jgi.p|Nanoce1779_2|611116, mRNA_10346 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611116
Unique NamemRNA_10346
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1441
Alignment locationscaffold_54:47503..48943 -

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Properties
Property NameValue
TranscriptId611202
TrackFilteredModels2
ProteinId611116
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_54supercontigscaffold_54:47503..48943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611116gene_10346Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611116mRNA_10346-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10346CDS_10346Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10346 ID=mRNA_10346|Name=jgi.p|Nanoce1779_2|611116|organism=Nannochloropsis oceanica|type=mRNA|length=1441bp
AGGATTAGCACTGCTGTGTAGAACACATACAGCAAGCCTGAGGACAGCAG
CCACATGGATAGACTGACACGTCGGGCAGGGGTCAAGGCCCCGATGACAT
CCTCCTCTTCCTCCTCCTGCTCCTCCTCCGCCTTTTCCTCCTACTCTTCC
CTCTCCTCCCCCTTCAATGCAGCCTGGTTCTCGGACAAGTCGTGGCCCAT
GCCACCACAAAGTCGATCCAAGGCGGTTTGGATCAGCTTGATTTTGTCTT
CCTTTGGCATATTTCTGGTACTTACTTTCAGCAGCAGAGACACGCGCTCT
GATTCCTCTTCTTTCACCGGCATAATCCAATCGCTGCAGCAGCTCATGAT
GTCCGTGCCCCCGAACCACTGGAGCAACCTACCCCACAAGCGGCTGCTAG
TCACGCAGTTTGCCTCAGGGGATCGGGCCCAACAATTTAATAAGAATTGG
CGCAACCACGAGGAGAAATTTATGAAGCAGCAACAGGACGCTTCTCTTCT
CCTGGCCTGCCCGGCCGACGACCGACAAACGCTTATGGATCAAGTGGTGC
TACACAATAATTGGACGCTGGTAGGGAGCTGGGACCACGCCCATTCTTTT
GCCCATGGACCTTTGCTGCAATATCGAACTCCGGGGGAAGGCATTGACGT
GTTTTTCCAACCGATGAATTTGAGTTTTCCTAAATATTATGAGGAGAGTG
ACCCTAAGCCCATCCCTACCTGTGCGAAGGGGCGGCATTTCAGTTGGCAG
TACGCCTTGTACAGTGGGGCTGTCTTCGCGTATCAAATGATTCACCTGCC
ATTCTTAGACAGATACGATTATTTTATGAAAATTGACGGAGATTTGACTT
TTGGCGACTCTTTCCCCCTTGATATTGGAGCAGACATGGAGCAACGAGGG
TGTGTGGTAGGCCACGCGGCCATTCACGGCTCAGGGGATTGCGAAGCACG
GAATTTAGAGGCGTTGCTGGCGGCGGATGAGGCGTTGGGGTGGCCGAAAC
CCAAGAGTTTGGCCTACCATTGGTGCAATGAAGATGGGAAGGGAGAGAAA
GGCAACTTAATGTTCTTTGGAAACTTCGCGGTATATCGGACGAAGGGCTT
TCTACTATCTCCGGAGATTCAAAGTATCAGCAGGTACATGTATGAGGAGT
GGAGGGATGGTTATTACACGCATCGATGGGGAGATCAAGGCCCCTTTGTA
ATGTTTGCTTGCCAGATGCTGGATGTGCCGGACTTGGAGAAGGATGCAAA
GATCTGCTCGTATGCCGAGCTAAGGGAGAGTAAAATGATTGTGCATTAAG
GAGAAGGCAGGGAGAGATGGGGGGAATAGAGGGGGTAATGGCATGTAGAG
ACGCTGCGCAGACAAAGAGGGGGTTGACGTGGTTGCGCACATTTACACAC
ATATATTTCATACGGCGACAAGGAAGAAATAAATAGCTGCC
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protein sequence of jgi.p|Nanoce1779_2|611116

>mRNA_10346-protein ID=mRNA_10346-protein|Name=jgi.p|Nanoce1779_2|611116|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MDRLTRRAGVKAPMTSSSSSSCSSSAFSSYSSLSSPFNAAWFSDKSWPMP
PQSRSKAVWISLILSSFGIFLVLTFSSRDTRSDSSSFTGIIQSLQQLMMS
VPPNHWSNLPHKRLLVTQFASGDRAQQFNKNWRNHEEKFMKQQQDASLLL
ACPADDRQTLMDQVVLHNNWTLVGSWDHAHSFAHGPLLQYRTPGEGIDVF
FQPMNLSFPKYYEESDPKPIPTCAKGRHFSWQYALYSGAVFAYQMIHLPF
LDRYDYFMKIDGDLTFGDSFPLDIGADMEQRGCVVGHAAIHGSGDCEARN
LEALLAADEALGWPKPKSLAYHWCNEDGKGEKGNLMFFGNFAVYRTKGFL
LSPEIQSISRYMYEEWRDGYYTHRWGDQGPFVMFACQMLDVPDLEKDAKI
CSYAELRESKMIVH*
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mRNA from alignment at scaffold_54:47503..48943-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10346 ID=mRNA_10346|Name=jgi.p|Nanoce1779_2|611116|organism=Nannochloropsis oceanica|type=mRNA|length=1441bp|location=Sequence derived from alignment at scaffold_54:47503..48943- (Nannochloropsis oceanica)
AGGATTAGCACTGCTGTGTAGAACACATACAGCAAGCCTGAGGACAGCAG
CCACATGGATAGACTGACACGTCGGGCAGGGGTCAAGGCCCCGATGACAT
CCTCCTCTTCCTCCTCCTGCTCCTCCTCCGCCTTTTCCTCCTACTCTTCC
CTCTCCTCCCCCTTCAATGCAGCCTGGTTCTCGGACAAGTCGTGGCCCAT
GCCACCACAAAGTCGATCCAAGGCGGTTTGGATCAGCTTGATTTTGTCTT
CCTTTGGCATATTTCTGGTACTTACTTTCAGCAGCAGAGACACGCGCTCT
GATTCCTCTTCTTTCACCGGCATAATCCAATCGCTGCAGCAGCTCATGAT
GTCCGTGCCCCCGAACCACTGGAGCAACCTACCCCACAAGCGGCTGCTAG
TCACGCAGTTTGCCTCAGGGGATCGGGCCCAACAATTTAATAAGAATTGG
CGCAACCACGAGGAGAAATTTATGAAGCAGCAACAGGACGCTTCTCTTCT
CCTGGCCTGCCCGGCCGACGACCGACAAACGCTTATGGATCAAGTGGTGC
TACACAATAATTGGACGCTGGTAGGGAGCTGGGACCACGCCCATTCTTTT
GCCCATGGACCTTTGCTGCAATATCGAACTCCGGGGGAAGGCATTGACGT
GTTTTTCCAACCGATGAATTTGAGTTTTCCTAAATATTATGAGGAGAGTG
ACCCTAAGCCCATCCCTACCTGTGCGAAGGGGCGGCATTTCAGTTGGCAG
TACGCCTTGTACAGTGGGGCTGTCTTCGCGTATCAAATGATTCACCTGCC
ATTCTTAGACAGATACGATTATTTTATGAAAATTGACGGAGATTTGACTT
TTGGCGACTCTTTCCCCCTTGATATTGGAGCAGACATGGAGCAACGAGGG
TGTGTGGTAGGCCACGCGGCCATTCACGGCTCAGGGGATTGCGAAGCACG
GAATTTAGAGGCGTTGCTGGCGGCGGATGAGGCGTTGGGGTGGCCGAAAC
CCAAGAGTTTGGCCTACCATTGGTGCAATGAAGATGGGAAGGGAGAGAAA
GGCAACTTAATGTTCTTTGGAAACTTCGCGGTATATCGGACGAAGGGCTT
TCTACTATCTCCGGAGATTCAAAGTATCAGCAGGTACATGTATGAGGAGT
GGAGGGATGGTTATTACACGCATCGATGGGGAGATCAAGGCCCCTTTGTA
ATGTTTGCTTGCCAGATGCTGGATGTGCCGGACTTGGAGAAGGATGCAAA
GATCTGCTCGTATGCCGAGCTAAGGGAGAGTAAAATGATTGTGCATTAAG
GAGAAGGCAGGGAGAGATGGGGGGAATAGAGGGGGTAATGGCATGTAGAG
ACGCTGCGCAGACAAAGAGGGGGTTGACGTGGTTGCGCACATTTACACAC
ATATATTTCATACGGCGACAAGGAAGAAATAAATAGCTGCC
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Coding sequence (CDS) from alignment at scaffold_54:47503..48943-

>mRNA_10346 ID=mRNA_10346|Name=jgi.p|Nanoce1779_2|611116|organism=Nannochloropsis oceanica|type=CDS|length=1245bp|location=Sequence derived from alignment at scaffold_54:47503..48943- (Nannochloropsis oceanica)
ATGGATAGACTGACACGTCGGGCAGGGGTCAAGGCCCCGATGACATCCTC
CTCTTCCTCCTCCTGCTCCTCCTCCGCCTTTTCCTCCTACTCTTCCCTCT
CCTCCCCCTTCAATGCAGCCTGGTTCTCGGACAAGTCGTGGCCCATGCCA
CCACAAAGTCGATCCAAGGCGGTTTGGATCAGCTTGATTTTGTCTTCCTT
TGGCATATTTCTGGTACTTACTTTCAGCAGCAGAGACACGCGCTCTGATT
CCTCTTCTTTCACCGGCATAATCCAATCGCTGCAGCAGCTCATGATGTCC
GTGCCCCCGAACCACTGGAGCAACCTACCCCACAAGCGGCTGCTAGTCAC
GCAGTTTGCCTCAGGGGATCGGGCCCAACAATTTAATAAGAATTGGCGCA
ACCACGAGGAGAAATTTATGAAGCAGCAACAGGACGCTTCTCTTCTCCTG
GCCTGCCCGGCCGACGACCGACAAACGCTTATGGATCAAGTGGTGCTACA
CAATAATTGGACGCTGGTAGGGAGCTGGGACCACGCCCATTCTTTTGCCC
ATGGACCTTTGCTGCAATATCGAACTCCGGGGGAAGGCATTGACGTGTTT
TTCCAACCGATGAATTTGAGTTTTCCTAAATATTATGAGGAGAGTGACCC
TAAGCCCATCCCTACCTGTGCGAAGGGGCGGCATTTCAGTTGGCAGTACG
CCTTGTACAGTGGGGCTGTCTTCGCGTATCAAATGATTCACCTGCCATTC
TTAGACAGATACGATTATTTTATGAAAATTGACGGAGATTTGACTTTTGG
CGACTCTTTCCCCCTTGATATTGGAGCAGACATGGAGCAACGAGGGTGTG
TGGTAGGCCACGCGGCCATTCACGGCTCAGGGGATTGCGAAGCACGGAAT
TTAGAGGCGTTGCTGGCGGCGGATGAGGCGTTGGGGTGGCCGAAACCCAA
GAGTTTGGCCTACCATTGGTGCAATGAAGATGGGAAGGGAGAGAAAGGCA
ACTTAATGTTCTTTGGAAACTTCGCGGTATATCGGACGAAGGGCTTTCTA
CTATCTCCGGAGATTCAAAGTATCAGCAGGTACATGTATGAGGAGTGGAG
GGATGGTTATTACACGCATCGATGGGGAGATCAAGGCCCCTTTGTAATGT
TTGCTTGCCAGATGCTGGATGTGCCGGACTTGGAGAAGGATGCAAAGATC
TGCTCGTATGCCGAGCTAAGGGAGAGTAAAATGATTGTGCATTAA
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Synonyms
Publications