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Properties
| Property Name | Value |
|---|
| TranscriptId | 611296 |
| Track | FilteredModels2 |
| ProteinId | 611210 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_55 | supercontig | scaffold_55:533..2232 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10365 ID=mRNA_10365|Name=jgi.p|Nanoce1779_2|611210|organism=Nannochloropsis oceanica|type=mRNA|length=1700bp
TTTACTCGTTTATTTGGCAAACTTTCGTTACCAAATTTTGGGCTCGTCTT
TTCTTTACGTTCTGCTGCTCTTTGTGTATATTGTTTGTACACTAATTGTA
TATCTTGTTTTTCATTTACTCTTGACCTTGTTGTCTGCACATTTCTGCTG
GATCGGTGACATTCTCAGACTGTCTAGCAGCTCAACCTCCTCCCCAAAAC
CTTTCTACCAACTTGTAATGCGTCGTGACACAAGTATGCATATCCTCCCC
TTTACTTAAGGTGACCTTTGCACTCACTCCCATGACTTAGTCCGATCTTT
CCCGCCCTGCATACCAGCGCATGGCACATGTCTTCTGCGCTACCTCCCGT
CTCATCTACCCCTCTCGTGCGCCACCCGGAGCCTTTACCCTTCACTTCAC
CCTCGTCCTTTTTTACGATACTTCTGTGACATCGATATTGATCATGCTAA
AGCCTTGTAATATGTTCGAGTTTTTTCTCACTGATAGGTCCTACTACCTC
TACATTCCGCCTCCCCACAAACTACACAGCCAACAACAAAAGCGACTACT
ATCAAACAAAGCCTACATGCGTTTCAACAATATCATCCTCGTCCTCCCCT
TTGTCCTTGCAGCGGGCAACCCCTTCTTCGCCAGCGGCCAAGAGACCACC
TCGAGCCTGCGTGGGACGAACAACAAGGACATTGCGAGTACCACCAATGA
CGATGACAAGCAAATTGATAAATTGGGCACCGCCGAGACGATCCCTGTCG
TCCCCGTCGAAGAGCCTGTCCCACCCATGGAGCCAATGAAGGCAGAGAGA
GAAATGGAAGGCGGGCAAAAGGAAAATACTATGGTTGAGGGCCACGAGGG
AGGAAGAGAGAAAGGGGGGATGGGGCACAACTCGAAGGGCCGAGGTTGTC
GACAACAAGGGGATGGACGACGACATGATCACCGAAGGCGACAATGGCCT
CCAATTTGAGAGCGCAGGTCCCTCGGAGGGAGATAAGGGATACTACAAAG
GTGGGTGGGGGCGTGGGGTTGGGGATGGAGGAAAAAAGGCGGGTGGAACA
GGAACTACAACAATAACTGGAATAACCAGAGGGGGTGGGGCCGCGGAGTG
CTGGTAGAGACTAGGAGGCTGCTTGAATGTGATTCATCACGATGTTGGAA
GGGTGGGAGGAAGAGAGAGACGCCAATGAGGCTACAACCGGCGCCATTTT
TTTTACTGTCCTCTCCATTGCTGTCTGAGGCCTCTACACAGAAATACAAA
CAGAAAATGAGTGGAACCCCTCCAAAAAAAAGAGGCAGCATGCCCAACAC
TTAGGCCAGGGTAAAGAAAATGAAAGGGAAATAAAAAGAAAGGAAAGGAA
AAGAGGGAGGGGGAGGATTAAGGGAAAGAAGATAAAGAAGAGGGGTGCTA
GGATGATGATGAAAGTGATAAGGGGAAGATATTGACACGTCAGAGGAATA
AAGAGAAAAACAGGGAGTCGACACCACTGGGGGTGGGACGACAAGAGAGA
AAGTGCGGAAGAAGAATAGGGAGGCTGTGTGTGATATGAAGGGATATTAA
TATTACATAATAAAATAATTGGAAGCGTGGGTATGGATGTCGTTCTGCGA
TGAGAGGCGCTGGCCTCTCATAGCAAGCACGCCCCTCAACGCCATATTTA
AGATTCAAAATTTATACTAAATGAACAAGTCATCATCCTTTCCGGCTGGG back to topprotein sequence of jgi.p|Nanoce1779_2|611210 >mRNA_10365-protein ID=mRNA_10365-protein|Name=jgi.p|Nanoce1779_2|611210|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MAHVFCATSRLIYPSRAPPGAFTLHFTLVLFYDTSVTSILIMLKPCNMFE
FFLTDRSYYLYIPPPHKLHSQQQKRLLSNKAYMRFNNIILVLPFVLAAGN
PFFASGQETTSSLRGTNNKDIASTTNDDDKQIDKLGTAETIPVVPVEEPV
PPMEPMKAEREMEGGQKENTMVEGHEGGREKGGMGHNSKGRGCRQQGDGR
RHDHRRRQWPPI* back to topmRNA from alignment at scaffold_55:533..2232- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10365 ID=mRNA_10365|Name=jgi.p|Nanoce1779_2|611210|organism=Nannochloropsis oceanica|type=mRNA|length=1700bp|location=Sequence derived from alignment at scaffold_55:533..2232- (Nannochloropsis oceanica)
TTTACTCGTTTATTTGGCAAACTTTCGTTACCAAATTTTGGGCTCGTCTT
TTCTTTACGTTCTGCTGCTCTTTGTGTATATTGTTTGTACACTAATTGTA
TATCTTGTTTTTCATTTACTCTTGACCTTGTTGTCTGCACATTTCTGCTG
GATCGGTGACATTCTCAGACTGTCTAGCAGCTCAACCTCCTCCCCAAAAC
CTTTCTACCAACTTGTAATGCGTCGTGACACAAGTATGCATATCCTCCCC
TTTACTTAAGGTGACCTTTGCACTCACTCCCATGACTTAGTCCGATCTTT
CCCGCCCTGCATACCAGCGCATGGCACATGTCTTCTGCGCTACCTCCCGT
CTCATCTACCCCTCTCGTGCGCCACCCGGAGCCTTTACCCTTCACTTCAC
CCTCGTCCTTTTTTACGATACTTCTGTGACATCGATATTGATCATGCTAA
AGCCTTGTAATATGTTCGAGTTTTTTCTCACTGATAGGTCCTACTACCTC
TACATTCCGCCTCCCCACAAACTACACAGCCAACAACAAAAGCGACTACT
ATCAAACAAAGCCTACATGCGTTTCAACAATATCATCCTCGTCCTCCCCT
TTGTCCTTGCAGCGGGCAACCCCTTCTTCGCCAGCGGCCAAGAGACCACC
TCGAGCCTGCGTGGGACGAACAACAAGGACATTGCGAGTACCACCAATGA
CGATGACAAGCAAATTGATAAATTGGGCACCGCCGAGACGATCCCTGTCG
TCCCCGTCGAAGAGCCTGTCCCACCCATGGAGCCAATGAAGGCAGAGAGA
GAAATGGAAGGCGGGCAAAAGGAAAATACTATGGTTGAGGGCCACGAGGG
AGGAAGAGAGAAAGGGGGGATGGGGCACAACTCGAAGGGCCGAGGTTGTC
GACAACAAGGGGATGGACGACGACATGATCACCGAAGGCGACAATGGCCT
CCAATTTGAGAGCGCAGGTCCCTCGGAGGGAGATAAGGGATACTACAAAG
GTGGGTGGGGGCGTGGGGTTGGGGATGGAGGAAAAAAGGCGGGTGGAACA
GGAACTACAACAATAACTGGAATAACCAGAGGGGGTGGGGCCGCGGAGTG
CTGGTAGAGACTAGGAGGCTGCTTGAATGTGATTCATCACGATGTTGGAA
GGGTGGGAGGAAGAGAGAGACGCCAATGAGGCTACAACCGGCGCCATTTT
TTTTACTGTCCTCTCCATTGCTGTCTGAGGCCTCTACACAGAAATACAAA
CAGAAAATGAGTGGAACCCCTCCAAAAAAAAGAGGCAGCATGCCCAACAC
TTAGGCCAGGGTAAAGAAAATGAAAGGGAAATAAAAAGAAAGGAAAGGAA
AAGAGGGAGGGGGAGGATTAAGGGAAAGAAGATAAAGAAGAGGGGTGCTA
GGATGATGATGAAAGTGATAAGGGGAAGATATTGACACGTCAGAGGAATA
AAGAGAAAAACAGGGAGTCGACACCACTGGGGGTGGGACGACAAGAGAGA
AAGTGCGGAAGAAGAATAGGGAGGCTGTGTGTGATATGAAGGGATATTAA
TATTACATAATAAAATAATTGGAAGCGTGGGTATGGATGTCGTTCTGCGA
TGAGAGGCGCTGGCCTCTCATAGCAAGCACGCCCCTCAACGCCATATTTA
AGATTCAAAATTTATACTAAATGAACAAGTCATCATCCTTTCCGGCTGGG
back to topCoding sequence (CDS) from alignment at scaffold_55:533..2232- >mRNA_10365 ID=mRNA_10365|Name=jgi.p|Nanoce1779_2|611210|organism=Nannochloropsis oceanica|type=CDS|length=639bp|location=Sequence derived from alignment at scaffold_55:533..2232- (Nannochloropsis oceanica)
ATGGCACATGTCTTCTGCGCTACCTCCCGTCTCATCTACCCCTCTCGTGC
GCCACCCGGAGCCTTTACCCTTCACTTCACCCTCGTCCTTTTTTACGATA
CTTCTGTGACATCGATATTGATCATGCTAAAGCCTTGTAATATGTTCGAG
TTTTTTCTCACTGATAGGTCCTACTACCTCTACATTCCGCCTCCCCACAA
ACTACACAGCCAACAACAAAAGCGACTACTATCAAACAAAGCCTACATGC
GTTTCAACAATATCATCCTCGTCCTCCCCTTTGTCCTTGCAGCGGGCAAC
CCCTTCTTCGCCAGCGGCCAAGAGACCACCTCGAGCCTGCGTGGGACGAA
CAACAAGGACATTGCGAGTACCACCAATGACGATGACAAGCAAATTGATA
AATTGGGCACCGCCGAGACGATCCCTGTCGTCCCCGTCGAAGAGCCTGTC
CCACCCATGGAGCCAATGAAGGCAGAGAGAGAAATGGAAGGCGGGCAAAA
GGAAAATACTATGGTTGAGGGCCACGAGGGAGGAAGAGAGAAAGGGGGGA
TGGGGCACAACTCGAAGGGCCGAGGTTGTCGACAACAAGGGGATGGACGA
CGACATGATCACCGAAGGCGACAATGGCCTCCAATTTGA back to top
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