jgi.p|Nanoce1779_2|569805, mRNA_10355 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|569805
Unique Name	mRNA_10355
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	864
Alignment location	scaffold_54:80009..81937 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	569891
Track	FilteredModels2
ProteinId	569805

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_54	supercontig	scaffold_54:80009..81937 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|569805	gene_10355	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|569805	mRNA_10355-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10355	CDS_10355	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_54:80009..81937+
coding sequence from alignment at scaffold_54:80009..81937+

mRNA sequence

>mRNA_10355 ID=mRNA_10355|Name=jgi.p|Nanoce1779_2|569805|organism=Nannochloropsis oceanica|type=mRNA|length=864bp
ATGCCCCCAAAAGGCAAGAAGGCCGATGCCAAGAAGGCGGAGAGGCTGAT
CGAGGACAAGACTTTCGGCCTCAAAAACAAGAATAAGAGCAAAAAGGTCC
AGCAGTACGTGGCGCACGTGACGACCCAGACAAAGCACAACGTCGGGATA
AAGACCGAGGCAGAAAAAGCGGCGGCTCTCAAGGCGAAGAAGGAGGCCAA
GGAGAAGGAGGATGTTGAGCTCAAGCTTCTCTTCATGCAGATGCAAGCAG
GAGCGGGGAAGACGAGCAAAGCAATGGAGGCAGCGGCCGAGGCGGCGAAA
GCTAAGAGAGACGCGGCCATGGCGGCCAAGGGCGGAAAGGGGGAGGCACA
ATGGATTGAGATTGACATGACGGGGAAGCCGCTGGAGGAGGTCATCGAGT
ACGAGCGTCAAAAATTGACATTTTTTAAGAAGAATGTGACCCCTGTCACG
GAGGCGTCGTTCGCGCAATGGAAGAAGGACAAGGCCGAGAAGAGGAAGAG
GGAGAACGCGGAGAGGGTCAAGGCGGAGATGGCCAAGAAGACCAAAGGCA
AGGGTCTGAGCGTACTGAGTGGAAAAGCGCTTTTCGAGTACGACGCGACC
CTGTTTGTCGACGACGAGGAAGCGGGAGAGGAGCAGGTGGATGTGAAGAA
CTTGAAATCGTTGATGGAGGAGGAGGACGAGGAGAGGGAGAGGGGGGGAG
GGGGCGAGGAGGAAGGGGAGGGGCTTGCGGTGGCGGTACAGGAGAATTTG
TACTTGGAGGAGGAGGATGATCTTGACGACCTAGACGATGACGATGATGA
GGAGGAGGAAGCTGAGAGGCAGGATGGGGGGAGTGCTGGGGAAGGAGGGG
GGAAGAGGGGTTGA

protein sequence of jgi.p|Nanoce1779_2|569805

>mRNA_10355-protein ID=mRNA_10355-protein|Name=jgi.p|Nanoce1779_2|569805|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MPPKGKKADAKKAERLIEDKTFGLKNKNKSKKVQQYVAHVTTQTKHNVGI
KTEAEKAAALKAKKEAKEKEDVELKLLFMQMQAGAGKTSKAMEAAAEAAK
AKRDAAMAAKGGKGEAQWIEIDMTGKPLEEVIEYERQKLTFFKKNVTPVT
EASFAQWKKDKAEKRKRENAERVKAEMAKKTKGKGLSVLSGKALFEYDAT
LFVDDEEAGEEQVDVKNLKSLMEEEDEERERGGGGEEEGEGLAVAVQENL
YLEEEDDLDDLDDDDDEEEEAERQDGGSAGEGGGKRG*

mRNA from alignment at scaffold_54:80009..81937+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10355 ID=mRNA_10355|Name=jgi.p|Nanoce1779_2|569805|organism=Nannochloropsis oceanica|type=mRNA|length=1929bp|location=Sequence derived from alignment at scaffold_54:80009..81937+ (Nannochloropsis oceanica)
ATGCCCCCAAAAGGCAAGAAGGCCGATGCCAAGAAGGCGGAGAGGCTGAT
CGAGGACAAGACTTTCGGCCTCAAAAACAAGAATAAGAGCAAAAAGGTGC
GTTTGGGTGAGAAGAGGAAAGGGGGGAGAAGACGGAGAGATCGTCGGGAT
GGAACGGATGTAGGTAGGCATGCAACACGACTCACTTTCTGTCGCGAGCG
TTGGCATGGTGGCCATCGGACGTGGGTCCGCTTGAAGACAATCGATCGTT
CCACCGGAACTGACGCTCCCTCTCTCCTTCTTTCCCTTCATTTCTTCCTC
GGCCCGTCCCATCCATCCACAGGTCCAGCAGTACGTGGCGCACGTGACGA
CCCAGACAAAGCACAACGTCGGGATAAAGACCGAGGCAGAAAAAGCGGCG
GCTCTCAAGGCGAAGAAGGAGGCCAAGGAGAAGGAGGATGTTGAGCTCAA
GCTTCTCTTCATGCAGGTAAAGAAAGGAGGGAGGGAGGGAGGGAGGGAAT
TTGGTTGGGGGGAAGGCGGGTCAGGCACTTCATTCATACAGACTCACTCG
TCTCTCCCTCCCGCCCTCCCTCCCTTCCTTCCTTCCTCATTTCCCCAGAT
GCAAGCAGGAGCGGGGAAGACGAGCAAAGCAATGGAGGCAGCGGCCGAGG
CGGCGAAAGCTAAGAGAGACGCGGCCATGGCGGCCAAGGGCGGAAAGGGG
GAGGCACAATGGATTGAGATTGACATGACGGGGAAGCCGCTGGAGGAGGT
AGGTAGGTAGGGAGGGAGGGAGGGAGAGAGAGAAGGAGGGAGAGAGGAAG
AGACGCAGTCGATTGAGATGGGCATGTTAAAATGAATCTCTGGAGGGGGG
AGGGAGAGAGGGACAGAGAGGGACGGAGAGATACCTACGTGCTTCATTCC
CTCTGTTGATGGCCGATTACTATTATTTTCCAACACTCTCTGCCATCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCTCTCTTTCTCTCCCTCCCTCCCTCC
CTCCCTAGGTCATCGAGTACGAGCGTCAAAAATTGACATTTTTTAAGAAG
AATGTGACCCCTGTCACGGTACGTCGCACGCGCAGGAGGGAGGGAGGGAG
GGAGGAAGGGAGGGAGGGAGGGGGGAAGGGGAGGTGTGGTGATGGCGTGA
GAATTTACGGACCCGCTTACCCGTACTCTCTTCCTTTGATTATTCCCCGT
CGTCATCTTATCATCTATAGGAGGCGTCGTTCGCGCAATGGAAGAAGGAC
AAGGCCGAGAAGAGGAAGAGGGAGAACGCGGAGAGGGTGAGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGAGAGGTAGTAGGGAGGGAGGAAAAGAGATGCCGGGCCAGTCA
TGCCGTTGCTTTTGTCCAGGGGATCGGAGGGAGCGCAAAGCTTTATACAC
GTCAACGGAAGCCCCTGTGTAGACACTCACCTTCTCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCGCCCGGACCAGGTCAAGGCGGAGATGGCCA
AGAAGACCAAAGGCAAGGGTCTGAGCGTACTGAGTGGAAAAGCGCTTTTC
GAGTACGACGCGACCCTGTTTGTCGACGACGAGGAAGCGGGAGAGGAGCA
GGTGGATGTGAAGAACTTGAAATCGTTGATGGAGGAGGAGGACGAGGAGA
GGGAGAGGGGGGGAGGGGGCGAGGAGGAAGGGGAGGGGCTTGCGGTGGCG
GTACAGGAGAATTTGTACTTGGAGGAGGAGGATGATCTTGACGACCTAGA
CGATGACGATGATGAGGAGGAGGAAGCTGAGAGGCAGGATGGGGGGAGTG
CTGGGGAAGGAGGGGGGAAGAGGGGTTGA

Coding sequence (CDS) from alignment at scaffold_54:80009..81937+

>mRNA_10355 ID=mRNA_10355|Name=jgi.p|Nanoce1779_2|569805|organism=Nannochloropsis oceanica|type=CDS|length=5184bp|location=Sequence derived from alignment at scaffold_54:80009..81937+ (Nannochloropsis oceanica)
ATGCCCCCAAAAGGCAAGAAGGCCGATGCCAAGAAGGCGGAGAGGCTGAT
CGAGGACAAGACTTTCGGCCTCAAAAACAAGAATAAGAGCAAAAAGGTCC
AGCAGTACGTGGCGCACGTGACGACCCAGACAAAGCACAACGTCGGGATA
AAGACCGAGGCAGAAAAAGCGGCGGCTCTCAAGGCGAAGAAGGAGGCCAA
GGAGAAGGAGGATGTTGAGCTCAAGCTTCTCTTCATGCAGATGCAAGCAG
GAGCGGGGAAGACGAGCAAAGCAATGGAGGCAGCGGCCGAGGCGGCGAAA
GCTAAGAGAGACGCGGCCATGGCGGCCAAGGGCGGAAAGGGGGAGGCACA
ATGGATTGAGATTGACATGACGGGGAAGCCGCTGGAGGAGGTCATCGAGT
ACGAGCGTCAAAAATTGACATTTTTTAAGAAGAATGTGACCCCTGTCACG
GAGGCGTCGTTCGCGCAATGGAAGAAGGACAAGGCCGAGAAGAGGAAGAG
GGAGAACGCGGAGAGGGTCAAGGCGGAGATGGCCAAGAAGACCAAAGGCA
AGGGTCTGAGCGTACTGAGTGGAAAAGCGCTTTTCGAGTACGACGCGACC
CTGTTTGTCGACGACGAGGAAGCGGGAGAGGAGCAGGTGGATGTGAAGAA
CTTGAAATCGTTGATGGAGGAGGAGGACGAGGAGAGGGAGAGGGGGGGAG
GGGGCGAGGAGGAAGGGGAGGGGCTTGCGGTGGCGGTACAGGAGAATTTG
TACTTGGAGGAGGAGGATGATCTTGACGACCTAGACGATGACGATGATGA
GGAGGAGGAAGCTGAGAGGCAGGATGGGGGGAGTGCTGGGGAAGGAGGGG
GGAAGAGGGGTTGAATGCCCCCAAAAGGCAAGAAGGCCGATGCCAAGAAG
GCGGAGAGGCTGATCGAGGACAAGACTTTCGGCCTCAAAAACAAGAATAA
GAGCAAAAAGGTCCAGCAGTACGTGGCGCACGTGACGACCCAGACAAAGC
ACAACGTCGGGATAAAGACCGAGGCAGAAAAAGCGGCGGCTCTCAAGGCG
AAGAAGGAGGCCAAGGAGAAGGAGGATGTTGAGCTCAAGCTTCTCTTCAT
GCAGATGCAAGCAGGAGCGGGGAAGACGAGCAAAGCAATGGAGGCAGCGG
CCGAGGCGGCGAAAGCTAAGAGAGACGCGGCCATGGCGGCCAAGGGCGGA
AAGGGGGAGGCACAATGGATTGAGATTGACATGACGGGGAAGCCGCTGGA
GGAGGTCATCGAGTACGAGCGTCAAAAATTGACATTTTTTAAGAAGAATG
TGACCCCTGTCACGGAGGCGTCGTTCGCGCAATGGAAGAAGGACAAGGCC
GAGAAGAGGAAGAGGGAGAACGCGGAGAGGGTCAAGGCGGAGATGGCCAA
GAAGACCAAAGGCAAGGGTCTGAGCGTACTGAGTGGAAAAGCGCTTTTCG
AGTACGACGCGACCCTGTTTGTCGACGACGAGGAAGCGGGAGAGGAGCAG
GTGGATGTGAAGAACTTGAAATCGTTGATGGAGGAGGAGGACGAGGAGAG
GGAGAGGGGGGGAGGGGGCGAGGAGGAAGGGGAGGGGCTTGCGGTGGCGG
TACAGGAGAATTTGTACTTGGAGGAGGAGGATGATCTTGACGACCTAGAC
GATGACGATGATGAGGAGGAGGAAGCTGAGAGGCAGGATGGGGGGAGTGC
TGGGGAAGGAGGGGGGAAGAGGGGTTGAATGCCCCCAAAAGGCAAGAAGG
CCGATGCCAAGAAGGCGGAGAGGCTGATCGAGGACAAGACTTTCGGCCTC
AAAAACAAGAATAAGAGCAAAAAGGTCCAGCAGTACGTGGCGCACGTGAC
GACCCAGACAAAGCACAACGTCGGGATAAAGACCGAGGCAGAAAAAGCGG
CGGCTCTCAAGGCGAAGAAGGAGGCCAAGGAGAAGGAGGATGTTGAGCTC
AAGCTTCTCTTCATGCAGATGCAAGCAGGAGCGGGGAAGACGAGCAAAGC
AATGGAGGCAGCGGCCGAGGCGGCGAAAGCTAAGAGAGACGCGGCCATGG
CGGCCAAGGGCGGAAAGGGGGAGGCACAATGGATTGAGATTGACATGACG
GGGAAGCCGCTGGAGGAGGTCATCGAGTACGAGCGTCAAAAATTGACATT
TTTTAAGAAGAATGTGACCCCTGTCACGGAGGCGTCGTTCGCGCAATGGA
AGAAGGACAAGGCCGAGAAGAGGAAGAGGGAGAACGCGGAGAGGGTCAAG
GCGGAGATGGCCAAGAAGACCAAAGGCAAGGGTCTGAGCGTACTGAGTGG
AAAAGCGCTTTTCGAGTACGACGCGACCCTGTTTGTCGACGACGAGGAAG
CGGGAGAGGAGCAGGTGGATGTGAAGAACTTGAAATCGTTGATGGAGGAG
GAGGACGAGGAGAGGGAGAGGGGGGGAGGGGGCGAGGAGGAAGGGGAGGG
GCTTGCGGTGGCGGTACAGGAGAATTTGTACTTGGAGGAGGAGGATGATC
TTGACGACCTAGACGATGACGATGATGAGGAGGAGGAAGCTGAGAGGCAG
GATGGGGGGAGTGCTGGGGAAGGAGGGGGGAAGAGGGGTTGAATGCCCCC
AAAAGGCAAGAAGGCCGATGCCAAGAAGGCGGAGAGGCTGATCGAGGACA
AGACTTTCGGCCTCAAAAACAAGAATAAGAGCAAAAAGGTCCAGCAGTAC
GTGGCGCACGTGACGACCCAGACAAAGCACAACGTCGGGATAAAGACCGA
GGCAGAAAAAGCGGCGGCTCTCAAGGCGAAGAAGGAGGCCAAGGAGAAGG
AGGATGTTGAGCTCAAGCTTCTCTTCATGCAGATGCAAGCAGGAGCGGGG
AAGACGAGCAAAGCAATGGAGGCAGCGGCCGAGGCGGCGAAAGCTAAGAG
AGACGCGGCCATGGCGGCCAAGGGCGGAAAGGGGGAGGCACAATGGATTG
AGATTGACATGACGGGGAAGCCGCTGGAGGAGGTCATCGAGTACGAGCGT
CAAAAATTGACATTTTTTAAGAAGAATGTGACCCCTGTCACGGAGGCGTC
GTTCGCGCAATGGAAGAAGGACAAGGCCGAGAAGAGGAAGAGGGAGAACG
CGGAGAGGGTCAAGGCGGAGATGGCCAAGAAGACCAAAGGCAAGGGTCTG
AGCGTACTGAGTGGAAAAGCGCTTTTCGAGTACGACGCGACCCTGTTTGT
CGACGACGAGGAAGCGGGAGAGGAGCAGGTGGATGTGAAGAACTTGAAAT
CGTTGATGGAGGAGGAGGACGAGGAGAGGGAGAGGGGGGGAGGGGGCGAG
GAGGAAGGGGAGGGGCTTGCGGTGGCGGTACAGGAGAATTTGTACTTGGA
GGAGGAGGATGATCTTGACGACCTAGACGATGACGATGATGAGGAGGAGG
AAGCTGAGAGGCAGGATGGGGGGAGTGCTGGGGAAGGAGGGGGGAAGAGG
GGTTGAATGCCCCCAAAAGGCAAGAAGGCCGATGCCAAGAAGGCGGAGAG
GCTGATCGAGGACAAGACTTTCGGCCTCAAAAACAAGAATAAGAGCAAAA
AGGTCCAGCAGTACGTGGCGCACGTGACGACCCAGACAAAGCACAACGTC
GGGATAAAGACCGAGGCAGAAAAAGCGGCGGCTCTCAAGGCGAAGAAGGA
GGCCAAGGAGAAGGAGGATGTTGAGCTCAAGCTTCTCTTCATGCAGATGC
AAGCAGGAGCGGGGAAGACGAGCAAAGCAATGGAGGCAGCGGCCGAGGCG
GCGAAAGCTAAGAGAGACGCGGCCATGGCGGCCAAGGGCGGAAAGGGGGA
GGCACAATGGATTGAGATTGACATGACGGGGAAGCCGCTGGAGGAGGTCA
TCGAGTACGAGCGTCAAAAATTGACATTTTTTAAGAAGAATGTGACCCCT
GTCACGGAGGCGTCGTTCGCGCAATGGAAGAAGGACAAGGCCGAGAAGAG
GAAGAGGGAGAACGCGGAGAGGGTCAAGGCGGAGATGGCCAAGAAGACCA
AAGGCAAGGGTCTGAGCGTACTGAGTGGAAAAGCGCTTTTCGAGTACGAC
GCGACCCTGTTTGTCGACGACGAGGAAGCGGGAGAGGAGCAGGTGGATGT
GAAGAACTTGAAATCGTTGATGGAGGAGGAGGACGAGGAGAGGGAGAGGG
GGGGAGGGGGCGAGGAGGAAGGGGAGGGGCTTGCGGTGGCGGTACAGGAG
AATTTGTACTTGGAGGAGGAGGATGATCTTGACGACCTAGACGATGACGA
TGATGAGGAGGAGGAAGCTGAGAGGCAGGATGGGGGGAGTGCTGGGGAAG
GAGGGGGGAAGAGGGGTTGAATGCCCCCAAAAGGCAAGAAGGCCGATGCC
AAGAAGGCGGAGAGGCTGATCGAGGACAAGACTTTCGGCCTCAAAAACAA
GAATAAGAGCAAAAAGGTCCAGCAGTACGTGGCGCACGTGACGACCCAGA
CAAAGCACAACGTCGGGATAAAGACCGAGGCAGAAAAAGCGGCGGCTCTC
AAGGCGAAGAAGGAGGCCAAGGAGAAGGAGGATGTTGAGCTCAAGCTTCT
CTTCATGCAGATGCAAGCAGGAGCGGGGAAGACGAGCAAAGCAATGGAGG
CAGCGGCCGAGGCGGCGAAAGCTAAGAGAGACGCGGCCATGGCGGCCAAG
GGCGGAAAGGGGGAGGCACAATGGATTGAGATTGACATGACGGGGAAGCC
GCTGGAGGAGGTCATCGAGTACGAGCGTCAAAAATTGACATTTTTTAAGA
AGAATGTGACCCCTGTCACGGAGGCGTCGTTCGCGCAATGGAAGAAGGAC
AAGGCCGAGAAGAGGAAGAGGGAGAACGCGGAGAGGGTCAAGGCGGAGAT
GGCCAAGAAGACCAAAGGCAAGGGTCTGAGCGTACTGAGTGGAAAAGCGC
TTTTCGAGTACGACGCGACCCTGTTTGTCGACGACGAGGAAGCGGGAGAG
GAGCAGGTGGATGTGAAGAACTTGAAATCGTTGATGGAGGAGGAGGACGA
GGAGAGGGAGAGGGGGGGAGGGGGCGAGGAGGAAGGGGAGGGGCTTGCGG
TGGCGGTACAGGAGAATTTGTACTTGGAGGAGGAGGATGATCTTGACGAC
CTAGACGATGACGATGATGAGGAGGAGGAAGCTGAGAGGCAGGATGGGGG
GAGTGCTGGGGAAGGAGGGGGGAAGAGGGGTTGA

Synonyms

Publications