jgi.p|Nanoce1779_2|611177, mRNA_10358 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611177
Unique NamemRNA_10358
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1504
Alignment locationscaffold_54:85843..87571 +

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Properties
Property NameValue
TranscriptId611263
TrackFilteredModels2
ProteinId611177
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_54supercontigscaffold_54:85843..87571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611177gene_10358Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611177mRNA_10358-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10358CDS_10358Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10358 ID=mRNA_10358|Name=jgi.p|Nanoce1779_2|611177|organism=Nannochloropsis oceanica|type=mRNA|length=1504bp
ACGTGTTTGTTGTCAACAAGACGATTATCAAGGCCTGTGTCTGTGTATAA
TACAGCTGGAAGCAAGACGGCACGTAAGGTCAACAAGCGATATCGCCGCC
GTCGCAGTAGTTTGTGTGGTCTGAGGAGCCGACTACTTTGTGTCTCGTAG
CCCCGGTCTTGTGTGCGGCATCACGCTCAATATGACTAGCAGCGCCATGC
AGAGGTACAGTGTTTTGTTATGTGGGTCTATCTCGATTGTGCCGGTGTCG
TGTGGTGGTGGTGGGGATTGGGGGCCTCCGCTTCCATGCGTCATCATCAA
GCAAGCCTCCTTTTCTCGCCTTTGGTCTTGCCCTTTGGCAGCACCAGTGG
GCATTCGCGTAGCCACTACTGTGTGGTCTAGCATACGGACGATGACAGTA
TCGTTGTAACTCTGTGGCGGATTTGGTTTCAACCTCGTTGTGCGCTTGGA
AACCGACGTCAAACCCTCATTCGCCATCCCTCCCCACACAATGACATGCA
CTGCTTGCTTGCTGCCTCCACCGACCACGACCACCGGAGGGAATCTCGAG
AGCATGCTTTGGAGCTCTGGCATAAAGGGTGCAGCCATGGTGTGGAGAGG
GGGCGCAGATTTCTGGTCCGGGAAGGGACGCGTACTGCGGGGGGCGTTTT
CCTCGACAGGCCACAGGGGGACGGACACGGGCTATGGAGGGAGCTCTCGG
ACACAGTCGATCGACAAATACGAAGTAGTCAAGGTGGCGGTAACCGTCAT
CGGCACAATTGCGGCGGTTTCGAGCTTTATCTCATACGGCGTCCGTATCG
TCGACGAGAGAGAGAATAGGGCTGAGATCGCGCGTGTGCAGAACGAGGCG
GCTACGGAGATCAGGCGGATCGAGGGGGAGTGGAAGTCGAAAGAGCGCCA
GTGGAAGTCTAAAGAGGGCCAGTGGAAGGCGGAAGTCGCGCGCATCGAGG
GGGAGTGGAAAATGTCGGAGCGATTGTGGAAGGCGGAGGTGGAGCGATAT
AAGCGCGACCTCCAATTGGCCCATACTCGTGACTATGAGCCGTATCAGGC
GGCGATATCGCAGAAAGGGGAAAGAACAACGGGGGCAGGAAGCGGAGGAC
TGGAGAAGGAAGAGAAGAAGAACTAGCTTTTGGTATCCTGCGTAGATTAA
CAAGAAAGTGTACAGTGGCCAGAGTAAACATAGGCAAAAGACATAGGTAA
AGACATGTACAGTGGCCGGGGCGAATAAGGATAGATGGTTGTGAGGGGGT
TGGTACTCCTACACCACCAATGCAATAAGGAGGGCTCCCCAAAATGTTCA
AGCAGCGAGTTCTTCTTCCTCTTATCATTATTCTTTACTATCATCATGAT
CATCATCATCCTTCTTCTTGGTCGTTTTGTTCTTCTTCTTCTTTTTCTTC
TTTTTCTTCTTGTTCTTGTTCTTGCTCTTGTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTGTTCTTCTTCTTCCTCTTCTTCTTCT
TCTT
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protein sequence of jgi.p|Nanoce1779_2|611177

>mRNA_10358-protein ID=mRNA_10358-protein|Name=jgi.p|Nanoce1779_2|611177|organism=Nannochloropsis oceanica|type=polypeptide|length=212bp
MTCTACLLPPPTTTTGGNLESMLWSSGIKGAAMVWRGGADFWSGKGRVLR
GAFSSTGHRGTDTGYGGSSRTQSIDKYEVVKVAVTVIGTIAAVSSFISYG
VRIVDERENRAEIARVQNEAATEIRRIEGEWKSKERQWKSKEGQWKAEVA
RIEGEWKMSERLWKAEVERYKRDLQLAHTRDYEPYQAAISQKGERTTGAG
SGGLEKEEKKN*
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mRNA from alignment at scaffold_54:85843..87571+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10358 ID=mRNA_10358|Name=jgi.p|Nanoce1779_2|611177|organism=Nannochloropsis oceanica|type=mRNA|length=1729bp|location=Sequence derived from alignment at scaffold_54:85843..87571+ (Nannochloropsis oceanica)
ACGTGTTTGTTGTCAACAAGACGATTATCAAGGCCTGTGTCTGTGTATAA
TACAGCTGGAAGCAAGACGGCACGTAAGGTCAACAAGCGATATCGCCGCC
GTCGCAGTAGTTTGTGTGGTCTGAGGAGCCGACTACTTTGTGTCTCGTAG
CCCCGGTCTTGTGTGCGGCATCACGCTCAATATGACTAGCAGCGCCATGC
AGAGGTACAGTGTTTTGTTATGTGGGTCTATCTCGATTGTGCCGGTGTCG
TGTGGTGGTGGTGGGGATTGGGGGCCTCCGCTTCCATGCGTCATCATCAA
GCAAGCCTCCTTTTCTCGCCTTTGGTCTTGCCCTTTGGCAGCACCAGTGG
GCATTCGCGTAGCCACTACTGTGTGGTCTAGCATACGGACGATGACAGTA
TCGTTGTAACTCTGTGGCGGATTTGGTTTCAACCTCGTTGTGCGCTTGGA
AACCGACGTCAAACCCTCATTCGCCATCCCTCCCCACACAATGACATGCA
CTGCTTGCTTGCTGCCTCCACCGACCACGACCACCGGAGGGAATCTCGAG
AGCATGCTTTGGAGCTCTGGCATAAAGGGTGCAGCCATGGTGTGGAGAGG
GGGCGCAGATTTCTGGTCCGGTAAGGTGGATTGTGTAATGGATATTGGAG
GGAGGGCAAGATTTGGTCTTTTGGGAGGGGGGGGGGAGGGGAAGGGAGGA
GAGGGTGTTCGGTACACGCGACCGCACACTGCGCGAGGCATGTTGATCGA
CTCCCGTCTGATATAGTGTCTATTCCGTCTGAGATACGATGTGTGTGATG
GGGGTAAGTTTTCTACGCACAAGCCCAAATTCACGCACACAACAGGGAAG
GGACGCGTACTGCGGGGGGCGTTTTCCTCGACAGGCCACAGGGGGACGGA
CACGGGCTATGGAGGGAGCTCTCGGACACAGTCGATCGACAAATACGAAG
TAGTCAAGGTGGCGGTAACCGTCATCGGCACAATTGCGGCGGTTTCGAGC
TTTATCTCATACGGCGTCCGTATCGTCGACGAGAGAGAGAATAGGGCTGA
GATCGCGCGTGTGCAGAACGAGGCGGCTACGGAGATCAGGCGGATCGAGG
GGGAGTGGAAGTCGAAAGAGCGCCAGTGGAAGTCTAAAGAGGGCCAGTGG
AAGGCGGAAGTCGCGCGCATCGAGGGGGAGTGGAAAATGTCGGAGCGATT
GTGGAAGGCGGAGGTGGAGCGATATAAGCGCGACCTCCAATTGGCCCATA
CTCGTGACTATGAGCCGTATCAGGCGGCGATATCGCAGAAAGGGGAAAGA
ACAACGGGGGCAGGAAGCGGAGGACTGGAGAAGGAAGAGAAGAAGAACTA
GCTTTTGGTATCCTGCGTAGATTAACAAGAAAGTGTACAGTGGCCAGAGT
AAACATAGGCAAAAGACATAGGTAAAGACATGTACAGTGGCCGGGGCGAA
TAAGGATAGATGGTTGTGAGGGGGTTGGTACTCCTACACCACCAATGCAA
TAAGGAGGGCTCCCCAAAATGTTCAAGCAGCGAGTTCTTCTTCCTCTTAT
CATTATTCTTTACTATCATCATGATCATCATCATCCTTCTTCTTGGTCGT
TTTGTTCTTCTTCTTCTTTTTCTTCTTTTTCTTCTTGTTCTTGTTCTTGC
TCTTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTG
TTCTTCTTCTTCCTCTTCTTCTTCTTCTT
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Coding sequence (CDS) from alignment at scaffold_54:85843..87571+

>mRNA_10358 ID=mRNA_10358|Name=jgi.p|Nanoce1779_2|611177|organism=Nannochloropsis oceanica|type=CDS|length=1272bp|location=Sequence derived from alignment at scaffold_54:85843..87571+ (Nannochloropsis oceanica)
ATGACATGCACTGCTTGCTTGCTGCCTCCACCGACCACGACCACCGGAGG
GAATCTCGAGAGCATGCTTTGGAGCTCTGGCATAAAGGGTGCAGCCATGG
TGTGGAGAGGGGGCGCAGATTTCTGGTCCGGGAAGGGACGCGTACTGCGG
GGGGCGTTTTCCTCGACAGGCCACAGGGGGACGGACACGGGCTATGGAGG
GAGCTCTCGGACACAGTCGATCGACAAATACGAAGTAGTCAAGGTGGCGG
TAACCGTCATCGGCACAATTGCGGCGGTTTCGAGCTTTATCTCATACGGC
GTCCGTATCGTCGACGAGAGAGAGAATAGGGCTGAGATCGCGCGTGTGCA
GAACGAGGCGGCTACGGAGATCAGGCGGATCGAGGGGGAGTGGAAGTCGA
AAGAGCGCCAGTGGAAGTCTAAAGAGGGCCAGTGGAAGGCGGAAGTCGCG
CGCATCGAGGGGGAGTGGAAAATGTCGGAGCGATTGTGGAAGGCGGAGGT
GGAGCGATATAAGCGCGACCTCCAATTGGCCCATACTCGTGACTATGAGC
CGTATCAGGCGGCGATATCGCAGAAAGGGGAAAGAACAACGGGGGCAGGA
AGCGGAGGACTGGAGAAGGAAGAGAAGAAGAACTAGATGACATGCACTGC
TTGCTTGCTGCCTCCACCGACCACGACCACCGGAGGGAATCTCGAGAGCA
TGCTTTGGAGCTCTGGCATAAAGGGTGCAGCCATGGTGTGGAGAGGGGGC
GCAGATTTCTGGTCCGGGAAGGGACGCGTACTGCGGGGGGCGTTTTCCTC
GACAGGCCACAGGGGGACGGACACGGGCTATGGAGGGAGCTCTCGGACAC
AGTCGATCGACAAATACGAAGTAGTCAAGGTGGCGGTAACCGTCATCGGC
ACAATTGCGGCGGTTTCGAGCTTTATCTCATACGGCGTCCGTATCGTCGA
CGAGAGAGAGAATAGGGCTGAGATCGCGCGTGTGCAGAACGAGGCGGCTA
CGGAGATCAGGCGGATCGAGGGGGAGTGGAAGTCGAAAGAGCGCCAGTGG
AAGTCTAAAGAGGGCCAGTGGAAGGCGGAAGTCGCGCGCATCGAGGGGGA
GTGGAAAATGTCGGAGCGATTGTGGAAGGCGGAGGTGGAGCGATATAAGC
GCGACCTCCAATTGGCCCATACTCGTGACTATGAGCCGTATCAGGCGGCG
ATATCGCAGAAAGGGGAAAGAACAACGGGGGCAGGAAGCGGAGGACTGGA
GAAGGAAGAGAAGAAGAACTAG
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Synonyms
Publications