jgi.p|Nanoce1779_2|611169, mRNA_10356 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611169
Unique NamemRNA_10356
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1244
Alignment locationscaffold_54:82202..83593 -

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Properties
Property NameValue
TranscriptId611255
TrackFilteredModels2
ProteinId611169
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_54supercontigscaffold_54:82202..83593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611169gene_10356Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611169mRNA_10356-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10356CDS_10356Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10356 ID=mRNA_10356|Name=jgi.p|Nanoce1779_2|611169|organism=Nannochloropsis oceanica|type=mRNA|length=1244bp
CTGCCACCAACCTCCCCCTTGCACATCCTCGAACCATTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCTTCGTCCTCCGCATTCTCA
CCACGCTCTCCTCTTTGACCTCCAGTCTCACTGCGCCTCCCCGCTTGAGC
AGGGCCGAAAAAAAAGCCGTCAAGTACGCCAATGCCAAGCAACGGCTTCG
ATACACGCGACAAAAATACCACCGGAAAAAGTCGCAAATTTACAAGGAGC
TCACGGAGGAGGAGCAGACAGATGTGAAGGCAAGAATGATGGCGAGAAAG
AAGGAAAGGAAGGAGAGGTTTACGGCTCTGCTTGCGGTGGACGCGGGATG
GTTGAAGAAGAGGAAGGAAAGCAGGAGGACAAAGAGGGAAGCAAGGGAAA
TGGCCAAGAGAGAAGAGGAGGAGGGGGTGGTGGATAGGGAGTACAGGTCA
GACGACGACTTCTCTTCCTTTCCTTTTTCCCTCCCTCCCCACCTCCGTCT
CGCCCTTGACCTTCATTACGGCGAATCCATCCACGGCCTCCGGGGCACCC
GCTCCCTAACCCAGCAGGTCGGATGGTGCTACCATTCCCTCAAATGCGCC
TCTTCCTTCCACAACACCCCCGTATTCCACATTACCTCCTTCCACGGCCT
CACTGCAGAGATGCTCAAGGGCTCCGGGATTCACAATTGGCCCATATATA
GACATGAGGAGGAGCTGCCGGCGGTGTTTCCCCGGGAGAGCATTGTTTAT
TTGTCGCCAGACGCGGAGGAAGTCTTGGAGGGGCCTCTGGATCTCTCGAA
AGTCTACGTCATCGGCGGCATCGTGGACAGGACCGTCGTCCGTGGCATCT
CGCAAGAGGTGGCCACTAGGTGGCAAATAAAATCGGCACGTTTACCTCTC
GAATATTTGAATTTAAAATCAAAACAAGCAACGGCGGCGTTGAATGTGGA
TACGGTGGTCAAGGTGATGATGGATGTGCATGCGAACGGGGGAGACTGGC
CGAGGGCGTTGGAGGGGTGTGTGCCCAAGAGGAAGGCGGTGGAGAAGAGC
AAAAGAGAGCTGAAGCGAGAGAAGAGGGGGAGGGAGGAGAGGGGAAAGGA
GGAGGAGGGGAAGGAGTAATAAGGGGAAGAAGAGAAATAGGTGTACTTTG
AAAAGGGAGGGCAATAATAGAGAGGAATGTGACATAAATAAGAGAAAGCC
CCGGTCGGTCTCAAAATAAAGTGCTTGATAATTGACATCACAAA
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protein sequence of jgi.p|Nanoce1779_2|611169

>mRNA_10356-protein ID=mRNA_10356-protein|Name=jgi.p|Nanoce1779_2|611169|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
MMARKKERKERFTALLAVDAGWLKKRKESRRTKREAREMAKREEEEGVVD
REYRSDDDFSSFPFSLPPHLRLALDLHYGESIHGLRGTRSLTQQVGWCYH
SLKCASSFHNTPVFHITSFHGLTAEMLKGSGIHNWPIYRHEEELPAVFPR
ESIVYLSPDAEEVLEGPLDLSKVYVIGGIVDRTVVRGISQEVATRWQIKS
ARLPLEYLNLKSKQATAALNVDTVVKVMMDVHANGGDWPRALEGCVPKRK
AVEKSKRELKREKRGREERGKEEEGKE*
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mRNA from alignment at scaffold_54:82202..83593-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10356 ID=mRNA_10356|Name=jgi.p|Nanoce1779_2|611169|organism=Nannochloropsis oceanica|type=mRNA|length=1392bp|location=Sequence derived from alignment at scaffold_54:82202..83593- (Nannochloropsis oceanica)
CTGCCACCAACCTCCCCCTTGCACATCCTCGAACCATTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCTTCGTCCTCCGCATTCTCA
CCACGCTCTCCTCTTTGACCTCCAGTCTCACTGCGCCTCCCCGCTTGAGC
AGGGCCGAAAAAAAAGCCGTCAAGTACGCCAATGCCAAGCAACGGCTTCG
ATACACGCGACAAAAATACCACCGGAAAAAGTCGCAAATTTACAAGGAGC
TCACGGAGGAGGAGCAGACAGATGTGAAGGCAAGAATGATGGCGAGAAAG
AAGGAAAGGAAGGAGAGGTTTACGGCTCTGCTTGCGGTGGACGCGGGATG
GTTGAAGAAGAGGAAGGAAAGCAGGAGGACAAAGAGGGAAGCAAGGGAAA
TGGCCAAGAGAGAAGAGGAGGAGGGGGTGGTGGATAGGGAGTACAGGTCA
GACGACGACTTCTCTTCCTTTCCTTTTTCCCTCCCTCCCCACCTCCGTCT
CGCCCTTGACCTTCATTACGGCGAATCCATCCACGGCCTCCGGGGCACCC
GCTCCCTAACCCAGCAGGTCGGATGGTGCTACCATTCCCTCAAATGCGCC
TCTTCCTTCCACAACACCCCCGTATTCCACATTACCTCCTTCCACGGCCT
CACTGCAGAGATGCTCAAGGGCTCCGGGATTCACAATTGGCCCATATATA
GACATGAGGAGGAGCTGCCGGCGGTGTTTCCCCGGGAGAGCATTGTTTAT
TTGTCGCCAGACGCGGAGGAAGTCTTGGAGGGGCCTCTGGATCTCTCGAA
AGGTAAGGGAGGAGCAATTTGTGTGAAGAGAGAGAGGGAAAGAGGATACG
TCCTGCGTGTATTTCTACTGCTCTTCTTCGGAAGCACATGGTTATCTTTT
GATGCATTTCCACTCAGCCCACTTGCTTTCCCTTCCTCCCTGCCCTCCAG
TCTACGTCATCGGCGGCATCGTGGACAGGACCGTCGTCCGTGGCATCTCG
CAAGAGGTGGCCACTAGGTGGCAAATAAAATCGGCACGTTTACCTCTCGA
ATATTTGAATTTAAAATCAAAACAAGCAACGGCGGCGTTGAATGTGGATA
CGGTGGTCAAGGTGATGATGGATGTGCATGCGAACGGGGGAGACTGGCCG
AGGGCGTTGGAGGGGTGTGTGCCCAAGAGGAAGGCGGTGGAGAAGAGCAA
AAGAGAGCTGAAGCGAGAGAAGAGGGGGAGGGAGGAGAGGGGAAAGGAGG
AGGAGGGGAAGGAGTAATAAGGGGAAGAAGAGAAATAGGTGTACTTTGAA
AAGGGAGGGCAATAATAGAGAGGAATGTGACATAAATAAGAGAAAGCCCC
GGTCGGTCTCAAAATAAAGTGCTTGATAATTGACATCACAAA
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Coding sequence (CDS) from alignment at scaffold_54:82202..83593-

>mRNA_10356 ID=mRNA_10356|Name=jgi.p|Nanoce1779_2|611169|organism=Nannochloropsis oceanica|type=CDS|length=1668bp|location=Sequence derived from alignment at scaffold_54:82202..83593- (Nannochloropsis oceanica)
TCTACGTCATCGGCGGCATCGTGGACAGGACCGTCGTCCGTGGCATCTCG
CAAGAGGTGGCCACTAGGTGGCAAATAAAATCGGCACGTTTACCTCTCGA
ATATTTGAATTTAAAATCAAAACAAGCAACGGCGGCGTTGAATGTGGATA
CGGTGGTCAAGGTGATGATGGATGTGCATGCGAACGGGGGAGACTGGCCG
AGGGCGTTGGAGGGGTGTGTGCCCAAGAGGAAGGCGGTGGAGAAGAGCAA
AAGAGAGCTGAAGCGAGAGAAGAGGGGGAGGGAGGAGAGGGGAAAGGAGG
AGGAGGGGAAGGAGTAAATGATGGCGAGAAAGAAGGAAAGGAAGGAGAGG
TTTACGGCTCTGCTTGCGGTGGACGCGGGATGGTTGAAGAAGAGGAAGGA
AAGCAGGAGGACAAAGAGGGAAGCAAGGGAAATGGCCAAGAGAGAAGAGG
AGGAGGGGGTGGTGGATAGGGAGTACAGGTCAGACGACGACTTCTCTTCC
TTTCCTTTTTCCCTCCCTCCCCACCTCCGTCTCGCCCTTGACCTTCATTA
CGGCGAATCCATCCACGGCCTCCGGGGCACCCGCTCCCTAACCCAGCAGG
TCGGATGGTGCTACCATTCCCTCAAATGCGCCTCTTCCTTCCACAACACC
CCCGTATTCCACATTACCTCCTTCCACGGCCTCACTGCAGAGATGCTCAA
GGGCTCCGGGATTCACAATTGGCCCATATATAGACATGAGGAGGAGCTGC
CGGCGGTGTTTCCCCGGGAGAGCATTGTTTATTTGTCGCCAGACGCGGAG
GAAGTCTTGGAGGGGCCTCTGGATCTCTCGAAAGTCTACGTCATCGGCGG
CATCGTGGACAGGACCGTCGTCCGTGGCATCTCGCAAGAGGTGGCCACTA
GGTGGCAAATAAAATCGGCACGTTTACCTCTCGAATATTTGAATTTAAAA
TCAAAACAAGCAACGGCGGCGTTGAATGTGGATACGGTGGTCAAGGTGAT
GATGGATGTGCATGCGAACGGGGGAGACTGGCCGAGGGCGTTGGAGGGGT
GTGTGCCCAAGAGGAAGGCGGTGGAGAAGAGCAAAAGAGAGCTGAAGCGA
GAGAAGAGGGGGAGGGAGGAGAGGGGAAAGGAGGAGGAGGGGAAGGAGTA
AATGATGGCGAGAAAGAAGGAAAGGAAGGAGAGGTTTACGGCTCTGCTTG
CGGTGGACGCGGGATGGTTGAAGAAGAGGAAGGAAAGCAGGAGGACAAAG
AGGGAAGCAAGGGAAATGGCCAAGAGAGAAGAGGAGGAGGGGGTGGTGGA
TAGGGAGTACAGGTCAGACGACGACTTCTCTTCCTTTCCTTTTTCCCTCC
CTCCCCACCTCCGTCTCGCCCTTGACCTTCATTACGGCGAATCCATCCAC
GGCCTCCGGGGCACCCGCTCCCTAACCCAGCAGGTCGGATGGTGCTACCA
TTCCCTCAAATGCGCCTCTTCCTTCCACAACACCCCCGTATTCCACATTA
CCTCCTTCCACGGCCTCACTGCAGAGATGCTCAAGGGCTCCGGGATTCAC
AATTGGCCCATATATAGACATGAGGAGGAGCTGCCGGCGGTGTTTCCCCG
GGAGAGCATTGTTTATTTGTCGCCAGACGCGGAGGAAGTCTTGGAGGGGC
CTCTGGATCTCTCGAAAG
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Synonyms
Publications