jgi.p|Nanoce1779_2|533980, mRNA_10362 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|533980
Unique NamemRNA_10362
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1050
Alignment locationscaffold_54:95841..97191 -

Link to JBrowse

Properties
Property NameValue
TranscriptId534066
TrackFilteredModels2
ProteinId533980
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_54supercontigscaffold_54:95841..97191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533980gene_10362Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533980mRNA_10362-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10362CDS_10362Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10362 ID=mRNA_10362|Name=jgi.p|Nanoce1779_2|533980|organism=Nannochloropsis oceanica|type=mRNA|length=1050bp
ATGTCCAACATCTACCACTTGGAGCCCCCGACCAAGGGGAAGGTCGTCTT
GAAGACGTCCTTCGGGCCTGTCGACATTGAGCTGTGGCCACGCGAAGCAC
CATTGGCATGCAGAAATTTCGTCCAGCTCGCATTGGAAGGGTACTACGAC
CACACTATCTTCCATCGCGTCGTGCCTGGTCTGTGCGTGCAAGGCGGGGA
CCCGACGGGGACAGGCGGAGGAGGGGGAGAGCATTTATGCGGCTTTCGGT
CTGAGATCCACACAAGACTTAAATTTAACCACCGAGGCATCCTGGCCATG
GCGAACGACGTGGCGGAAGGCGGGAGGGAGGCGAAGGAGAGTAATCGCAG
CCAGTTCTTTGTAACGCTCGACGCGTGCGAGCACTTGAATGGGAAGCACA
CGATCTTCGGAAAAGTGACCGGGGAGACCATTTACAACGTACTGAGGATG
GGAGAGGTGGGCACGGACAGAGAGGATCGGCCTGTGACGCCGGTAAAGCT
GGAGGCGGTGGAGGTGTTGATGAATCCGTTTGATGACATTGTGCCGAGGG
ATAGGGGGGGGGAATTGAGGAAGAGGAGGGAGGAAGGGAGGGAGGGCCCG
GGCGGGGGGGAGGAGGAGGAGGAGAGGAGGAGGGTGGAGAAGAAGAGGCA
GGAAAGGTTGGGAAGGGCGGCGAAGAAAGACTTGAATTTATTGTCGTTTG
GCGATGATGAGGGAGAGGATGAGAATGAGGAGGAGGAGGAGGGAGCGAGG
GAGCGAGGGAGGAAGAGGAAGGGGGGATTGAGAAGTGTTCATGATGTGGT
TGAGAATAATGCTCTTTTAAAGAATGAAGCGGCTGATGATGTTTTAGGGC
TGGGAGAAAGGAAGGAGGAGGAAGAAGAGGAGGAGGAGGAAGAGAAAAAG
AGGAGGAAAACTGCTCGTGGAGATGGAAGGGAGAGAGGGAAGGAGGGAGG
GAAGGAAGGAGGAAAGGAGGGGAGCAGCAAAAGCATCACCAGAGGGAGTT
CAACGAAGGAGGAGGAGGAGGAGGAGGAGGAGGGGCGGGGTGGGCGGTGA
back to top

protein sequence of jgi.p|Nanoce1779_2|533980

>mRNA_10362-protein ID=mRNA_10362-protein|Name=jgi.p|Nanoce1779_2|533980|organism=Nannochloropsis oceanica|type=polypeptide|length=350bp
MSNIYHLEPPTKGKVVLKTSFGPVDIELWPREAPLACRNFVQLALEGYYD
HTIFHRVVPGLCVQGGDPTGTGGGGGEHLCGFRSEIHTRLKFNHRGILAM
ANDVAEGGREAKESNRSQFFVTLDACEHLNGKHTIFGKVTGETIYNVLRM
GEVGTDREDRPVTPVKLEAVEVLMNPFDDIVPRDRGGELRKRREEGREGP
GGGEEEEERRRVEKKRQERLGRAAKKDLNLLSFGDDEGEDENEEEEEGAR
ERGRKRKGGLRSVHDVVENNALLKNEAADDVLGLGERKEEEEEEEEEEKK
RRKTARGDGRERGKEGGKEGGKEGSSKSITRGSSTKEEEEEEEEGRGGR*
back to top

mRNA from alignment at scaffold_54:95841..97191-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10362 ID=mRNA_10362|Name=jgi.p|Nanoce1779_2|533980|organism=Nannochloropsis oceanica|type=mRNA|length=1351bp|location=Sequence derived from alignment at scaffold_54:95841..97191- (Nannochloropsis oceanica)
ATGTCCAACATCTACCACTTGGAGCCCCCGACCAAGGGGAAGGTCGTCTT
GAAGACGTCCTTCGGGCCTGTCGACATTGAGCTGTGGCCACGCGAAGCAC
CATTGGCATGCAGGTGGGTAGAAATTGATTCCAAGAAAGCGAGAGGAAAA
AGGGGCGATGGGATGGTGCGGTGAGGCCGCCTCTGTTGCCTCCATCTCTC
CTTCCCTCCCTCCCTCCACAGTGAATCATTGCTGTGTTTCGTGCTCATTT
TGCATCTCACATCGCTTAACCACCCACCTAGTCCCACTTCTGGCCAATGC
ATCGTCTATCATTCTCTGAGACAATCCCACCCTCCCTCCCTCCCACACTC
CCTTCTCCCTCCCAGAAATTTCGTCCAGCTCGCATTGGAAGGGTACTACG
ACCACACTATCTTCCATCGCGTCGTGCCTGGTCTGTGCGTGCAAGGCGGG
GACCCGACGGGGACAGGCGGAGGAGGGGGAGAGCATTTATGTCTGCGCCG
AACCAGGGGAGAGCGGGCATATAGGCAAGGGGAGGGGAGGCGGCTTTCGG
TCTGAGATCCACACAAGACTTAAATTTAACCACCGAGGCATCCTGGCCAT
GGCGAACGACGTGGCGGAAGGCGGGAGGGAGGCGAAGGAGAGTAATCGCA
GCCAGTTCTTTGTAACGCTCGACGCGTGCGAGCACTTGAATGGGAAGCAC
ACGATCTTCGGAAAAGTGACCGGGGAGACCATTTACAACGTACTGAGGAT
GGGAGAGGTGGGCACGGACAGAGAGGATCGGCCTGTGACGCCGGTAAAGC
TGGAGGCGGTGGAGGTGTTGATGAATCCGTTTGATGACATTGTGCCGAGG
GATAGGGGGGGGGAATTGAGGAAGAGGAGGGAGGAAGGGAGGGAGGGCCC
GGGCGGGGGGGAGGAGGAGGAGGAGAGGAGGAGGGTGGAGAAGAAGAGGC
AGGAAAGGTTGGGAAGGGCGGCGAAGAAAGACTTGAATTTATTGTCGTTT
GGCGATGATGAGGGAGAGGATGAGAATGAGGAGGAGGAGGAGGGAGCGAG
GGAGCGAGGGAGGAAGAGGAAGGGGGGATTGAGAAGTGTTCATGATGTGG
TTGAGAATAATGCTCTTTTAAAGAATGAAGCGGCTGATGATGTTTTAGGG
CTGGGAGAAAGGAAGGAGGAGGAAGAAGAGGAGGAGGAGGAAGAGAAAAA
GAGGAGGAAAACTGCTCGTGGAGATGGAAGGGAGAGAGGGAAGGAGGGAG
GGAAGGAAGGAGGAAAGGAGGGGAGCAGCAAAAGCATCACCAGAGGGAGT
TCAACGAAGGAGGAGGAGGAGGAGGAGGAGGAGGGGCGGGGTGGGCGGTG
A
back to top

Coding sequence (CDS) from alignment at scaffold_54:95841..97191-

>mRNA_10362 ID=mRNA_10362|Name=jgi.p|Nanoce1779_2|533980|organism=Nannochloropsis oceanica|type=CDS|length=3150bp|location=Sequence derived from alignment at scaffold_54:95841..97191- (Nannochloropsis oceanica)
GCGGCTTTCGGTCTGAGATCCACACAAGACTTAAATTTAACCACCGAGGC
ATCCTGGCCATGGCGAACGACGTGGCGGAAGGCGGGAGGGAGGCGAAGGA
GAGTAATCGCAGCCAGTTCTTTGTAACGCTCGACGCGTGCGAGCACTTGA
ATGGGAAGCACACGATCTTCGGAAAAGTGACCGGGGAGACCATTTACAAC
GTACTGAGGATGGGAGAGGTGGGCACGGACAGAGAGGATCGGCCTGTGAC
GCCGGTAAAGCTGGAGGCGGTGGAGGTGTTGATGAATCCGTTTGATGACA
TTGTGCCGAGGGATAGGGGGGGGGAATTGAGGAAGAGGAGGGAGGAAGGG
AGGGAGGGCCCGGGCGGGGGGGAGGAGGAGGAGGAGAGGAGGAGGGTGGA
GAAGAAGAGGCAGGAAAGGTTGGGAAGGGCGGCGAAGAAAGACTTGAATT
TATTGTCGTTTGGCGATGATGAGGGAGAGGATGAGAATGAGGAGGAGGAG
GAGGGAGCGAGGGAGCGAGGGAGGAAGAGGAAGGGGGGATTGAGAAGTGT
TCATGATGTGGTTGAGAATAATGCTCTTTTAAAGAATGAAGCGGCTGATG
ATGTTTTAGGGCTGGGAGAAAGGAAGGAGGAGGAAGAAGAGGAGGAGGAG
GAAGAGAAAAAGAGGAGGAAAACTGCTCGTGGAGATGGAAGGGAGAGAGG
GAAGGAGGGAGGGAAGGAAGGAGGAAAGGAGGGGAGCAGCAAAAGCATCA
CCAGAGGGAGTTCAACGAAGGAGGAGGAGGAGGAGGAGGAGGAGGGGCGG
GGTGGGCGGTGAAAATTTCGTCCAGCTCGCATTGGAAGGGTACTACGACC
ACACTATCTTCCATCGCGTCGTGCCTGGTCTGTGCGTGCAAGGCGGGGAC
CCGACGGGGACAGGCGGAGGAGGGGGAGAGCATTTATATGTCCAACATCT
ACCACTTGGAGCCCCCGACCAAGGGGAAGGTCGTCTTGAAGACGTCCTTC
GGGCCTGTCGACATTGAGCTGTGGCCACGCGAAGCACCATTGGCATGCAG
GCGGCTTTCGGTCTGAGATCCACACAAGACTTAAATTTAACCACCGAGGC
ATCCTGGCCATGGCGAACGACGTGGCGGAAGGCGGGAGGGAGGCGAAGGA
GAGTAATCGCAGCCAGTTCTTTGTAACGCTCGACGCGTGCGAGCACTTGA
ATGGGAAGCACACGATCTTCGGAAAAGTGACCGGGGAGACCATTTACAAC
GTACTGAGGATGGGAGAGGTGGGCACGGACAGAGAGGATCGGCCTGTGAC
GCCGGTAAAGCTGGAGGCGGTGGAGGTGTTGATGAATCCGTTTGATGACA
TTGTGCCGAGGGATAGGGGGGGGGAATTGAGGAAGAGGAGGGAGGAAGGG
AGGGAGGGCCCGGGCGGGGGGGAGGAGGAGGAGGAGAGGAGGAGGGTGGA
GAAGAAGAGGCAGGAAAGGTTGGGAAGGGCGGCGAAGAAAGACTTGAATT
TATTGTCGTTTGGCGATGATGAGGGAGAGGATGAGAATGAGGAGGAGGAG
GAGGGAGCGAGGGAGCGAGGGAGGAAGAGGAAGGGGGGATTGAGAAGTGT
TCATGATGTGGTTGAGAATAATGCTCTTTTAAAGAATGAAGCGGCTGATG
ATGTTTTAGGGCTGGGAGAAAGGAAGGAGGAGGAAGAAGAGGAGGAGGAG
GAAGAGAAAAAGAGGAGGAAAACTGCTCGTGGAGATGGAAGGGAGAGAGG
GAAGGAGGGAGGGAAGGAAGGAGGAAAGGAGGGGAGCAGCAAAAGCATCA
CCAGAGGGAGTTCAACGAAGGAGGAGGAGGAGGAGGAGGAGGAGGGGCGG
GGTGGGCGGTGAAAATTTCGTCCAGCTCGCATTGGAAGGGTACTACGACC
ACACTATCTTCCATCGCGTCGTGCCTGGTCTGTGCGTGCAAGGCGGGGAC
CCGACGGGGACAGGCGGAGGAGGGGGAGAGCATTTATATGTCCAACATCT
ACCACTTGGAGCCCCCGACCAAGGGGAAGGTCGTCTTGAAGACGTCCTTC
GGGCCTGTCGACATTGAGCTGTGGCCACGCGAAGCACCATTGGCATGCAG
GCGGCTTTCGGTCTGAGATCCACACAAGACTTAAATTTAACCACCGAGGC
ATCCTGGCCATGGCGAACGACGTGGCGGAAGGCGGGAGGGAGGCGAAGGA
GAGTAATCGCAGCCAGTTCTTTGTAACGCTCGACGCGTGCGAGCACTTGA
ATGGGAAGCACACGATCTTCGGAAAAGTGACCGGGGAGACCATTTACAAC
GTACTGAGGATGGGAGAGGTGGGCACGGACAGAGAGGATCGGCCTGTGAC
GCCGGTAAAGCTGGAGGCGGTGGAGGTGTTGATGAATCCGTTTGATGACA
TTGTGCCGAGGGATAGGGGGGGGGAATTGAGGAAGAGGAGGGAGGAAGGG
AGGGAGGGCCCGGGCGGGGGGGAGGAGGAGGAGGAGAGGAGGAGGGTGGA
GAAGAAGAGGCAGGAAAGGTTGGGAAGGGCGGCGAAGAAAGACTTGAATT
TATTGTCGTTTGGCGATGATGAGGGAGAGGATGAGAATGAGGAGGAGGAG
GAGGGAGCGAGGGAGCGAGGGAGGAAGAGGAAGGGGGGATTGAGAAGTGT
TCATGATGTGGTTGAGAATAATGCTCTTTTAAAGAATGAAGCGGCTGATG
ATGTTTTAGGGCTGGGAGAAAGGAAGGAGGAGGAAGAAGAGGAGGAGGAG
GAAGAGAAAAAGAGGAGGAAAACTGCTCGTGGAGATGGAAGGGAGAGAGG
GAAGGAGGGAGGGAAGGAAGGAGGAAAGGAGGGGAGCAGCAAAAGCATCA
CCAGAGGGAGTTCAACGAAGGAGGAGGAGGAGGAGGAGGAGGAGGGGCGG
GGTGGGCGGTGAAAATTTCGTCCAGCTCGCATTGGAAGGGTACTACGACC
ACACTATCTTCCATCGCGTCGTGCCTGGTCTGTGCGTGCAAGGCGGGGAC
CCGACGGGGACAGGCGGAGGAGGGGGAGAGCATTTATATGTCCAACATCT
ACCACTTGGAGCCCCCGACCAAGGGGAAGGTCGTCTTGAAGACGTCCTTC
GGGCCTGTCGACATTGAGCTGTGGCCACGCGAAGCACCATTGGCATGCAG
back to top
Synonyms
Publications