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Properties
| Property Name | Value |
|---|
| TranscriptId | 611240 |
| Track | FilteredModels2 |
| ProteinId | 611154 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_54 | supercontig | scaffold_54:76084..78277 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10354 ID=mRNA_10354|Name=jgi.p|Nanoce1779_2|611154|organism=Nannochloropsis oceanica|type=mRNA|length=1330bp
AGGATAACGATCTGCACCTTCTCCACGATGGCGCCGTCGCAGTGGCGGAG
GGAAAATTTCCGCGGGCCCAGCGCCAACACCACCATGCCTCTTCTCCTTC
TGCTTCCCTCTCTCTTTCTCCTTGTCTGCCTGCCCTCCCCCCTGCACGCC
TTGGACTTCCAGGACATCCGCGACGGCTTCTCAGGGGCATCGGATGACAT
TAGAAAGGGCATGAATGGGCTGCGGTTGCCGGGCATGTGCGCCTACTACG
ACCCCATCGAGGATCGTTGCCACGTCAACAGCAACAATGGCGTCCGCACT
GAGGTGGCTGGCAGGTGTGGCGACAACATGAAAGACATCATCCCCACCTG
TCGCGGACACCCTGACGCCTATATGCCACAACCCCAAGTGCCTACTACGC
CCGCAAAGCCTTTGCCGGTACCACCTAAGACGCCTGTGGAAGTGAAGCCA
GATGGAGAGATCCCGGGCTCTCCAACGCCGTTGTTGCCGCCGCCTCCGCA
GAAACCGACGTCGGAACGTCCTGTCCGAGCACCCACCGGCAAGCAGGGCA
CTCAGAACCCTCCTCGCTGGCCTCCCTTGTCAGGAAAAGACAGCGGAGAG
CCCGTGGCGGACGTGGTAGAGGAGGAGAAGGAGAGAAGGAGGAGAGGCTT
GAAAGGATTCGCTCTCTTCGGCGTTCTCATTGGAACGGCCATCTGTGTGG
CGATTCTCTCCGTGTTGGGCGTGGGGTATTACGCGTATCGCACCAGGCAG
AAGACTATGCGACTGCGAGAGCAAGTCCTTACAGCTCGTGAGGCTCGGGC
GCATGTCACATTCGCCGGCATATCTCCCTCGTTGCCATCAGTCCCGACGC
CTCGCTCCTTAGGATTGTAAATTAGACCGAGGAATGTAAATAATTGAGTG
AGAGGACAGTGATGCAAGAGGGAAAAAACTAACTAAAACGACCAGAGAAA
ATAAAGAGGTAGAGCACTTACTGTCGCATTCTCTTTCCTTTGCCGCCGCT
TGCTTCCCCTTGTGCTGTTCTTCGAGCTGTACCGCCACATCGTCCAGACC
GGCAGTGTACTATGATAAGGGACGTGATCTTGATCCCACCCTCTGTGCTG
GCGCCCTGCTTCACGGTATTATCTCGATTCATGTAAGGTGGGTAGTGGAG
AGGAAGGCAGCAAGGGAGCATATATGCAAGTTATATCCTGTTTTCTTCGT
CGTTTCGCTGTTCATCACTTATTAGCATTTATTATTTCTTTCTCCTTTGT
AATCATTCAGTGGTCATTTCACTCCTCTCTCATCGCCTTCATCTCCTCAC
AGTGATGTACCTCATTCTGTTCTATACACA back to topprotein sequence of jgi.p|Nanoce1779_2|611154 >mRNA_10354-protein ID=mRNA_10354-protein|Name=jgi.p|Nanoce1779_2|611154|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MAPSQWRRENFRGPSANTTMPLLLLLPSLFLLVCLPSPLHALDFQDIRDG
FSGASDDIRKGMNGLRLPGMCAYYDPIEDRCHVNSNNGVRTEVAGRCGDN
MKDIIPTCRGHPDAYMPQPQVPTTPAKPLPVPPKTPVEVKPDGEIPGSPT
PLLPPPPQKPTSERPVRAPTGKQGTQNPPRWPPLSGKDSGEPVADVVEEE
KERRRRGLKGFALFGVLIGTAICVAILSVLGVGYYAYRTRQKTMRLREQV
LTAREARAHVTFAGISPSLPSVPTPRSLGL* back to topmRNA from alignment at scaffold_54:76084..78277- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10354 ID=mRNA_10354|Name=jgi.p|Nanoce1779_2|611154|organism=Nannochloropsis oceanica|type=mRNA|length=2194bp|location=Sequence derived from alignment at scaffold_54:76084..78277- (Nannochloropsis oceanica)
AGGATAACGATCTGCACCTTCTCCACGATGGCGCCGTCGCAGTGGCGGAG
GGAAAATTTCCGCGGGCCCAGCGCCAACACCACCATGCCTCTTCTCCTTC
TGCTTCCCTCTCTCTTTCTCCTTGTCTGCCTGCCCTCCCCCCTGCACGCC
TTGGACTTCCAGGACATCCGCGACGGCTTCTCAGGGGCATCGGATGACAT
TAGAAAGGGCATGAATGGGCTGCGGTTGCCGGGCATGTGCGCGTACGTCC
GTCTTTTTCTCTGCATGTTTTCCCACTTCGCCTTCTCACGTTTCTCCTTC
CCTGGTCATGGTTCCATGAGTCCATGTCTCATGTCCCACTTTCTCTCAAA
TTTCATGTATGGGTATGCCCATATATCAATACATTTTATAAGCACAGAAA
TATATGTACGGATTCTGGCATCCAGCATGTGTGAATATACGTGTACCTTC
CCCTGTCCTTTTGTCATCCTTCGAGCCCTTTCATCCACTCCCTTTCATCT
CATGCTCAGTCACTACCTATCAACCCTACCTTCCCTCCTTGTACTCCTGC
CTCATCAGCTACTACGACCCCATCGAGGATCGTTGCCACGTCAACAGCAA
CAATGGCGTCCGCACTGAGGTGGCTGGCAGGTGTGGCGACAACATGAAAG
ACATCATCCCCACCTGTCGCGGACACCCTGACGCCTATATGCCACAACCC
CAAGTGCCTACTACGCCCGCAAAGCCTTTGCCGGTACCACCTAAGACGCC
TGTGGAAGTGAAGCCAGATGGAGAGATCCCGGGCTCTCCAACGCCGTTGT
TGCCGCCGCCTCCGCAGGTACGCCCCTGTTGATGTGTCTCATGTGATAAG
CCTTTGCCGCTATTCCCATTAATGCATCTTTTTGATAAAATTAAATCCTT
TTCCCCTTTCTCGTTCAACGAATCTGTTCCTTTTGGTTGTCCCTTGGTGT
TGTCTGCCTTGAATATATTTATTTACCTTCCTTTCCCCAACCCCCTTAAA
TCTGCCACCTCCTTTACCCTCTTCACATCTAACCCACCCCCGACCATTAT
CCCTTCACGGACACAGAAACCGACGTCGGAACGTCCTGTCCGAGCACCCA
CCGGCAAGCAGGGCACTCAGAACCCTCCTCGCTGGCCTCCCTTGTCAGGA
AAAGACAGCGGAGAGCCCGTGGCGGACGTGGTAGAGGAGGAGAAGGAGAG
AAGGAGGAGAGGCTTGAAAGGATTCGCTCTCTTCGGCGTTCTCATTGGAA
CGGCCATCTGTGTGGCGATTCTCTCCGTGTTGGGCGTGGGGTATTACGCG
TATCGCACCAGGCAGAAGACTATGCGACTGCGAGGTAGGTCGAGGGGGGC
GATGAGCGGTTGAGAGGAGAAGGCGGCAGCCGCATGCGTGTGTGAATGGG
CGGCACTTCTTTTTTCTCAAAATTTTGGGAGTGCATTACGCGACATGCGA
GGCTGGACCCGCGTTTAATGTCAACGTTGCGGGCTAACATGTCATTGGCG
GAAGACTGGTTGCGAACACATTCGTGACGCAGATGGATGATCCTTCCTTT
GTCCTTCTCTCTCCTCTCATCCCTACCCCCTTCGTTTCTCTATTCCCCGC
TCCCATATCACATCTCTTTATTCCCCTTAACAGAGCAAGTCCTTACAGCT
CGTGAGGCTCGGGCGCATGTCACATTCGCCGGCATATCTCCCTCGTTGCC
ATCAGTCCCGACGCCTCGCTCCTTAGGATTGTAAATTAGACCGAGGAATG
TAAATAATTGAGTGAGAGGACAGTGATGCAAGAGGGAAAAAACTAACTAA
AACGACCAGAGAAAATAAAGAGGTAGAGCACTTACTGTCGCATTCTCTTT
CCTTTGCCGCCGCTTGCTTCCCCTTGTGCTGTTCTTCGAGCTGTACCGCC
ACATCGTCCAGACCGGCAGTGTACTATGATAAGGGACGTGATCTTGATCC
CACCCTCTGTGCTGGCGCCCTGCTTCACGGTATTATCTCGATTCATGTAA
GGTGGGTAGTGGAGAGGAAGGCAGCAAGGGAGCATATATGCAAGTTATAT
CCTGTTTTCTTCGTCGTTTCGCTGTTCATCACTTATTAGCATTTATTATT
TCTTTCTCCTTTGTAATCATTCAGTGGTCATTTCACTCCTCTCTCATCGC
CTTCATCTCCTCACAGTGATGTACCTCATTCTGTTCTATACACA back to topCoding sequence (CDS) from alignment at scaffold_54:76084..78277- >mRNA_10354 ID=mRNA_10354|Name=jgi.p|Nanoce1779_2|611154|organism=Nannochloropsis oceanica|type=CDS|length=3372bp|location=Sequence derived from alignment at scaffold_54:76084..78277- (Nannochloropsis oceanica)
AGCAAGTCCTTACAGCTCGTGAGGCTCGGGCGCATGTCACATTCGCCGGC
ATATCTCCCTCGTTGCCATCAGTCCCGACGCCTCGCTCCTTAGGATTGTA
AAAACCGACGTCGGAACGTCCTGTCCGAGCACCCACCGGCAAGCAGGGCA
CTCAGAACCCTCCTCGCTGGCCTCCCTTGTCAGGAAAAGACAGCGGAGAG
CCCGTGGCGGACGTGGTAGAGGAGGAGAAGGAGAGAAGGAGGAGAGGCTT
GAAAGGATTCGCTCTCTTCGGCGTTCTCATTGGAACGGCCATCTGTGTGG
CGATTCTCTCCGTGTTGGGCGTGGGGTATTACGCGTATCGCACCAGGCAG
AAGACTATGCGACTGCGAGCTACTACGACCCCATCGAGGATCGTTGCCAC
GTCAACAGCAACAATGGCGTCCGCACTGAGGTGGCTGGCAGGTGTGGCGA
CAACATGAAAGACATCATCCCCACCTGTCGCGGACACCCTGACGCCTATA
TGCCACAACCCCAAGTGCCTACTACGCCCGCAAAGCCTTTGCCGGTACCA
CCTAAGACGCCTGTGGAAGTGAAGCCAGATGGAGAGATCCCGGGCTCTCC
AACGCCGTTGTTGCCGCCGCCTCCGCAGATGGCGCCGTCGCAGTGGCGGA
GGGAAAATTTCCGCGGGCCCAGCGCCAACACCACCATGCCTCTTCTCCTT
CTGCTTCCCTCTCTCTTTCTCCTTGTCTGCCTGCCCTCCCCCCTGCACGC
CTTGGACTTCCAGGACATCCGCGACGGCTTCTCAGGGGCATCGGATGACA
TTAGAAAGGGCATGAATGGGCTGCGGTTGCCGGGCATGTGCGCAGCAAGT
CCTTACAGCTCGTGAGGCTCGGGCGCATGTCACATTCGCCGGCATATCTC
CCTCGTTGCCATCAGTCCCGACGCCTCGCTCCTTAGGATTGTAAAAACCG
ACGTCGGAACGTCCTGTCCGAGCACCCACCGGCAAGCAGGGCACTCAGAA
CCCTCCTCGCTGGCCTCCCTTGTCAGGAAAAGACAGCGGAGAGCCCGTGG
CGGACGTGGTAGAGGAGGAGAAGGAGAGAAGGAGGAGAGGCTTGAAAGGA
TTCGCTCTCTTCGGCGTTCTCATTGGAACGGCCATCTGTGTGGCGATTCT
CTCCGTGTTGGGCGTGGGGTATTACGCGTATCGCACCAGGCAGAAGACTA
TGCGACTGCGAGCTACTACGACCCCATCGAGGATCGTTGCCACGTCAACA
GCAACAATGGCGTCCGCACTGAGGTGGCTGGCAGGTGTGGCGACAACATG
AAAGACATCATCCCCACCTGTCGCGGACACCCTGACGCCTATATGCCACA
ACCCCAAGTGCCTACTACGCCCGCAAAGCCTTTGCCGGTACCACCTAAGA
CGCCTGTGGAAGTGAAGCCAGATGGAGAGATCCCGGGCTCTCCAACGCCG
TTGTTGCCGCCGCCTCCGCAGATGGCGCCGTCGCAGTGGCGGAGGGAAAA
TTTCCGCGGGCCCAGCGCCAACACCACCATGCCTCTTCTCCTTCTGCTTC
CCTCTCTCTTTCTCCTTGTCTGCCTGCCCTCCCCCCTGCACGCCTTGGAC
TTCCAGGACATCCGCGACGGCTTCTCAGGGGCATCGGATGACATTAGAAA
GGGCATGAATGGGCTGCGGTTGCCGGGCATGTGCGCAGCAAGTCCTTACA
GCTCGTGAGGCTCGGGCGCATGTCACATTCGCCGGCATATCTCCCTCGTT
GCCATCAGTCCCGACGCCTCGCTCCTTAGGATTGTAAAAACCGACGTCGG
AACGTCCTGTCCGAGCACCCACCGGCAAGCAGGGCACTCAGAACCCTCCT
CGCTGGCCTCCCTTGTCAGGAAAAGACAGCGGAGAGCCCGTGGCGGACGT
GGTAGAGGAGGAGAAGGAGAGAAGGAGGAGAGGCTTGAAAGGATTCGCTC
TCTTCGGCGTTCTCATTGGAACGGCCATCTGTGTGGCGATTCTCTCCGTG
TTGGGCGTGGGGTATTACGCGTATCGCACCAGGCAGAAGACTATGCGACT
GCGAGCTACTACGACCCCATCGAGGATCGTTGCCACGTCAACAGCAACAA
TGGCGTCCGCACTGAGGTGGCTGGCAGGTGTGGCGACAACATGAAAGACA
TCATCCCCACCTGTCGCGGACACCCTGACGCCTATATGCCACAACCCCAA
GTGCCTACTACGCCCGCAAAGCCTTTGCCGGTACCACCTAAGACGCCTGT
GGAAGTGAAGCCAGATGGAGAGATCCCGGGCTCTCCAACGCCGTTGTTGC
CGCCGCCTCCGCAGATGGCGCCGTCGCAGTGGCGGAGGGAAAATTTCCGC
GGGCCCAGCGCCAACACCACCATGCCTCTTCTCCTTCTGCTTCCCTCTCT
CTTTCTCCTTGTCTGCCTGCCCTCCCCCCTGCACGCCTTGGACTTCCAGG
ACATCCGCGACGGCTTCTCAGGGGCATCGGATGACATTAGAAAGGGCATG
AATGGGCTGCGGTTGCCGGGCATGTGCGCAGCAAGTCCTTACAGCTCGTG
AGGCTCGGGCGCATGTCACATTCGCCGGCATATCTCCCTCGTTGCCATCA
GTCCCGACGCCTCGCTCCTTAGGATTGTAAAAACCGACGTCGGAACGTCC
TGTCCGAGCACCCACCGGCAAGCAGGGCACTCAGAACCCTCCTCGCTGGC
CTCCCTTGTCAGGAAAAGACAGCGGAGAGCCCGTGGCGGACGTGGTAGAG
GAGGAGAAGGAGAGAAGGAGGAGAGGCTTGAAAGGATTCGCTCTCTTCGG
CGTTCTCATTGGAACGGCCATCTGTGTGGCGATTCTCTCCGTGTTGGGCG
TGGGGTATTACGCGTATCGCACCAGGCAGAAGACTATGCGACTGCGAGCT
ACTACGACCCCATCGAGGATCGTTGCCACGTCAACAGCAACAATGGCGTC
CGCACTGAGGTGGCTGGCAGGTGTGGCGACAACATGAAAGACATCATCCC
CACCTGTCGCGGACACCCTGACGCCTATATGCCACAACCCCAAGTGCCTA
CTACGCCCGCAAAGCCTTTGCCGGTACCACCTAAGACGCCTGTGGAAGTG
AAGCCAGATGGAGAGATCCCGGGCTCTCCAACGCCGTTGTTGCCGCCGCC
TCCGCAGATGGCGCCGTCGCAGTGGCGGAGGGAAAATTTCCGCGGGCCCA
GCGCCAACACCACCATGCCTCTTCTCCTTCTGCTTCCCTCTCTCTTTCTC
CTTGTCTGCCTGCCCTCCCCCCTGCACGCCTTGGACTTCCAGGACATCCG
CGACGGCTTCTCAGGGGCATCGGATGACATTAGAAAGGGCATGAATGGGC
TGCGGTTGCCGGGCATGTGCGC back to top
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