jgi.p|Nanoce1779_2|674771, mRNA_10357 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|674771
Unique NamemRNA_10357
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length882
Alignment locationscaffold_54:84496..85377 +

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Properties
Property NameValue
TranscriptId674857
TrackFilteredModels2
ProteinId674771
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_54supercontigscaffold_54:84496..85377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674771gene_10357Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674771mRNA_10357-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10357CDS_10357Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10357 ID=mRNA_10357|Name=jgi.p|Nanoce1779_2|674771|organism=Nannochloropsis oceanica|type=mRNA|length=882bp
CTTCTTGTTCTTCTGCTCCTTCTGCTCCTCCTCCTCCTCCTCATAAAACA
AGCTTAAAATGTGAAAGCTATACGTAACATTATGACTTTTACAATACCGC
CGCATGAAAACCTTTCCCTCATAAAATATCCATCATTTTTTCAAGGTACA
TAAGAGGGAGAGGTAGGAAAGGAAAGAGGAAGGTGAGGAGGGAGCAAGAA
GGCTAAGGCCCATCAATCCCACCATGGGTTGCACACTGCCACGGGATTAC
GTTTTATTTCGTGCATGGATGAAGACATACTCCCGGATGTTCGCACCTGT
CCCCCTTGCCGTGCTGAATGCACCGCCACATGATTCCTGTTAGACGGCCA
CTGTAAGCAGCAACTCGGTTGCAAGCCCTCGACAAGCCACACGGGGACTG
ACACGGGAGGTGGAGGGAGCTCTCGGACACAGTCGATCGACAAATACGAA
ATGGTCAAGGTGACGGTAGCTCTCATCGGCACGATTGCGGCGGTTTCGAT
CTCTTTCGCATACGGCGTGCGTCATATCGAGGGGGAGTGGAAGTCGGAAG
TCGCGCGCGTGCAGAACAAGGCGGCTACGGAGATCAGGCGGATCGAGGGG
GAGTGGAAGTCTAAAGAGTGCCAGTGGAAGTCGAAAGAGGGCCGGCGGAA
GGCGGAAGTCGCGCGCATCGAGGGCCAGTGGAAGGCGGAAGTAAAGCGGA
TCGAGGGGGAGTGGAAAATGTCGGAGCGATTGTGGAAGGCGGAGGTGGAG
CGATATAAGCGCGACCTCCAATTGGCCCATACTCGTGACTATGAGCCGTA
TCAGGCGGCGATATCGCAGAAAGGGGAAAGAACAACGGGGGCAGGAAGCG
GAGGACTGGAGAAGGAAGAGAAGAAGAACTAG
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protein sequence of jgi.p|Nanoce1779_2|674771

>mRNA_10357-protein ID=mRNA_10357-protein|Name=jgi.p|Nanoce1779_2|674771|organism=Nannochloropsis oceanica|type=polypeptide|length=144bp
MVKVTVALIGTIAAVSISFAYGVRHIEGEWKSEVARVQNKAATEIRRIEG
EWKSKECQWKSKEGRRKAEVARIEGQWKAEVKRIEGEWKMSERLWKAEVE
RYKRDLQLAHTRDYEPYQAAISQKGERTTGAGSGGLEKEEKKN*
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mRNA from alignment at scaffold_54:84496..85377+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10357 ID=mRNA_10357|Name=jgi.p|Nanoce1779_2|674771|organism=Nannochloropsis oceanica|type=mRNA|length=882bp|location=Sequence derived from alignment at scaffold_54:84496..85377+ (Nannochloropsis oceanica)
CTTCTTGTTCTTCTGCTCCTTCTGCTCCTCCTCCTCCTCCTCATAAAACA
AGCTTAAAATGTGAAAGCTATACGTAACATTATGACTTTTACAATACCGC
CGCATGAAAACCTTTCCCTCATAAAATATCCATCATTTTTTCAAGGTACA
TAAGAGGGAGAGGTAGGAAAGGAAAGAGGAAGGTGAGGAGGGAGCAAGAA
GGCTAAGGCCCATCAATCCCACCATGGGTTGCACACTGCCACGGGATTAC
GTTTTATTTCGTGCATGGATGAAGACATACTCCCGGATGTTCGCACCTGT
CCCCCTTGCCGTGCTGAATGCACCGCCACATGATTCCTGTTAGACGGCCA
CTGTAAGCAGCAACTCGGTTGCAAGCCCTCGACAAGCCACACGGGGACTG
ACACGGGAGGTGGAGGGAGCTCTCGGACACAGTCGATCGACAAATACGAA
ATGGTCAAGGTGACGGTAGCTCTCATCGGCACGATTGCGGCGGTTTCGAT
CTCTTTCGCATACGGCGTGCGTCATATCGAGGGGGAGTGGAAGTCGGAAG
TCGCGCGCGTGCAGAACAAGGCGGCTACGGAGATCAGGCGGATCGAGGGG
GAGTGGAAGTCTAAAGAGTGCCAGTGGAAGTCGAAAGAGGGCCGGCGGAA
GGCGGAAGTCGCGCGCATCGAGGGCCAGTGGAAGGCGGAAGTAAAGCGGA
TCGAGGGGGAGTGGAAAATGTCGGAGCGATTGTGGAAGGCGGAGGTGGAG
CGATATAAGCGCGACCTCCAATTGGCCCATACTCGTGACTATGAGCCGTA
TCAGGCGGCGATATCGCAGAAAGGGGAAAGAACAACGGGGGCAGGAAGCG
GAGGACTGGAGAAGGAAGAGAAGAAGAACTAG
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Coding sequence (CDS) from alignment at scaffold_54:84496..85377+

>mRNA_10357 ID=mRNA_10357|Name=jgi.p|Nanoce1779_2|674771|organism=Nannochloropsis oceanica|type=CDS|length=432bp|location=Sequence derived from alignment at scaffold_54:84496..85377+ (Nannochloropsis oceanica)
ATGGTCAAGGTGACGGTAGCTCTCATCGGCACGATTGCGGCGGTTTCGAT
CTCTTTCGCATACGGCGTGCGTCATATCGAGGGGGAGTGGAAGTCGGAAG
TCGCGCGCGTGCAGAACAAGGCGGCTACGGAGATCAGGCGGATCGAGGGG
GAGTGGAAGTCTAAAGAGTGCCAGTGGAAGTCGAAAGAGGGCCGGCGGAA
GGCGGAAGTCGCGCGCATCGAGGGCCAGTGGAAGGCGGAAGTAAAGCGGA
TCGAGGGGGAGTGGAAAATGTCGGAGCGATTGTGGAAGGCGGAGGTGGAG
CGATATAAGCGCGACCTCCAATTGGCCCATACTCGTGACTATGAGCCGTA
TCAGGCGGCGATATCGCAGAAAGGGGAAAGAACAACGGGGGCAGGAAGCG
GAGGACTGGAGAAGGAAGAGAAGAAGAACTAG
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Synonyms
Publications