jgi.p|Nanoce1779_2|611195, mRNA_10361 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611195
Unique NamemRNA_10361
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length562
Alignment locationscaffold_54:92888..93924 +

Link to JBrowse

Properties
Property NameValue
TranscriptId611281
TrackFilteredModels2
ProteinId611195
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_54supercontigscaffold_54:92888..93924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611195gene_10361Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611195mRNA_10361-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10361CDS_10361Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10361 ID=mRNA_10361|Name=jgi.p|Nanoce1779_2|611195|organism=Nannochloropsis oceanica|type=mRNA|length=562bp
ACAGTCCACACTTTGGCACAGCTACGACACAAAAATGAAGACATCATTCG
CCTTGGCCGTGGCTGCTGCTTCGTTGACCCTAGCCTCGGCCTTCCTCCCC
CCTGCCCCCCTCCCCACCCGTCGCGCTGCTACTGCCCTTGCCGCGTGGAC
CCCTGACCGTGCCCCGCAAACTAACCCGGGCCGTTCCGGCCTCTCAGCCG
ACGCTTCCTTCGATCGCGCGGTCATTCGAGCAGAGACAGACTACATGGAT
AACGACCAACAGAATCCCCCTTCGGAGACCAAGTGGTGGGAAGCTTACTA
CCCTTCTCAAGAAGAGCAAGAAGCGGCTGCGGCCGGGTTCGACTTTTCGA
ACCCGGAGAAATGGTTGGAGGCGCCCAAGGAGGGAGTGAAGATGGATCCT
CCTAGTTTCGAGGCCAGCGAGGGATTCACCTATGCCAGCCGGGAATGGCC
AGAATTGAAGAAGGTGGTGAAGGCTTGAGGAGGAGGAATGGACGGAGGGA
GGGAGGGAGGGAGGGACGGAGGGAGGGATGAAGAAAGTTGGCATTGGATT
GCGATTGAGGGG
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protein sequence of jgi.p|Nanoce1779_2|611195

>mRNA_10361-protein ID=mRNA_10361-protein|Name=jgi.p|Nanoce1779_2|611195|organism=Nannochloropsis oceanica|type=polypeptide|length=148bp
MKTSFALAVAAASLTLASAFLPPAPLPTRRAATALAAWTPDRAPQTNPGR
SGLSADASFDRAVIRAETDYMDNDQQNPPSETKWWEAYYPSQEEQEAAAA
GFDFSNPEKWLEAPKEGVKMDPPSFEASEGFTYASREWPELKKVVKA*
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mRNA from alignment at scaffold_54:92888..93924+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10361 ID=mRNA_10361|Name=jgi.p|Nanoce1779_2|611195|organism=Nannochloropsis oceanica|type=mRNA|length=1037bp|location=Sequence derived from alignment at scaffold_54:92888..93924+ (Nannochloropsis oceanica)
ACAGTCCACACTTTGGCACAGCTACGACACAAAAATGAAGACATCATTCG
CCTTGGCCGTGGCTGCTGCTTCGTTGACCCTAGGTAAGTCTAGGGAGGCC
TGGACAGGGAGGGGAAGACAGTGGGAGGAGGGGGAGGGGGCGTGCAGGAC
CATATGCCATGTTCCGGTCCACCGAGATTGCGCATGCGAGGCTCCGTGGA
CTACAATTTGCATAATTAACCTCAAAGGACGCCAATCATTGCAGCTGTAC
TCTCGGAGAGCCCAGCCTTCGCTGTCCAACCACAGGGCAACAGTGTGTAC
GACGCCCTGTAGCAAAGAGCACTACCGCATCCGCCTTACCACATCCTCAC
AACACCACTGCCTGTGACTCCCTACACTCCGTCCTCATCACTCATGCACT
CCCTCCCTTCCGTCCAAACACGACAGCCTCGGCCTTCCTCCCCCCTGCCC
CCCTCCCCACCCGTCGCGCTGCTACTGCCCTTGCCGCGTGGACCCCTGAC
CGTGCCCCGCAAACTAACCCGGGCCGTTCCGGCCTCTCAGCCGACGCTTC
CTTCGATCGCGCGGTCATTCGAGCAGAGACAGACTACATGGATAACGACC
AACAGGTACGCTCTCCCTTCCCATCCTCCTTCCCTCCCTCCTACCCCCTA
TGTCCACCCACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCAGAATCCCCCTTCGG
AGACCAAGTGGTGGGAAGCTTACTACCCTTCTCAAGAAGAGCAAGAAGCG
GCTGCGGCCGGGTTCGACTTTTCGAACCCGGAGAAATGGTTGGAGGCGCC
CAAGGAGGGAGTGAAGATGGATCCTCCTAGTTTCGAGGCCAGCGAGGGAT
TCACCTATGCCAGCCGGGAATGGCCAGAATTGAAGAAGGTGGTGAAGGCT
TGAGGAGGAGGAATGGACGGAGGGAGGGAGGGAGGGAGGGACGGAGGGAG
GGATGAAGAAAGTTGGCATTGGATTGCGATTGAGGGG
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Coding sequence (CDS) from alignment at scaffold_54:92888..93924+

>mRNA_10361 ID=mRNA_10361|Name=jgi.p|Nanoce1779_2|611195|organism=Nannochloropsis oceanica|type=CDS|length=1332bp|location=Sequence derived from alignment at scaffold_54:92888..93924+ (Nannochloropsis oceanica)
ATGAAGACATCATTCGCCTTGGCCGTGGCTGCTGCTTCGTTGACCCTAGC
CTCGGCCTTCCTCCCCCCTGCCCCCCTCCCCACCCGTCGCGCTGCTACTG
CCCTTGCCGCGTGGACCCCTGACCGTGCCCCGCAAACTAACCCGGGCCGT
TCCGGCCTCTCAGCCGACGCTTCCTTCGATCGCGCGGTCATTCGAGCAGA
GACAGACTACATGGATAACGACCAACAGAATCCCCCTTCGGAGACCAAGT
GGTGGGAAGCTTACTACCCTTCTCAAGAAGAGCAAGAAGCGGCTGCGGCC
GGGTTCGACTTTTCGAACCCGGAGAAATGGTTGGAGGCGCCCAAGGAGGG
AGTGAAGATGGATCCTCCTAGTTTCGAGGCCAGCGAGGGATTCACCTATG
CCAGCCGGGAATGGCCAGAATTGAAGAAGGTGGTGAAGGCTTGAATGAAG
ACATCATTCGCCTTGGCCGTGGCTGCTGCTTCGTTGACCCTAGCCTCGGC
CTTCCTCCCCCCTGCCCCCCTCCCCACCCGTCGCGCTGCTACTGCCCTTG
CCGCGTGGACCCCTGACCGTGCCCCGCAAACTAACCCGGGCCGTTCCGGC
CTCTCAGCCGACGCTTCCTTCGATCGCGCGGTCATTCGAGCAGAGACAGA
CTACATGGATAACGACCAACAGAATCCCCCTTCGGAGACCAAGTGGTGGG
AAGCTTACTACCCTTCTCAAGAAGAGCAAGAAGCGGCTGCGGCCGGGTTC
GACTTTTCGAACCCGGAGAAATGGTTGGAGGCGCCCAAGGAGGGAGTGAA
GATGGATCCTCCTAGTTTCGAGGCCAGCGAGGGATTCACCTATGCCAGCC
GGGAATGGCCAGAATTGAAGAAGGTGGTGAAGGCTTGAATGAAGACATCA
TTCGCCTTGGCCGTGGCTGCTGCTTCGTTGACCCTAGCCTCGGCCTTCCT
CCCCCCTGCCCCCCTCCCCACCCGTCGCGCTGCTACTGCCCTTGCCGCGT
GGACCCCTGACCGTGCCCCGCAAACTAACCCGGGCCGTTCCGGCCTCTCA
GCCGACGCTTCCTTCGATCGCGCGGTCATTCGAGCAGAGACAGACTACAT
GGATAACGACCAACAGAATCCCCCTTCGGAGACCAAGTGGTGGGAAGCTT
ACTACCCTTCTCAAGAAGAGCAAGAAGCGGCTGCGGCCGGGTTCGACTTT
TCGAACCCGGAGAAATGGTTGGAGGCGCCCAAGGAGGGAGTGAAGATGGA
TCCTCCTAGTTTCGAGGCCAGCGAGGGATTCACCTATGCCAGCCGGGAAT
GGCCAGAATTGAAGAAGGTGGTGAAGGCTTGA
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Synonyms
Publications