jgi.p|Nanoce1779_2|611207, mRNA_10363 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611207
Unique NamemRNA_10363
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length807
Alignment locationscaffold_54:103744..105016 -

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Properties
Property NameValue
TranscriptId611293
TrackFilteredModels2
ProteinId611207
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_54supercontigscaffold_54:103744..105016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611207gene_10363Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611207mRNA_10363-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10363CDS_10363Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10363 ID=mRNA_10363|Name=jgi.p|Nanoce1779_2|611207|organism=Nannochloropsis oceanica|type=mRNA|length=807bp
TGAGGGTAAGGCATCGTCTTCGCGGAATACGGAAAAGCGAAGTTTGATGC
AAGCAACCACCCTCCCTGCCCATCGGGGGGCTAAGCCAGGGTCAACAAGG
AGGAGGGTTTATGGCTGATACGTGGGTGCTGGTAAAGGAGGTGGAGGAGG
ATGACAAAAGGGAGAAGAGCACACGCCTGAAAAACGAAGGAGCTCAAGCA
CACAACGCCCTTGCTTGACGCAGATGAGACTGAGGCAACCCAAAATTGCC
TTTTGACATACGAACCGCAGTCTCTCCCGACCCTTGCCCACGCTTCTCAA
TCGCTATCATGCCGCGCCCTACACTCTTGAATACAGTCCTGGGCATTTGG
CCGCCATCTCATCACCCGCATGGCCCTCTTCTCCTAAGTCTCCCCCCGTC
CCTGCTGTAGTATTGCCCCAATGCCGCACGCCATCGACCATCCGCGCAAA
CATCACCACAACGAGGACGGCGACGACGACGACAACGATAAGGATGAGAC
AGAATTACTCCTCCTCCCACTCCGATGCTGCGCATGCCGCTCATCGGCGG
CCCCGCGTTCCGCCGCCCTGCTGATGCTGGCTATCTACGGGGCTATCCTC
GTCGTGTGGCTGCCACTGTATTTTCTCTCCCTCCTCCTCACCACCCCTGG
CGTCTATCTGGGTGTGGGTGGAGGCATTTATGCACTAGGGCGCTATGTTG
GTGAGGGAGGGAGGAAGGGAAGGAGACAAAGAGAGAGAGTCGTGCTAGAA
TGTGCATGGGCGAATCAAGAATGATCTTTTAAATGACTCCCATCCCCTCC
TCCTCCC
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protein sequence of jgi.p|Nanoce1779_2|611207

>mRNA_10363-protein ID=mRNA_10363-protein|Name=jgi.p|Nanoce1779_2|611207|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MPHAIDHPRKHHHNEDGDDDDNDKDETELLLLPLRCCACRSSAAPRSAAL
LMLAIYGAILVVWLPLYFLSLLLTTPGVYLGVGGGIYALGRYVGEGGRKG
RRQRERVVLECAWANQE*
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mRNA from alignment at scaffold_54:103744..105016-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10363 ID=mRNA_10363|Name=jgi.p|Nanoce1779_2|611207|organism=Nannochloropsis oceanica|type=mRNA|length=1273bp|location=Sequence derived from alignment at scaffold_54:103744..105016- (Nannochloropsis oceanica)
TGAGGGTAAGGCATCGTCTTCGCGGAATACGGAAAAGCGAAGTTTGATGC
AAGCAACCACCCTCCCTGCCCATCGGGGGGCTAAGCCAGGGTCAACAAGG
AGGAGGGTTTATGGCTGATACGTGGGTGCTGGTAAAGGAGGTGGAGGAGG
ATGACAAAAGGGAGAAGAGCACACGCCTGAAAAACGAAGGAGCTCAAGCA
CACAACGCCCTTGCTTGACGCAGATGAGACTGAGGCAACCCAAAATTGCC
TTTTGACATACGAACCGCAGTCTCTCCCGACCCTTGCCCACGCTTCTCAA
TCGCTATCATGCCGCGCCCTACACTCTTGAATACAGTCCTGGGCATTTGG
CCGCCATCTCATCACCCGCATGGCCCTCTTCTCCTAAGTCTCCCCCCGTC
CCTGCTGTAGTATTGCCCCAATGCCGCACGCCATCGACCATCCGCGCAAA
CATCACCACAACGAGGACGGCGACGACGACGACAACGATAAGGATGAGAC
AGAATTACTCCTCCTCCCACTCCGATGCTGCGCATGCCGCTCATCGGCGG
CGTGGGGCCTCTGGCCCTCCACCTGCTCTGCCTCCCTTCCCTCCCTCCCA
CACGAACCCGCCTCTCGTCCACGCCCTCCTTTGCTTACAATCGCCAAGGC
TCAGCCTGGCGACGCCTCGGGCGATGTTGTCTTAAAATATGGCCTTGAAA
CTGGCTCTCTTGCCTGCCCTTGCCGATAGGTGGACCAGCCATGTCACCCC
TCTTCGGCGTCCTCCTCTCCAGCCCGCGTGTAAGGAGGACTAGATGGAGG
GGAGGGTGGGAGGGAGGGAGCGATGGACGCACCAAAGCGAGGAAGGGGCG
AGTGGAGCAAAATGAGGGCCCAATAGTGTCCACAAAGTAATGCTCTGAAG
AAGGTGGTGTGCGCGCCTCTTCTACTCACCCACTCCCTCCCTCCCTCCCT
CCCTCCCTCCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTTCCTCCCTT
CCTCCCTCCCTCCATCCTCCCCAGTCCGCCGCCCTGCTGATGCTGGCTAT
CTACGGGGCTATCCTCGTCGTGTGGCTGCCACTGTATTTTCTCTCCCTCC
TCCTCACCACCCCTGGCGTCTATCTGGGTGTGGGTGGAGGCATTTATGCA
CTAGGGCGCTATGTTGGTGAGGGAGGGAGGAAGGGAAGGAGACAAAGAGA
GAGAGTCGTGCTAGAATGTGCATGGGCGAATCAAGAATGATCTTTTAAAT
GACTCCCATCCCCTCCTCCTCCC
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Coding sequence (CDS) from alignment at scaffold_54:103744..105016-

>mRNA_10363 ID=mRNA_10363|Name=jgi.p|Nanoce1779_2|611207|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at scaffold_54:103744..105016- (Nannochloropsis oceanica)
TCCGCCGCCCTGCTGATGCTGGCTATCTACGGGGCTATCCTCGTCGTGTG
GCTGCCACTGTATTTTCTCTCCCTCCTCCTCACCACCCCTGGCGTCTATC
TGGGTGTGGGTGGAGGCATTTATGCACTAGGGCGCTATGTTGGTGAGGGA
GGGAGGAAGGGAAGGAGACAAAGAGAGAGAGTCGTGCTAGAATGTGCATG
GGCGAATCAAGAATGACCCGCGTATGCCGCACGCCATCGACCATCCGCGC
AAACATCACCACAACGAGGACGGCGACGACGACGACAACGATAAGGATGA
GACAGAATTACTCCTCCTCCCACTCCGATGCTGCGCATGCCGCTCATCGG
CGGCTCCGCCGCCCTGCTGATGCTGGCTATCTACGGGGCTATCCTCGTCG
TGTGGCTGCCACTGTATTTTCTCTCCCTCCTCCTCACCACCCCTGGCGTC
TATCTGGGTGTGGGTGGAGGCATTTATGCACTAGGGCGCTATGTTGGTGA
GGGAGGGAGGAAGGGAAGGAGACAAAGAGAGAGAGTCGTGCTAGAATGTG
CATGGGCGAATCAAGAATGACCCGCGTATGCCGCACGCCATCGACCATCC
GCGCAAACATCACCACAACGAGGACGGCGACGACGACGACAACGATAAGG
ATGAGACAGAATTACTCCTCCTCCCACTCCGATGCTGCGCATGCCGCTCA
TCGGCGGCTCCGCCGCCCTGCTGATGCTGGCTATCTACGGGGCTATCCTC
GTCGTGTGGCTGCCACTGTATTTTCTCTCCCTCCTCCTCACCACCCCTGG
CGTCTATCTGGGTGTGGGTGGAGGCATTTATGCACTAGGGCGCTATGTTG
GTGAGGGAGGGAGGAAGGGAAGGAGACAAAGAGAGAGAGTCGTGCTAGAA
TGTGCATGGGCGAATCAAGAATGACCCGCGTATGCCGCACGCCATCGACC
ATCCGCGCAAACATCACCACAACGAGGACGGCGACGACGACGACAACGAT
AAGGATGAGACAGAATTACTCCTCCTCCCACTCCGATGCTGCGCATGCCG
CTCATCGGCGGC
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Synonyms
Publications