jgi.p|Nanoce1779_2|533979, mRNA_10348 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|533979
Unique NamemRNA_10348
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length792
Alignment locationscaffold_54:54930..56072 -

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Properties
Property NameValue
TranscriptId534065
TrackFilteredModels2
ProteinId533979
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_54supercontigscaffold_54:54930..56072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533979gene_10348Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533979mRNA_10348-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10348CDS_10348Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10348 ID=mRNA_10348|Name=jgi.p|Nanoce1779_2|533979|organism=Nannochloropsis oceanica|type=mRNA|length=792bp
ATGTGCAGATCACCACAGGCATCATCATTAGCATTAGCTGCAGGGGTAGC
GGGACGTTCCTGCCGCGCCGCCTTTAACACCCAGTCCTCCTCCTCCAGCT
CCTCCCTGAGTCTCAATAATCTCAGTGACAACCCAGGGGCCAAGACTGAG
CGCACACGTGTAGGTCGGGGTTGCGGTTCAGGAAAGGGCAAAACGGCTGG
GCGGGGAATGAATGGACAAAAGAAGCGATCAAGCGTGAACATTCCTCAAG
GCTTCGAAGGCGGGCAAACCCCCTTACACCGCCGCCTACCCAAGACAGGA
TTTAAAAACATCTGGGCTGAGCCCCTCACACCTCTTCACGTCGGCGAGCT
CCAAAACTGGGTAGATATGGGCCGTCTCTCCGTCCCTCCCAACCGTCTGG
TGACGATGAAGGACCTCGTTGACGCCGGCCTTTTCAAGGCGAACAAGATC
AAGCACGGGATAAAGCTCCTGGCCCGCGGTGGGGAACACGTTCATACCCC
GATCCACCTAGAAGTCTCTCGGGCGTCTGCTGCGGCGATCGAGGCCGTGG
AAAAAGTGGGAGGGACGATAACGTGCGTGCATTTCAATCGGTTGGCCCTC
CGTGCGCTCTTGAAGCCAGAAGCATTTGTGGTGCCGCTGCCTCGACGGGC
AAGGCCGCCTCCGAAGCTGATGCCACTGTATTTGGACTCTGATCGAAGGG
GTTATTTGTCTCCGGAGGTGCAGATGAGAAATAGGACGCTGTTTGGGGGA
CAGGTGACAAGCGAGAGGGTGCCGGAGTTGGCGCATGAGTAG
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protein sequence of jgi.p|Nanoce1779_2|533979

>mRNA_10348-protein ID=mRNA_10348-protein|Name=jgi.p|Nanoce1779_2|533979|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MCRSPQASSLALAAGVAGRSCRAAFNTQSSSSSSSLSLNNLSDNPGAKTE
RTRVGRGCGSGKGKTAGRGMNGQKKRSSVNIPQGFEGGQTPLHRRLPKTG
FKNIWAEPLTPLHVGELQNWVDMGRLSVPPNRLVTMKDLVDAGLFKANKI
KHGIKLLARGGEHVHTPIHLEVSRASAAAIEAVEKVGGTITCVHFNRLAL
RALLKPEAFVVPLPRRARPPPKLMPLYLDSDRRGYLSPEVQMRNRTLFGG
QVTSERVPELAHE*
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mRNA from alignment at scaffold_54:54930..56072-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10348 ID=mRNA_10348|Name=jgi.p|Nanoce1779_2|533979|organism=Nannochloropsis oceanica|type=mRNA|length=1143bp|location=Sequence derived from alignment at scaffold_54:54930..56072- (Nannochloropsis oceanica)
ATGTGCAGATCACCACAGGCATCATCATTAGCATTAGCTGCAGGGGTAGC
GGGACGTTCCTGCCGCGCCGCCTTTAACACCCAGTCCTCCTCCTCCAGCT
CCTCCCTGAGTCTCAATAATCTCAGTGACAACCCAGGGGCCAAGACTGAG
GTAGGTGGGGTGTGGTATGTATGTGTGTGGAGAGCCGCTAAGCGACTTCC
CGTCAGCGTCGTTGCCACCATCTCCATACGCAGGACGCTCACTCTTCTTC
CTATCTTCCACTCCTATCATATACCTCCATCCGTGCTCTCTGTAAAATTA
GCGCACACGTGTAGGTCGGGGTTGCGGTTCAGGAAAGGGCAAAACGGCTG
GGCGGGGAATGAATGGACAAAAGAAGCGATCAAGCGTGAACATTCCTCAA
GGCTTCGAAGGCGGGCAAACCCCCTTACACCGCCGCCTACCCAAGACAGG
ATTTAAAAACATGTACGCTTTTTTGGTTCTCGTCATAAGTCTTGATTGTC
GCTTCGTAAAGATCTCGCTGCATAACGTGATGCACGTGGAGATTGTGCTA
TGCACCTCCTCTTTCGATCACCCATCTTCGTCCTTTCACTCACTTCCATC
TCCCAAAACTCAACACTCAACAGCTGGGCTGAGCCCCTCACACCTCTTCA
CGTCGGCGAGCTCCAAAACTGGGTAGATATGGGCCGTCTCTCCGTCCCTC
CCAACCGTCTGGTGACGATGAAGGACCTCGTTGACGCCGGCCTTTTCAAG
GCGAACAAGATCAAGCACGGGATAAAGCTCCTGGCCCGCGGTGGGGAACA
CGTTCATACCCCGATCCACCTAGAAGTCTCTCGGGCGTCTGCTGCGGCGA
TCGAGGCCGTGGAAAAAGTGGGAGGGACGATAACGTGCGTGCATTTCAAT
CGGTTGGCCCTCCGTGCGCTCTTGAAGCCAGAAGCATTTGTGGTGCCGGT
ATTGGGAGAGGGAGGGGAGGTAGAGGAGAGGCTGCAGCTGCCTCGACGGG
CAAGGCCGCCTCCGAAGCTGATGCCACTGTATTTGGACTCTGATCGAAGG
GGTTATTTGTCTCCGGAGGTGCAGATGAGAAATAGGACGCTGTTTGGGGG
ACAGGTGACAAGCGAGAGGGTGCCGGAGTTGGCGCATGAGTAG
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Coding sequence (CDS) from alignment at scaffold_54:54930..56072-

>mRNA_10348 ID=mRNA_10348|Name=jgi.p|Nanoce1779_2|533979|organism=Nannochloropsis oceanica|type=CDS|length=3168bp|location=Sequence derived from alignment at scaffold_54:54930..56072- (Nannochloropsis oceanica)
CTGCCTCGACGGGCAAGGCCGCCTCCGAAGCTGATGCCACTGTATTTGGA
CTCTGATCGAAGGGGTTATTTGTCTCCGGAGGTGCAGATGAGAAATAGGA
CGCTGTTTGGGGGACAGGTGACAAGCGAGAGGGTGCCGGAGTTGGCGCAT
GAGTAGCTGGGCTGAGCCCCTCACACCTCTTCACGTCGGCGAGCTCCAAA
ACTGGGTAGATATGGGCCGTCTCTCCGTCCCTCCCAACCGTCTGGTGACG
ATGAAGGACCTCGTTGACGCCGGCCTTTTCAAGGCGAACAAGATCAAGCA
CGGGATAAAGCTCCTGGCCCGCGGTGGGGAACACGTTCATACCCCGATCC
ACCTAGAAGTCTCTCGGGCGTCTGCTGCGGCGATCGAGGCCGTGGAAAAA
GTGGGAGGGACGATAACGTGCGTGCATTTCAATCGGTTGGCCCTCCGTGC
GCTCTTGAAGCCAGAAGCATTTGTGGTGCCGCGCACACGTGTAGGTCGGG
GTTGCGGTTCAGGAAAGGGCAAAACGGCTGGGCGGGGAATGAATGGACAA
AAGAAGCGATCAAGCGTGAACATTCCTCAAGGCTTCGAAGGCGGGCAAAC
CCCCTTACACCGCCGCCTACCCAAGACAGGATTTAAAAACATATGTGCAG
ATCACCACAGGCATCATCATTAGCATTAGCTGCAGGGGTAGCGGGACGTT
CCTGCCGCGCCGCCTTTAACACCCAGTCCTCCTCCTCCAGCTCCTCCCTG
AGTCTCAATAATCTCAGTGACAACCCAGGGGCCAAGACTGAGCTGCCTCG
ACGGGCAAGGCCGCCTCCGAAGCTGATGCCACTGTATTTGGACTCTGATC
GAAGGGGTTATTTGTCTCCGGAGGTGCAGATGAGAAATAGGACGCTGTTT
GGGGGACAGGTGACAAGCGAGAGGGTGCCGGAGTTGGCGCATGAGTAGCT
GGGCTGAGCCCCTCACACCTCTTCACGTCGGCGAGCTCCAAAACTGGGTA
GATATGGGCCGTCTCTCCGTCCCTCCCAACCGTCTGGTGACGATGAAGGA
CCTCGTTGACGCCGGCCTTTTCAAGGCGAACAAGATCAAGCACGGGATAA
AGCTCCTGGCCCGCGGTGGGGAACACGTTCATACCCCGATCCACCTAGAA
GTCTCTCGGGCGTCTGCTGCGGCGATCGAGGCCGTGGAAAAAGTGGGAGG
GACGATAACGTGCGTGCATTTCAATCGGTTGGCCCTCCGTGCGCTCTTGA
AGCCAGAAGCATTTGTGGTGCCGCGCACACGTGTAGGTCGGGGTTGCGGT
TCAGGAAAGGGCAAAACGGCTGGGCGGGGAATGAATGGACAAAAGAAGCG
ATCAAGCGTGAACATTCCTCAAGGCTTCGAAGGCGGGCAAACCCCCTTAC
ACCGCCGCCTACCCAAGACAGGATTTAAAAACATATGTGCAGATCACCAC
AGGCATCATCATTAGCATTAGCTGCAGGGGTAGCGGGACGTTCCTGCCGC
GCCGCCTTTAACACCCAGTCCTCCTCCTCCAGCTCCTCCCTGAGTCTCAA
TAATCTCAGTGACAACCCAGGGGCCAAGACTGAGCTGCCTCGACGGGCAA
GGCCGCCTCCGAAGCTGATGCCACTGTATTTGGACTCTGATCGAAGGGGT
TATTTGTCTCCGGAGGTGCAGATGAGAAATAGGACGCTGTTTGGGGGACA
GGTGACAAGCGAGAGGGTGCCGGAGTTGGCGCATGAGTAGCTGGGCTGAG
CCCCTCACACCTCTTCACGTCGGCGAGCTCCAAAACTGGGTAGATATGGG
CCGTCTCTCCGTCCCTCCCAACCGTCTGGTGACGATGAAGGACCTCGTTG
ACGCCGGCCTTTTCAAGGCGAACAAGATCAAGCACGGGATAAAGCTCCTG
GCCCGCGGTGGGGAACACGTTCATACCCCGATCCACCTAGAAGTCTCTCG
GGCGTCTGCTGCGGCGATCGAGGCCGTGGAAAAAGTGGGAGGGACGATAA
CGTGCGTGCATTTCAATCGGTTGGCCCTCCGTGCGCTCTTGAAGCCAGAA
GCATTTGTGGTGCCGCGCACACGTGTAGGTCGGGGTTGCGGTTCAGGAAA
GGGCAAAACGGCTGGGCGGGGAATGAATGGACAAAAGAAGCGATCAAGCG
TGAACATTCCTCAAGGCTTCGAAGGCGGGCAAACCCCCTTACACCGCCGC
CTACCCAAGACAGGATTTAAAAACATATGTGCAGATCACCACAGGCATCA
TCATTAGCATTAGCTGCAGGGGTAGCGGGACGTTCCTGCCGCGCCGCCTT
TAACACCCAGTCCTCCTCCTCCAGCTCCTCCCTGAGTCTCAATAATCTCA
GTGACAACCCAGGGGCCAAGACTGAGCTGCCTCGACGGGCAAGGCCGCCT
CCGAAGCTGATGCCACTGTATTTGGACTCTGATCGAAGGGGTTATTTGTC
TCCGGAGGTGCAGATGAGAAATAGGACGCTGTTTGGGGGACAGGTGACAA
GCGAGAGGGTGCCGGAGTTGGCGCATGAGTAGCTGGGCTGAGCCCCTCAC
ACCTCTTCACGTCGGCGAGCTCCAAAACTGGGTAGATATGGGCCGTCTCT
CCGTCCCTCCCAACCGTCTGGTGACGATGAAGGACCTCGTTGACGCCGGC
CTTTTCAAGGCGAACAAGATCAAGCACGGGATAAAGCTCCTGGCCCGCGG
TGGGGAACACGTTCATACCCCGATCCACCTAGAAGTCTCTCGGGCGTCTG
CTGCGGCGATCGAGGCCGTGGAAAAAGTGGGAGGGACGATAACGTGCGTG
CATTTCAATCGGTTGGCCCTCCGTGCGCTCTTGAAGCCAGAAGCATTTGT
GGTGCCGCGCACACGTGTAGGTCGGGGTTGCGGTTCAGGAAAGGGCAAAA
CGGCTGGGCGGGGAATGAATGGACAAAAGAAGCGATCAAGCGTGAACATT
CCTCAAGGCTTCGAAGGCGGGCAAACCCCCTTACACCGCCGCCTACCCAA
GACAGGATTTAAAAACATATGTGCAGATCACCACAGGCATCATCATTAGC
ATTAGCTGCAGGGGTAGCGGGACGTTCCTGCCGCGCCGCCTTTAACACCC
AGTCCTCCTCCTCCAGCTCCTCCCTGAGTCTCAATAATCTCAGTGACAAC
CCAGGGGCCAAGACTGAG
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Synonyms
Publications