPSSDNH
GQDDGEMETARSKNDDTERIYHQVPREECLGGQYQDSSPFTPFLLMSVDE
ERRLGDIPDKDYGDSNPHRNYIMRDLDALMHPLHPALPYVYDDLVHWGGE
MWMPRAE*

mRNA from alignment at scaffold_55:2949..6195+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10366 ID=mRNA_10366|Name=jgi.p|Nanoce1779_2|634080|organism=Nannochloropsis oceanica|type=mRNA|length=3247bp|location=Sequence derived from alignment at scaffold_55:2949..6195+ (Nannochloropsis oceanica)
ACAGACTCACAACCATGTTGAAACCTCTGTCCGAGGACGTGGATGATGAG
CTGGGCGGGAGTGGCGCTACGGATAAGGAACTCGACTGCAGCGAGGCATA
CTTACTGGAGGATGAACACCGGCAGGAGCACATGCCCAACCGTGTCAAAC
AGATCCCGCACGGTAATTTGACCACATTCTCTGGCCAAAGTACACCACCA
CCCCCTCTCAGCAGCGCCGCTCAATGTAAAGCCACGTCCCTGGTACTGGC
CTCGATCCGCGCCTTACTTGCTTTTGCTTGCCTTCGGGGCTTTGTATTTT
GGCGTACGCCCGTATCTCTTCTCCACGCATGACTCGAACATGACCACCAC
CAGCACCACGGATGCAGTAGCACTCCCCATCCTGGCTCCGTCTTCAACTG
TTGCCTTGACTAAGTCTCCAGAAGTCAGCGAGGGTCCCAATACGTCCTTG
CCTCCTATGAAGAAGCCCGCCCCCTCTCCATATTCGCTTCTCAACAGCAC
TGCCGCCCTCAGTAGCGTCATCCCGTCAACTTTATCCTCCTCTAATGAGA
CCAGCGCAATCGTTCCTCCATTTTCTCCTCCTTTCATTCCCATCGAGATC
CCCGATGCCGTCTTGGAGGAGGCTCCTGGGTCTCCTCCTTCCTCCTCCTC
CTCATCATTCCCCTCGCCCCACAAAAATTTCTCTTCCGCCTTTTCTTCCT
CCTTATCTACTGCCTCGTCGTCGTCTTCCTCTCCTTCTACCAGCTCTTCT
CCTCACCGCTTGTCTTCCGCGACCTCTTCTTTTTCCTCTTCCACCTCCTC
CTCCATCCCCCTGCCCTCTATCCCTCCTCCGTCAACCCCCCTCCATATCC
AAGCCAGCTCTGCTGAGTATGGAAGCTTTGCGAAAGATACTTTGCAACTT
TATGGGTGGGATTGATTTTGGAAGCGAACCGTGCCATTACCTTGCGAGTG
CTCAATCCCTCTCCTCCAAGCATGCCAGCTACGTCGTCGCTCGCTGCCTC
TTCCTCGTCCTCATCCGACAATAGGACCGACATTTCGCCAAACCTCTCGA
CTTACGATTGGTGTGTCAAACAACACAACGGCACTATCCTTCTCTCTTTA
CGCGCCGTCGGCTCCCTGGTCAAGGGCTTCTACTGCACGCAGCCTGGGGC
CGGCCTCTCCATCCATGTCACTGAGTACCCTTCTCTCCGCACCTATTCCA
CTACCGCCGCAGTCTGCAAGGATGTTCGGCGCGAAATGCGGGCCTTGACA
CGACAGGATCGTCAGATGTACTTGAAGAGCCTCAATACCTTCTATCGCGT
GCCTTTGGCGGAAGGTCGGGCGCGTTTCGGGCCTCGGTTTGCGAATAACC
CTTTATTGACCTCTGCGCACAACAGCCAGACATGGTGTCTACATGGACCT
AACCAGTTTTTGGCAGTGCATTCGGCGTTTGTGTATTGGGGGGAGCAGAA
TATGAAGAGGATAAGTTACGTGGATGGTTTACGGGAAAGAGGGGGAGGGG
CTGGCCGGGGGGACGAGGATGTAAACCAATTGTCTTCGGAAGCAAGGCCA
GCAGCTGGTGCGCAGCGGGCGTCGGGGAAGGGGGGGGCTCTGCTAGGCGC
CATTCCGTATTGGGACTTTCATATTGATACTCATGAGTACGGCTCACAGT
GGTGGTGGCGTAACCCTTTCTTTCAGAATGATGATGATGAAGGCTTTGGG
CCTATCGACACAAGCCCCGCAGTGGGTCATGCGGTGGAGGGCAGTGGGCG
TTTTGCTCGCATGCCGATGGTTCGAGGGGATCAATTGTCGAAGGAGGTTC
ATGATGCGTACGACCCTGGTGTGGATGATTTCGGTTTCGTGACAGGGAGC
CCTTTTACTCTGAATTCTAGCCCCTTTGTCACGCGCAGCGCAACAGTATG
TGGCTTACCGATGGCCCTTCCGATGGCGCCTGCGCAGAACCTCTTCGATT
GCTATGAAAATTTTGACACATGGAGGGAGGCAACGACCTGTATGTATATG
CAGGTGCACTTGCAGCTCCACTCCCACCTTGGGGGCGGGGCCTGGAATTG
TGGCGTGGACCTCAAGTCATTTCACTCCTCTTATCCGCAATATCCTCCTG
AGCTCTTGTCCTTTCTCGGCGTGTCGGGTCGCCATGTGTGGTCGACGCTC
AAGACCAGAAATACTCGTGGACTGATCCGTTACCGTGAGTGCGACATTCA
CGCGGGACACTGCTCGTGCCCGGATTTAGACACAGAAAGGATGCCCTACC
CCAAACTGTACAGTCTTCTGGCGTCGGCCTTGCGAGGAGCAAGTCGGACG
TGGCCTGGGGAGTTTTTCATCGGAACTTATCGAGACACAGAGGAGTTACG
GTTTAAGAAAAATGACGGAACCTTCTTTGAATGGGAGGACCAGGAACGCT
TGCTCCGAATGGTGGCGCGGTTGTGGTGTGAGGCGGCAGTGGATGGGCAT
TTTGTGTCAATGGCTTCTATCAACGACCCTGTATTTTACGCGGCGCATGT
GTACTTTGACCGCTTGTCGCACTTCTTGGCATTATCGCCGGCCTTTGCCG
AGAGAGGTTTCAATCGAACGTGGAACTTTGATGACGAAGAGGGTGGGGCC
AGGAGGCAGGAAGCCGAAGATGGAGGAGAAGATATGAAGCAGAATAGGGA
GCAATGGGATCAGGGCGAGTACAGAGAAAGGGAAGAGCGTGAGAATGGAT
TGCAAGGAGGAGGCCCGCGGAGGCTGAGGGGCGCGAATCGACTACAAGAA
GAGCCATCAAGCGACAACCACGGCCAGGACGACGGAGAGATGGAGACGGC
GAGAAGTAAAAACGACGACACGGAGCGTATCTATCACCAAGTCCCCCGGG
AAGAGTGTCTGGGAGGGCAGTACCAGGACTCGTCACCCTTCACACCTTTC
CTGTTGATGTCTGTGGATGAGGAAAGGCGGCTTGGAGACATCCCCGATAA
AGACTATGGCGACTCCAACCCGCACCGGAACTACATCATGAGGGATTTAG
ACGCGCTTATGCATCCCCTCCATCCCGCCTTGCCCTATGTCTACGATGAT
CTGGTGCATTGGGGCGGCGAAATGTGGATGCCGCGGGCAGAGTAAATGAA
TGGGAGTTGCACGCTATGGATAGGGACCATGTAGAGCCAATCTAGATTTA
GAGGGCTAATTTGAAGCAACTGTTTGTGTAACTTAGCACTCGTTCACAGA
ATAAATCATATCAAAAGTATTTGCAAGAAGAAAATGTACAAATCATG

Coding sequence (CDS) from alignment at scaffold_55:2949..6195+

>mRNA_10366 ID=mRNA_10366|Name=jgi.p|Nanoce1779_2|634080|organism=Nannochloropsis oceanica|type=CDS|length=2124bp|location=Sequence derived from alignment at scaffold_55:2949..6195+ (Nannochloropsis oceanica)
ATGCCAGCTACGTCGTCGCTCGCTGCCTCTTCCTCGTCCTCATCCGACAA
TAGGACCGACATTTCGCCAAACCTCTCGACTTACGATTGGTGTGTCAAAC
AACACAACGGCACTATCCTTCTCTCTTTACGCGCCGTCGGCTCCCTGGTC
AAGGGCTTCTACTGCACGCAGCCTGGGGCCGGCCTCTCCATCCATGTCAC
TGAGTACCCTTCTCTCCGCACCTATTCCACTACCGCCGCAGTCTGCAAGG
ATGTTCGGCGCGAAATGCGGGCCTTGACACGACAGGATCGTCAGATGTAC
TTGAAGAGCCTCAATACCTTCTATCGCGTGCCTTTGGCGGAAGGTCGGGC
GCGTTTCGGGCCTCGGTTTGCGAATAACCCTTTATTGACCTCTGCGCACA
ACAGCCAGACATGGTGTCTACATGGACCTAACCAGTTTTTGGCAGTGCAT
TCGGCGTTTGTGTATTGGGGGGAGCAGAATATGAAGAGGATAAGTTACGT
GGATGGTTTACGGGAAAGAGGGGGAGGGGCTGGCCGGGGGGACGAGGATG
TAAACCAATTGTCTTCGGAAGCAAGGCCAGCAGCTGGTGCGCAGCGGGCG
TCGGGGAAGGGGGGGGCTCTGCTAGGCGCCATTCCGTATTGGGACTTTCA
TATTGATACTCATGAGTACGGCTCACAGTGGTGGTGGCGTAACCCTTTCT
TTCAGAATGATGATGATGAAGGCTTTGGGCCTATCGACACAAGCCCCGCA
GTGGGTCATGCGGTGGAGGGCAGTGGGCGTTTTGCTCGCATGCCGATGGT
TCGAGGGGATCAATTGTCGAAGGAGGTTCATGATGCGTACGACCCTGGTG
TGGATGATTTCGGTTTCGTGACAGGGAGCCCTTTTACTCTGAATTCTAGC
CCCTTTGTCACGCGCAGCGCAACAGTATGTGGCTTACCGATGGCCCTTCC
GATGGCGCCTGCGCAGAACCTCTTCGATTGCTATGAAAATTTTGACACAT
GGAGGGAGGCAACGACCTGTATGTATATGCAGGTGCACTTGCAGCTCCAC
TCCCACCTTGGGGGCGGGGCCTGGAATTGTGGCGTGGACCTCAAGTCATT
TCACTCCTCTTATCCGCAATATCCTCCTGAGCTCTTGTCCTTTCTCGGCG
TGTCGGGTCGCCATGTGTGGTCGACGCTCAAGACCAGAAATACTCGTGGA
CTGATCCGTTACCGTGAGTGCGACATTCACGCGGGACACTGCTCGTGCCC
GGATTTAGACACAGAAAGGATGCCCTACCCCAAACTGTACAGTCTTCTGG
CGTCGGCCTTGCGAGGAGCAAGTCGGACGTGGCCTGGGGAGTTTTTCATC
GGAACTTATCGAGACACAGAGGAGTTACGGTTTAAGAAAAATGACGGAAC
CTTCTTTGAATGGGAGGACCAGGAACGCTTGCTCCGAATGGTGGCGCGGT
TGTGGTGTGAGGCGGCAGTGGATGGGCATTTTGTGTCAATGGCTTCTATC
AACGACCCTGTATTTTACGCGGCGCATGTGTACTTTGACCGCTTGTCGCA
CTTCTTGGCATTATCGCCGGCCTTTGCCGAGAGAGGTTTCAATCGAACGT
GGAACTTTGATGACGAAGAGGGTGGGGCCAGGAGGCAGGAAGCCGAAGAT
GGAGGAGAAGATATGAAGCAGAATAGGGAGCAATGGGATCAGGGCGAGTA
CAGAGAAAGGGAAGAGCGTGAGAATGGATTGCAAGGAGGAGGCCCGCGGA
GGCTGAGGGGCGCGAATCGACTACAAGAAGAGCCATCAAGCGACAACCAC
GGCCAGGACGACGGAGAGATGGAGACGGCGAGAAGTAAAAACGACGACAC
GGAGCGTATCTATCACCAAGTCCCCCGGGAAGAGTGTCTGGGAGGGCAGT
ACCAGGACTCGTCACCCTTCACACCTTTCCTGTTGATGTCTGTGGATGAG
GAAAGGCGGCTTGGAGACATCCCCGATAAAGACTATGGCGACTCCAACCC
GCACCGGAACTACATCATGAGGGATTTAGACGCGCTTATGCATCCCCTCC
ATCCCGCCTTGCCCTATGTCTACGATGATCTGGTGCATTGGGGCGGCGAA
ATGTGGATGCCGCGGGCAGAGTAA

Synonyms

Publications