jgi.p|Nanoce1779_2|348806, mRNA_10341 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|348806
Unique Name	mRNA_10341
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1410
Alignment location	scaffold_54:30884..33001 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	348892
Track	FilteredModels2
ProteinId	348806

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_54	supercontig	scaffold_54:30884..33001 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|348806	gene_10341	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|348806	mRNA_10341-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10341	CDS_10341	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_54:30884..33001+
coding sequence from alignment at scaffold_54:30884..33001+

mRNA sequence

>mRNA_10341 ID=mRNA_10341|Name=jgi.p|Nanoce1779_2|348806|organism=Nannochloropsis oceanica|type=mRNA|length=1410bp
TGGTGATGGTCTTGCCTGTGGCAGTTTGCGTGAAGGGTGAGGCGTAGCGC
GTAGCCAAGAGCCAAGCAAGATTGCAGGAACGGCATACAGGCAGCTTCAC
CAAAAAATTGTCGCATGAGCTCTTCAACCTCCTCCCTCCCTGCCAAGGCA
CTTCAAGCACCACCACCGCCGGTGCCCAACAACGGAACTAGTGACAGTGA
AGACGAAGGCGATCTGCTCGAGGAGCTCTGGCCCCGGGAGACCAAGCCCC
TGCTGATGTATCAGATGACTTTCTCCAACGGCGCCTCGGTGGACCTGCCT
ATTGTCCAAGACTTGATGGGACGACGATACGAAATGGGGATTGGCAACAT
CGTGTGGGACGCTGCCGTGGCTATGCACCGATTTTTCCAAGTCAAGTTCC
CACCCGGACATTTTCAAGGGAAGACCATCTTAGAGCTCGGTAGTGGCACT
GGCTTGGTCGGCATTACCCTTGCCCTTCTCGGCGCCCAAGTCATCCTTAC
CGACCTTCCAGATTTCCTTCCTATTCTCCAACACAATGTCTCTACCTCCC
TCTCCTCCCTCCATCCCGCCACCCTCGCTTCCCTCCCCTACCCCCTTCTC
CCCCCTCTCATCGAGCCTCTGACTTGGGGAGAGGCCCTCCCCCCCTCTCG
CCTTCGCATCTACGACTACGTCATTGGCTCTGACATAACGTATTGCAAGG
AACACCTGGACGACTCCTCCTCCTCCTCCACGGGCGATGATGCCGTACCA
TCTCCCTCCACCCCATCTCCTCCCTTCGTGGGTGTGGTTAACTCACACAC
CACGGTATACATCGGGCATTTGGAGCGAGGGGATGAACACGGATTCTTCG
AAAGGCTCGCGGCAAGAGGGATGGAGGTTGTAGAGGTCTGGAAGGAGGAT
GTGGGGGAGGGAGGAGTGGCGCGAAAGCTGTGGGTGCATGTGTTTCGGGC
GAGGAGGAAAGAGGGAGGAAAGGAGTACCGGGACGTGGAGGGGCAGCTAG
GCGACACTTCTTGACTGTGTAGGGCATGAAAGTATCAAATACCTAGTGGA
AAGAGAAACAGCAGGAGCAGCGGCGGCAGCACAGGAACCAAAGCAGACCA
AAGCAAAGCAAAGCACCAGGACAGGGGGCACAACACATAAGCGTATGAGA
TATAGAGGATCTATCTCGGATCTGTCAGCCCAACATCTCATGGCGGCCTC
GTTTTCTTTTCTCCTCCTTCCTACCTCTCGAACTCCCCTTACACGTCCAG
GCACTCCAATCCAATCAAAATCTACGCAACTCTACTCTACTCTTGCCTCT
TTTTGGTCTCCCTCCCACTTCCCCTCCTTCTTCAACCTCCATATATCTTC
GCCGTCGCTGACCATCTTCATTTATCCAGGCTGTACACTTCTATCTCCCC
CCCCCCCCTC

protein sequence of jgi.p|Nanoce1779_2|348806

>mRNA_10341-protein ID=mRNA_10341-protein|Name=jgi.p|Nanoce1779_2|348806|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MSSSTSSLPAKALQAPPPPVPNNGTSDSEDEGDLLEELWPRETKPLLMYQ
MTFSNGASVDLPIVQDLMGRRYEMGIGNIVWDAAVAMHRFFQVKFPPGHF
QGKTILELGSGTGLVGITLALLGAQVILTDLPDFLPILQHNVSTSLSSLH
PATLASLPYPLLPPLIEPLTWGEALPPSRLRIYDYVIGSDITYCKEHLDD
SSSSSTGDDAVPSPSTPSPPFVGVVNSHTTVYIGHLERGDEHGFFERLAA
RGMEVVEVWKEDVGEGGVARKLWVHVFRARRKEGGKEYRDVEGQLGDTS*

mRNA from alignment at scaffold_54:30884..33001+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10341 ID=mRNA_10341|Name=jgi.p|Nanoce1779_2|348806|organism=Nannochloropsis oceanica|type=mRNA|length=2118bp|location=Sequence derived from alignment at scaffold_54:30884..33001+ (Nannochloropsis oceanica)
TGGTGATGGTCTTGCCTGTGGCAGTTTGCGTGAAGGGTGAGGTAAGTGCT
TAGCCGTCCTTTTCCCCCTGTGTTTATATGACCTTGGAAGTCGCTCATCA
CCCGCAGGTTCCAGCGACGACCTTTCTCACGTCTTGTGTCGGCGAGCCCA
GGCATGCCGTCCATCACAAATAACTAACCCCCACGATACATCCATATCCC
ATGTATATGCCACAAGGCGTAGCGCGTAGCCAAGAGCCAAGCAAGATTGC
AGGAACGGCATACAGGCAGCTTCACCAAAAAATTGTCGCATGAGCTCTTC
AACCTCCTCCCTCCCTGCCAAGGCACTTCAAGCACCACCACCGCCGGTGC
CCAACAACGGAACTAGTGACAGTGAAGACGAAGGCGATCTGCTCGAGGAG
CTCTGGCCCCGGGAGACCAAGCCCCTGCTGATGTATCAGGTAAGCCCTGC
ATGCATATCCTGCAGCTTGCGCCGCGTCTCCTCACCCTTATCCCCTGGCT
TCCCCTCCATTTCCCTCCCTCTTTCATAAGATGACTTTCTCCAACGGCGC
CTCGGTGGACCTGCCTATTGTCCAAGACTTGATGGGACGACGATACGAAA
TGGGGATTGGCAACATCGTGGTACGTATCTCGCGTTTTTCCTGTTTATCC
TCCCTCCTCTGCTACGAGATACCATTCCTCCCTCTGCTGCGTCGCTTCAA
GGGCCACTGTCTCACTCAGCATTTAGTCGCCCTGCTGTGCTATTGTCACA
ATGATAACCTCTTCATAGTTTCTTCCGCCTCCCTCCTCTTCCCCTCCTCC
AAAGTGGGACGCTGCCGTGGCTATGCACCGATTTTTCCAAGTCAAGTTCC
CACCCGGACATTTTCAAGGGAAGACCATCTTAGAGCTCGGTAGTGGCACT
GGCTTGGGTACGTACACGAGAAACAATGTGGAGAGTGCCTCAATTGTGCG
TGCTTTTGCGTTCATTAAGAGTGTTATTTCGTGTGAGTTGCCTACCGATG
CATCTGCTCATGTCTCGTCTCTGATTCCTTCGCTGCTCCCTGTCCATCAC
TCACCTTCTCCGTCCATCCCTCCCCTTCTTTTCATCCGCTCACCAGTCGG
CATTACCCTTGCCCTTCTCGGCGCCCAAGTCATCCTTACCGACCTTCCAG
ATTTCCTTCCTATTCTCCAACACAATGTCTCTACCTCCCTCTCCTCCCTC
CATCCCGCCACCCTCGCTTCCCTCCCCTACCCCCTTCTCCCCCCTCTCAT
CGAGCCTCTGACTTGGGGAGAGGCCCTCCCCCCCTCTCGCCTTCGCATCT
ACGACTACGTCATTGGCTCTGACATAACGTATTGCAAGGAACACCTGGAC
GAGCTCCTCGCTACGCTCACCGACGCTGCTCCTCCTTCCCTCCCTCCCTC
CTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCACGGGCGATGATG
CCGTACCATCTCCCTCCACCCCATCTCCTCCCTTCGTGGGTGTGGTTAAC
TCACACACCACGGTATACATCGGGCATTTGGAGCGAGGGGATGAACACGG
ATTCTTCGAAAGGCTCGCGGCAAGAGGGATGGAGGTTGTAGAGGTCTGGA
AGGAGGATGTGGGGGAGGGAGGAGTGGCGCGAAAGCTGTGGGTGCATGTG
TTTCGGGCGAGGAGGAAAGAGGGAGGAAAGGAGTACCGGGACGTGGAGGG
GCAGCTAGGCGACACTTCTTGACTGTGTAGGGCATGAAAGTATCAAATAC
CTAGTGGAAAGAGAAACAGCAGGAGCAGCGGCGGCAGCACAGGAACCAAA
GCAGACCAAAGCAAAGCAAAGCACCAGGACAGGGGGCACAACACATAAGC
GTATGAGATATAGAGGATCTATCTCGGATCTGTCAGCCCAACATCTCATG
GCGGCCTCGTTTTCTTTTCTCCTCCTTCCTACCTCTCGAACTCCCCTTAC
ACGTCCAGGCACTCCAATCCAATCAAAATCTACGCAACTCTACTCTACTC
TTGCCTCTTTTTGGTCTCCCTCCCACTTCCCCTCCTTCTTCAACCTCCAT
ATATCTTCGCCGTCGCTGACCATCTTCATTTATCCAGGCTGTACACTTCT
ATCTCCCCCCCCCCCCTC

Coding sequence (CDS) from alignment at scaffold_54:30884..33001+

>mRNA_10341 ID=mRNA_10341|Name=jgi.p|Nanoce1779_2|348806|organism=Nannochloropsis oceanica|type=CDS|length=4500bp|location=Sequence derived from alignment at scaffold_54:30884..33001+ (Nannochloropsis oceanica)
ATGAGCTCTTCAACCTCCTCCCTCCCTGCCAAGGCACTTCAAGCACCACC
ACCGCCGGTGCCCAACAACGGAACTAGTGACAGTGAAGACGAAGGCGATC
TGCTCGAGGAGCTCTGGCCCCGGGAGACCAAGCCCCTGCTGATGTATCAG
ATGACTTTCTCCAACGGCGCCTCGGTGGACCTGCCTATTGTCCAAGACTT
GATGGGACGACGATACGAAATGGGGATTGGCAACATCGTGTGGGACGCTG
CCGTGGCTATGCACCGATTTTTCCAAGTCAAGTTCCCACCCGGACATTTT
CAAGGGAAGACCATCTTAGAGCTCGGTAGTGGCACTGGCTTGGTCGGCAT
TACCCTTGCCCTTCTCGGCGCCCAAGTCATCCTTACCGACCTTCCAGATT
TCCTTCCTATTCTCCAACACAATGTCTCTACCTCCCTCTCCTCCCTCCAT
CCCGCCACCCTCGCTTCCCTCCCCTACCCCCTTCTCCCCCCTCTCATCGA
GCCTCTGACTTGGGGAGAGGCCCTCCCCCCCTCTCGCCTTCGCATCTACG
ACTACGTCATTGGCTCTGACATAACGTATTGCAAGGAACACCTGGACGAC
TCCTCCTCCTCCTCCACGGGCGATGATGCCGTACCATCTCCCTCCACCCC
ATCTCCTCCCTTCGTGGGTGTGGTTAACTCACACACCACGGTATACATCG
GGCATTTGGAGCGAGGGGATGAACACGGATTCTTCGAAAGGCTCGCGGCA
AGAGGGATGGAGGTTGTAGAGGTCTGGAAGGAGGATGTGGGGGAGGGAGG
AGTGGCGCGAAAGCTGTGGGTGCATGTGTTTCGGGCGAGGAGGAAAGAGG
GAGGAAAGGAGTACCGGGACGTGGAGGGGCAGCTAGGCGACACTTCTTGA
ATGAGCTCTTCAACCTCCTCCCTCCCTGCCAAGGCACTTCAAGCACCACC
ACCGCCGGTGCCCAACAACGGAACTAGTGACAGTGAAGACGAAGGCGATC
TGCTCGAGGAGCTCTGGCCCCGGGAGACCAAGCCCCTGCTGATGTATCAG
ATGACTTTCTCCAACGGCGCCTCGGTGGACCTGCCTATTGTCCAAGACTT
GATGGGACGACGATACGAAATGGGGATTGGCAACATCGTGTGGGACGCTG
CCGTGGCTATGCACCGATTTTTCCAAGTCAAGTTCCCACCCGGACATTTT
CAAGGGAAGACCATCTTAGAGCTCGGTAGTGGCACTGGCTTGGTCGGCAT
TACCCTTGCCCTTCTCGGCGCCCAAGTCATCCTTACCGACCTTCCAGATT
TCCTTCCTATTCTCCAACACAATGTCTCTACCTCCCTCTCCTCCCTCCAT
CCCGCCACCCTCGCTTCCCTCCCCTACCCCCTTCTCCCCCCTCTCATCGA
GCCTCTGACTTGGGGAGAGGCCCTCCCCCCCTCTCGCCTTCGCATCTACG
ACTACGTCATTGGCTCTGACATAACGTATTGCAAGGAACACCTGGACGAC
TCCTCCTCCTCCTCCACGGGCGATGATGCCGTACCATCTCCCTCCACCCC
ATCTCCTCCCTTCGTGGGTGTGGTTAACTCACACACCACGGTATACATCG
GGCATTTGGAGCGAGGGGATGAACACGGATTCTTCGAAAGGCTCGCGGCA
AGAGGGATGGAGGTTGTAGAGGTCTGGAAGGAGGATGTGGGGGAGGGAGG
AGTGGCGCGAAAGCTGTGGGTGCATGTGTTTCGGGCGAGGAGGAAAGAGG
GAGGAAAGGAGTACCGGGACGTGGAGGGGCAGCTAGGCGACACTTCTTGA
ATGAGCTCTTCAACCTCCTCCCTCCCTGCCAAGGCACTTCAAGCACCACC
ACCGCCGGTGCCCAACAACGGAACTAGTGACAGTGAAGACGAAGGCGATC
TGCTCGAGGAGCTCTGGCCCCGGGAGACCAAGCCCCTGCTGATGTATCAG
ATGACTTTCTCCAACGGCGCCTCGGTGGACCTGCCTATTGTCCAAGACTT
GATGGGACGACGATACGAAATGGGGATTGGCAACATCGTGTGGGACGCTG
CCGTGGCTATGCACCGATTTTTCCAAGTCAAGTTCCCACCCGGACATTTT
CAAGGGAAGACCATCTTAGAGCTCGGTAGTGGCACTGGCTTGGTCGGCAT
TACCCTTGCCCTTCTCGGCGCCCAAGTCATCCTTACCGACCTTCCAGATT
TCCTTCCTATTCTCCAACACAATGTCTCTACCTCCCTCTCCTCCCTCCAT
CCCGCCACCCTCGCTTCCCTCCCCTACCCCCTTCTCCCCCCTCTCATCGA
GCCTCTGACTTGGGGAGAGGCCCTCCCCCCCTCTCGCCTTCGCATCTACG
ACTACGTCATTGGCTCTGACATAACGTATTGCAAGGAACACCTGGACGAC
TCCTCCTCCTCCTCCACGGGCGATGATGCCGTACCATCTCCCTCCACCCC
ATCTCCTCCCTTCGTGGGTGTGGTTAACTCACACACCACGGTATACATCG
GGCATTTGGAGCGAGGGGATGAACACGGATTCTTCGAAAGGCTCGCGGCA
AGAGGGATGGAGGTTGTAGAGGTCTGGAAGGAGGATGTGGGGGAGGGAGG
AGTGGCGCGAAAGCTGTGGGTGCATGTGTTTCGGGCGAGGAGGAAAGAGG
GAGGAAAGGAGTACCGGGACGTGGAGGGGCAGCTAGGCGACACTTCTTGA
ATGAGCTCTTCAACCTCCTCCCTCCCTGCCAAGGCACTTCAAGCACCACC
ACCGCCGGTGCCCAACAACGGAACTAGTGACAGTGAAGACGAAGGCGATC
TGCTCGAGGAGCTCTGGCCCCGGGAGACCAAGCCCCTGCTGATGTATCAG
ATGACTTTCTCCAACGGCGCCTCGGTGGACCTGCCTATTGTCCAAGACTT
GATGGGACGACGATACGAAATGGGGATTGGCAACATCGTGTGGGACGCTG
CCGTGGCTATGCACCGATTTTTCCAAGTCAAGTTCCCACCCGGACATTTT
CAAGGGAAGACCATCTTAGAGCTCGGTAGTGGCACTGGCTTGGTCGGCAT
TACCCTTGCCCTTCTCGGCGCCCAAGTCATCCTTACCGACCTTCCAGATT
TCCTTCCTATTCTCCAACACAATGTCTCTACCTCCCTCTCCTCCCTCCAT
CCCGCCACCCTCGCTTCCCTCCCCTACCCCCTTCTCCCCCCTCTCATCGA
GCCTCTGACTTGGGGAGAGGCCCTCCCCCCCTCTCGCCTTCGCATCTACG
ACTACGTCATTGGCTCTGACATAACGTATTGCAAGGAACACCTGGACGAC
TCCTCCTCCTCCTCCACGGGCGATGATGCCGTACCATCTCCCTCCACCCC
ATCTCCTCCCTTCGTGGGTGTGGTTAACTCACACACCACGGTATACATCG
GGCATTTGGAGCGAGGGGATGAACACGGATTCTTCGAAAGGCTCGCGGCA
AGAGGGATGGAGGTTGTAGAGGTCTGGAAGGAGGATGTGGGGGAGGGAGG
AGTGGCGCGAAAGCTGTGGGTGCATGTGTTTCGGGCGAGGAGGAAAGAGG
GAGGAAAGGAGTACCGGGACGTGGAGGGGCAGCTAGGCGACACTTCTTGA
ATGAGCTCTTCAACCTCCTCCCTCCCTGCCAAGGCACTTCAAGCACCACC
ACCGCCGGTGCCCAACAACGGAACTAGTGACAGTGAAGACGAAGGCGATC
TGCTCGAGGAGCTCTGGCCCCGGGAGACCAAGCCCCTGCTGATGTATCAG
ATGACTTTCTCCAACGGCGCCTCGGTGGACCTGCCTATTGTCCAAGACTT
GATGGGACGACGATACGAAATGGGGATTGGCAACATCGTGTGGGACGCTG
CCGTGGCTATGCACCGATTTTTCCAAGTCAAGTTCCCACCCGGACATTTT
CAAGGGAAGACCATCTTAGAGCTCGGTAGTGGCACTGGCTTGGTCGGCAT
TACCCTTGCCCTTCTCGGCGCCCAAGTCATCCTTACCGACCTTCCAGATT
TCCTTCCTATTCTCCAACACAATGTCTCTACCTCCCTCTCCTCCCTCCAT
CCCGCCACCCTCGCTTCCCTCCCCTACCCCCTTCTCCCCCCTCTCATCGA
GCCTCTGACTTGGGGAGAGGCCCTCCCCCCCTCTCGCCTTCGCATCTACG
ACTACGTCATTGGCTCTGACATAACGTATTGCAAGGAACACCTGGACGAC
TCCTCCTCCTCCTCCACGGGCGATGATGCCGTACCATCTCCCTCCACCCC
ATCTCCTCCCTTCGTGGGTGTGGTTAACTCACACACCACGGTATACATCG
GGCATTTGGAGCGAGGGGATGAACACGGATTCTTCGAAAGGCTCGCGGCA
AGAGGGATGGAGGTTGTAGAGGTCTGGAAGGAGGATGTGGGGGAGGGAGG
AGTGGCGCGAAAGCTGTGGGTGCATGTGTTTCGGGCGAGGAGGAAAGAGG
GAGGAAAGGAGTACCGGGACGTGGAGGGGCAGCTAGGCGACACTTCTTGA

Synonyms

Publications